Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_017146878 3150 bp mRNA linear INV 09-DEC-2024 (LOC108060931), mRNA. ACCESSION XM_017146878 VERSION XM_017146878.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017146878.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3150 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3150 /gene="LOC108060931" /note="uncharacterized LOC108060931; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108060931" CDS 138..2807 /gene="LOC108060931" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_017002367.2" /db_xref="GeneID:108060931" /translation="MEQLEPVSVSVTGQEQQQEPPSEPAGSLNTLDAQRVCRVCLKDA SLDGEVHFIFSEAPVEEDANLARILDECTQHRCQRHDGMPPHMCATCVEAARQAYRFK RHAERSYCSLVALLGRSPQLKVRAIEAASQTDQVALMPCEMCHDQFLNSLELRLHRNQ VHRTTKEGTTGPGTDGQPAEELKCKFCPQHFPHLRQLQSHLARSHEQTARLQCAHCQR TFSRRDHLLRHMRNQHRDVEEDLLRTWPPADESTMHSDGGDELVSAEVLLNEGQDDDE EDDDDDGRDGVGEAFQCNTNPISSNDEEEEDAVANQTLWLHIKPEPCLEAEEVDLAMQ LKLEKKRRRREKAEAQAEGSLERAVKDEPIAIGDAQFSIKEENQLVGSEDEAPMGVED FMKLHVSGELTLSDEDRFDDFVDEDSDLDDDEEDDEDDGEDGEFRLKQEPLDGDKPVK KSKSGRRRRRNKGEPNPENRCEVCQRTFSRHCHLLRHKLSHLEKKPHNCPHCPKAFAR SDHLKAHVQSLHSNKEHKCAICEAAFSRLDALERHKVSKHNGEGLEPGSELKLQLAEH TCEYCSKRFSSKTYLRKHTLLHTDFLYACKTCEETFRERAQLREHEKTHTGQRNFLCC ICGDSFARNDYLRVHMRRHNGEKPYKCRFCVKAFPRATDLKVHERYHTGTKPNLCNTC GKSFHRAYNLTIHMRTHTGERPYKCDQCPKSFTQSNDLKAHIRRHTGERYKCPHCDAY FLQLYNMRNHCLSAHNKHIETKTGRLQRTGLLDDGGQSHLTTVVMPPARYPHELDPQM AAAAAGAAGAAGGAESSSSTTVIHSPGTYNAPMAPGSASAAPASSLDGASFAPTASAP FGGFNFPPVVMAHLMYNHGGGSQHSQSGSDTGK" misc_feature 243..473 /gene="LOC108060931" /note="Zinc-finger associated domain (zf-AD); Region: zf-AD; smart00868" /db_xref="CDD:214871" misc_feature 687..752 /gene="LOC108060931" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275370" misc_feature order(702..704,708..710,714..716,720..725,732..737, 747..749,789..791,795..803,807..812,822..824) /gene="LOC108060931" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275370" misc_feature 774..830 /gene="LOC108060931" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275370" misc_feature 1527..>2414 /gene="LOC108060931" /note="FOG: Zn-finger [General function prediction only]; Region: COG5048" /db_xref="CDD:227381" misc_feature 1548..1610 /gene="LOC108060931" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1563..1565,1569..1571,1575..1577,1581..1586, 1593..1598,1605..1607,1647..1649,1653..1655,1665..1670, 1677..1682,1692..1694,1731..1733,1737..1739,1743..1745, 1749..1754,1761..1766) /gene="LOC108060931" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 1632..1697 /gene="LOC108060931" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1716..1766 /gene="LOC108060931" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1839..1901 /gene="LOC108060931" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1920..1982 /gene="LOC108060931" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2004..2066 /gene="LOC108060931" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2088..2150 /gene="LOC108060931" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(2103..2105,2109..2111,2115..2117,2121..2126, 2133..2138,2145..2147,2187..2189,2193..2195,2205..2210, 2217..2222,2229..2231,2271..2273,2277..2279,2283..2285, 2289..2294,2301..2306,2313..2315) /gene="LOC108060931" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 2172..2234 /gene="LOC108060931" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2256..2318 /gene="LOC108060931" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2337..2387 /gene="LOC108060931" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" polyA_site 3150 /gene="LOC108060931" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ccagtatgac cgcacctgag