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LOCUS XM_017146873 3203 bp mRNA linear INV 09-DEC-2024 (Usf), mRNA. ACCESSION XM_017146873 VERSION XM_017146873.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017146873.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3203 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3203 /gene="Usf" /note="upstream transcription factor usf; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108060927" CDS 295..1521 /gene="Usf" /codon_start=1 /product="uncharacterized protein Usf" /protein_id="XP_017002362.2" /db_xref="GeneID:108060927" /translation="MNVRKRPRLEMELGASATNTTTTATTSTTSSSVSMSNLIGNHHH TADLSEALVSSTFANGHQSLILTSATGNALMGSQGAQIFLTICGDENSDDSQEYYAIK QEPGSDLDVHSLLPTNLQLPTGCEIYLVKDTASLVGEPPAKAAIKLELDTLSEKPSRP KPQVMTPAAAAAAAPSGNATTTTSVLYGSHTHVQARSQPEAAGQTPSSKLEAYKKRDD KRRATHNEVERRRRDKINSWIFKLKEMLPSLSSSSGFSEASTSPSTSGSTSTSAASSS SSSQAPKGNPSSSSGRTPPNDSKSQILIKACEYIKSMQGEIDTLRDCLREADGLRASN QALREELDRLKRQQQLQERFHTAGGRSTFNVTLNSLNSSATSDLFEGIDSTPNLSAVS SLGFSKRGLLISDYDE" misc_feature 961..1248 /gene="Usf" /note="basic Helix Loop Helix (bHLH) domain superfamily; Region: bHLH_SF; cl00081" /db_xref="CDD:469605" misc_feature order(976..981,985..987,1000..1002,1186..1191) /gene="Usf" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:381392" misc_feature order(994..999,1006..1011,1015..1020,1030..1032, 1189..1194,1201..1206,1213..1215,1219..1224,1231..1236) /gene="Usf" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:381392" polyA_site 3203 /gene="Usf" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cgggccacac tgagccaaac gaaatttttt tgttactaaa aaaaaatcaa caaattgtat 61 tgttaaatgg ccgtgcgaac acgaacacac agaaatccgc cgcagcgctc gattcggaag 121 caaatcctcg tggcagtcgg gagttaataa tccgcagatc ggccagctcg ggggatacac 181 gccatcggta tccgcatccc gcaacaccat ccaaagaaag atcggagatc ccgggaggat 241 ccagggttac gtgattctgg ctgggattgg cactggaatt ggatcgatgc cacgatgaat 301 gtgcgcaagc ggccacgtct ggagatggaa ctgggtgcca gcgccaccaa caccaccacc 361 accgccacca cctccaccac gtcctcctcc gtcagcatga gcaacctcat cgggaatcat 421 caccacacgg ccgacttgtc ggaggccctg gtcagcagta ccttcgccaa cggccaccag 481 agcctgatcc tcaccagcgc cacgggcaat gcgctgatgg gcagccaggg cgcccagata 541 ttcctcacca tttgcgggga cgagaactcg gacgactcgc aggagtacta cgccatcaag 601 caggagcccg gctccgacct ggatgtccat tcgctgctgc ccaccaacct gcagctgccc 661 accggctgtg agatctatct ggtcaaggac accgccagtc tggtgggtga gccgccggcc 721 aaggcggcca ttaaactgga gctggacacg ctgagcgaga agccgagccg tccgaagccc 781 caggtgatga ctcccgctgc tgctgctgct gctgctccct cgggtaacgc caccaccacc 841 accagtgtcc tctacggctc ccacacccac gtccaggccc gatcccagcc agaggccgct 901 ggccagacgc ccagcagcaa gctggaggcc tacaagaagc gcgacgacaa