gtcacaacaa acgccttgta ttggtaaaaa aaagaaaatt 61 aaggaaatgc agcaggagtt gcgctaattg ttgatgccca catgcaatag cgaggacccc 121 aaggacgcga aacagccatg gagcagctgg agccggtttc ggtatcggtt acgggccagg 181 agcagcagca ggagccgccc agcgaaccgg cgggcagcct aaacaccttg gatgcgcagc 241 gcgtctgtcg cgtttgcctg aaggacgcct cgctggacgg cgaggtgcac ttcatcttca 301 gcgaggcgcc cgtcgaggag gacgccaatc tggcccgcat cctggacgag tgcacccagc 361 accggtgcca gcggcacgac gggatgcccc cgcatatgtg cgccacctgc gtggaggccg 421 cgcgccaagc ctatcggttt aagaggcacg cggagcgctc ctactgctcg ctggttgctc 481 tgctgggccg ctccccccag ctgaaggtgc gcgccatcga ggcggccagc caaacggacc 541 aggtggccct gatgccctgc gaaatgtgcc acgatcagtt cctcaacagc ctggagctgc 601 gattgcatcg caaccaggtg cataggacga ctaaggaggg caccactggc ccggggacag 661 atggccaacc tgccgaggag ctcaagtgca aattttgccc ccagcatttc ccgcatctcc 721 ggcagctgca gagccatttg gcgcgcagcc acgagcaaac tgcccggctg cagtgcgccc 781 actgccagcg cacctttagc cggcgggatc acctgctgcg gcacatgcgc aaccagcacc 841 gagacgtgga ggaggatctg ctgcgcacct ggccgccggc cgatgagagc accatgcaca 901 gcgacggcgg cgatgagctg gtctccgccg aggtgctgct gaacgagggg caggacgacg 961 acgaggagga tgatgacgac gacgggagag atggcgttgg cgaggccttc cagtgcaata 1021 cgaatcccat ttccagcaac gacgaggagg aggaggacgc ggtggccaat cagacgctct 1081 ggctgcacat caagccggag ccctgcctgg aggcggagga ggtggacttg gccatgcagc 1141 tgaagctgga gaagaagcgt cggaggcgcg agaaggcgga ggcccaggcg gagggctcct 1201 tggagcgggc tgtgaaggat gaacccattg ccattggcga cgcccagttc agcatcaagg 1261 aggagaacca gctggtgggc agcgaggacg aggctcccat gggcgtggag gactttatga 1321 agctgcacgt gagcggagaa ttaactctca gtgacgagga tcggttcgat gacttcgtcg 1381 acgaggatag cgacctggat gacgatgagg aggacgacga ggacgatggg gaagatgggg 1441 aattccggct caagcaggag cctttggatg gcgacaaacc cgtgaagaaa tccaaatcgg 1501 gcagacgtcg tcgccgcaac aagggcgagc cgaatcccga gaaccgctgc gaggtttgcc 1561 agcggacctt ctcgcgccac tgccacctgc tgcgccacaa gctctcgcat ctggagaaga 1621 agccccacaa ctgcccgcac tgccccaagg cgtttgcgcg cagcgatcac ctcaaggcgc 1681 atgtgcagag cctgcacagc aacaaggagc acaagtgtgc gatctgcgag gcggccttct 1741 cccggctgga cgctttggag cgtcacaagg ttagcaagca caacggcgag ggcctcgagc 1801 cgggcagcga actgaagcta cagctggctg agcacacgtg cgagtactgc tcgaagagat 1861 tctccagcaa gacctacctg cgcaagcaca cgctgctgca tacggacttc ctgtacgcct 1921 gcaagacctg cgaggagact ttccgcgagc gagcgcagct cagggagcac gagaaaacgc 1981 acaccggcca gcgcaacttc ctctgctgca tctgcggcga cagcttcgcc cggaacgact 2041 acctccgcgt gcacatgcgg cggcacaacg gcgagaagcc ctacaagtgc cgcttctgtg 2101 tgaaggcctt tccccgcgcc accgatctca aggtccacga gcgttaccac acgggcacca 2161 agccgaatct gtgcaatact tgcggcaaga gcttccatcg ggcctacaac ctgaccatcc 2221 acatgcgcac ccacaccggc gagcggccgt acaagtgcga ccagtgcccc aagagcttca 2281 cgcagagcaa cgacctcaag gcgcacattc ggcggcatac gggcgagcgt tacaagtgtc 2341 cgcactgcga cgcctacttc ctgcagctgt acaatatgcg caatcactgt ttgagtgccc 2401 acaacaagca catcgagacg aagacgggtc gtttgcagcg aacaggcctt ctagacgacg 2461 gtggccagtc gcatttgacc acggtggtca tgccgccggc aaggtatcca catgaactgg 2521 atccccagat ggccgccgcc gctgcaggtg cagctggagc tgccggaggg gctgagagct 2581 cctcctcgac caccgtcatc cactcaccgg gaacgtacaa tgccccaatg gcgccgggat 2641 cagcgtccgc tgctccagcc agcagcctcg atggagccag cttcgcaccc acggcatcgg 2701 ctccctttgg cggctttaac tttccgccag tcgtaatggc gcatctcatg tacaaccacg 2761 gaggaggcag ccagcacagc cagagcggca gcgacacggg caaatagcca tcgattatac 2821 tgctcctgct cctcatcctc aaccagaaca cacacaacta ttccagtgta gtcttaagct 2881 taacctctgt acatagccgg cggatgggag aggaaggcca attgaagggt tcatcacggg 2941 cgcaggcatc tcgcatgccg gccattttaa tgtgttaata tgtatttaat agtcgaataa 3001 gaactgctta tgtaggcggt tggaacattt ttataaagct tacatcagtg cgtatgtata 3061 ttaaaagtag agctcgctcc catcccccta acaagtttca ttgatgggca aataaatcat 3121 gaaaatatag caaaaccatc tagaattgta