gcgacgggcc 961 acgcacaacg aggtggagcg ccggcgtcgc gacaagatca acagctggat cttcaagctc 1021 aaggagatgc tgcccagcct gagctccagc tcgggcttca gcgaggccag cacgagtccc 1081 agcaccagcg gcagtacgag tacgagtgcc gccagcagca gcagcagcag ccaagcaccc 1141 aagggcaatc ccagcagctc cagcggccgc acgccgccca acgactccaa gtcgcagatt 1201 ctgatcaagg cgtgcgagta catcaagagc atgcagggcg aaatagacac gctgcgtgac 1261 tgtctgcggg aggcggacgg cctgagggcg agcaaccagg cactgcgcga ggaactcgac 1321 cgcctgaaga ggcagcagca gctccaggag cgcttccaca cggccggcgg caggtcgacc 1381 ttcaacgtga ccctcaactc gctgaacagc tcggcgacca gtgatctctt cgagggaatc 1441 gactcgacgc ccaacctgtc cgccgtctcc tcgctgggat tcagcaagcg gggactgctc 1501 atcagcgatt acgatgagta gaaggcatgg gaaatggagg caaaattatg ggtggaccga 1561 tatggttacg ggttacggga aaaaacagag agaacggaaa aaacggaggc ggatggacaa 1621 gcgctggcgc ctccataaag atatacgccc atccaccaaa gaatgacgtg caacgtacac 1681 gcaacgcaac acacgcagta caataaacgg acatgacgag tgatttcttg ttatcgccac 1741 tctgttatgc atatgttata taaggaaagc atattacata tatgtatgta tctatatgca 1801 gtcgaacttg ggtgactcaa gccaagttgt tggcctaact gctttcgaaa aagcagcaac 1861 aaaaaaagct gttctcaatt gagtttaatt aacaagctgc ggcgcaacag ctgcttttgt 1921 atgctataga tctggtattg gtattactcc tgccctccat cctcctcctc ctccaaaatg 1981 agcccccaaa aataacgatc taacgaattt gtacttgggt atttgattta catatttagc 2041 cttaagttcg gggatattag atcacaaaga atattgttga taagaagctt taaagcattt 2101 tctgtttttt ttatgtattt cttctttatt acgtttatta aatatatttg tttgtttcga 2161 tttgcccagc gaatctacaa ctaagctatt tttctgtgtt cattcggtcg caactttcgc 2221 tttcagtgtg gatttcgtgc ttagaataat atacatatat ttttttcaag acgtcaagta 2281 aacagaatta taataggcaa aatatcataa acaaattgaa tggcacttcc agctgaaagt 2341 caaagtgaga actgaaataa taaacatatt caatttagtc tacgatttgt tatacgagaa 2401 tttagcccta agtccggagc tccggagctt gagtagcaaa agttcgattg cgtagttgtc 2461 aggtcttttt tttatggagt gcacacagat cctcatgcag tttgccatca ttatatacct 2521 atatattacc tagaaataca gaactaaacc taaaagcgtt aacgatacct acctacttgc 2581 atatatacct tgaactaaat catatttgga gcatgtttcc atgcttgatt tttcgatttt 2641 attgtactgt ttctcgcact aattacctac ggaataatgt aacgaaatta tattgtatct 2701 agttatatcg tatatatatt atatacatat acatatatat aaatataaat ataaatatag 2761 agagacaagt gtacatacgt agtgcaatcg ataagagagt gggccgtgcg caccgttaca 2821 gataaaacgc tattgttgat aaagaataat attatatttg agcataaact tgttgtgaat 2881 gttatatcac tgttttcgat atacgacgct gtttcagaag tatacagata cagaacaaag 2941 tgttttaaat acgagataat ttttaatact taacgaaaat gccaaatgcc aaaaaccgaa 3001 cacaaaacac taggatttgg gattgcgaga tgagatgagg gaattgcatt gtttgaccca 3061 tagccgaaat aaatgggaga tgggctcttg tgttacttgt tgctatctat atacagtaca 3121 ttacaataat atcacatttc tgtcatttga cagctaataa ttctattcaa tttcaataaa 3181 cgaactcagt aatggttaac aca