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LOCUS XM_017146867 4092 bp mRNA linear INV 09-DEC-2024 helicase DHX57 (LOC108060921), mRNA. ACCESSION XM_017146867 VERSION XM_017146867.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017146867.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4092 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4092 /gene="LOC108060921" /note="putative ATP-dependent RNA helicase DHX57; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108060921" CDS 85..3951 /gene="LOC108060921" /codon_start=1 /product="putative ATP-dependent RNA helicase DHX57" /protein_id="XP_017002356.2" /db_xref="GeneID:108060921" /translation="MDESSRQHMEDCFLRSPSDIRTTNVPAVPKSQAADNKSRKTELH VLRLNDESRQMTMDTLRQIHGPDFRLDDISKYKDRGRGGHGVKHSYWQDRGTLVVQSM QGVSSTRGSDSDGDRLRRYALAKLENYGFQAVHCLEAYDHCSGDTEAALLLLYRRYMR IPEEEQLHLEPPGEQELLDMRAEEKEALESIYDQAYEEREANRVWNLKFRIDHLLAHS PSEVRKAREAVLAAAAAAAQAALDKKKKAPQRCRNFDRDGTCKYGPKCRFAHLPPQPA DEDMVKKDTLDENDNELWFHVEVRFPPGSRYPYEAPFVYLKTTCHDIPHELRLRYARH LYREAREICRDGIPCVYSICDLLQSNEQLAGRLDTSAFPSPKRSLFHDEPEGGGEDLD GQRKEAPRPTHYARGQTSRNEGGHQRNAEAQARENRRLLQQFVERRKEERYQKVIDGR KQLPAFAEIERILALIESSPVVVISGETGCGKSTQVPQFILDNWFFRSLQLPAKENLP HVEIICTQPRRLSAIGVAERVAAERLDRIGQLVGYQIRLENKVSQSTRLSFCTTGILL RRLASDPLLESVTHVIVDEVHERSEESDFLLLILKNLLRERKDLKVILMSATLNATLF SEYFGGAPVLDIPGRTFPVQQLFLEDILEMSDFVMEYDTKYCRKLKKQEQDVLERELE YADVQASGQAPGKKIKDEKLTLAETYQRYADYSKPTCKSIYLMEPMTINPELIESVLK YIVEGAHDWPREGTILIFLPGFGEIQTVHDSLLDNALFSPRAGKFILVPLHSALSGED QALVFKKAPPGKRKIVLSTNIAETSVTIDDCVFVVDCGLMKEKCFDSNRNMESLDLVW VSRANAKQRKGRAGRVMPGVCIHLYTSHRYHQHILPQPVPEIQRVPLEQIVLRIKTLQ TFASRNTLSVLLETLEAPTEDSVLGALTRLRDVGALDAEDQLTPLGHHLAALPVDVRI GKLMLYGAIFQCLDSVLTIAACLSNKSPFVSPLSKRTEADKCKRQFALGNSDHLTVLN AYRKWLDVARRGNYAASRNYASEHFLSLNTLETIADLKYQYLELLVSIGFVPINVPRR RKNAADNILTLTGVEQNHNGDNNRLLTSLLCAALYPNIVKIMTPERVYVQTAGGAVPR EPSHQDLRFKTRGDGYVKIHPSSVNSHVAVFQAPFLVYQEKVRTSAIYIRDCSMLPLI AMVLFAGSDFKVELHDGDFLFLLESGWIILKAHDLETAEMVQCLRAEMIKLLEEKIRD PCLNLLHHKNGCRMIGNIVHLISKNS" misc_feature 451..546 /gene="LOC108060921" /note="UBA domain-like superfamily; Region: UBA_like_SF; cl21463" /db_xref="CDD:473871" misc_feature 607..1185 /gene="LOC108060921" /note="RWD domain of DEAH box protein 57 (DHX57) and related proteins; Region: RWD_DHX57; cd23825" /db_xref="CDD:467661" misc_feature 832..900 /gene="LOC108060921" /note="Zinc finger C-x8-C-x5-C-x3-H type (and similar); Region: zf-CCCH; pfam00642" /db_xref="CDD:459885" misc_feature 1438..>3309 /gene="LOC108060921" /note="HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]; Region: HrpA; COG1643" /db_xref="CDD:441249" misc_feature 3424..3720 /gene="LOC108060921" /note="Oligonucleotide/oligosaccharide-binding (OB)-fold; Region: OB_NTP_bind; pfam07717" /db_xref="CDD:400182" polyA_site 4092 /gene="LOC108060921" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 acatcgaaag tagccgagtt ggcagcacta ttaggcgttt gttgtgaaat atacctgatt 61 tacgtttgcc attttccggt ggccatggac gaatcctcgc gacagcacat ggaggactgc 121 ttcctgcgca gccccagcga catccgcacc accaacgtgc ccgcggtgcc gaaatcgcag 181 gcggcggaca acaagtcgcg gaaaacggag ctccatgtcc ttcggctgaa cgacgagtcg 241 cgccaaatga ccatggacac gctgcgccag atccacgggc ccgacttccg gctggacgac 301 atcagcaagt acaaggatcg cggacgcggc ggccacggcg tgaagcactc ctactggcag 361 gatcgcggca ctttggtggt ccagagcatg cagggcgtga gctccacgcg tggcagcgac 421 agcgacggcg atcgcctgcg tcgctatgct ctggccaagc tggagaacta cggcttccag 481 gccgtccact gtctggaggc ctatgatcac tgctccggcg acacggaggc tgctttgctg 541 ttgctctacc gccgctacat gaggattccg gaggaggagc agctgcatct ggagccgcca 601 ggcgaacagg agctgctcga tatgcgcgct gaggaaaagg aggccctgga gtccatctac 661 gaccaggcgt atgaggagcg cgaggcgaat cgggtgtgga atctgaagtt ccgcatcgac 721 cacctgctgg cccacagtcc ctcggaggtg cggaaggcta gggaggcggt cctggccgcc 781 gccgctgccg ctgcccaggc tgcgctggac aagaagaaga aggcgccgca gcggtgtcgc 841 aactttgacc gcgacggcac ctgcaaatac ggccccaagt gtaggttcgc ccacttgccg 901 ccgcagccag cggatgagga catggttaag aaggataccc tcgacgagaa cgacaacgag 961 ctgtggttcc atgtggaggt ccgctttccg cccggcagtc gctatcctta tgaggcgccc 1021 tttgtctacc tgaaaaccac ctgccacgac attccgcacg agctgcgtct ccgctacgcc 1081 cgccatttgt acagggaagc cagggagatc tgcagggatg gcattccctg tgtctacagc 1141 atctgcgacc tgttgcagtc gaatgaacag ctggctgggc gcctggacac ctcggccttc 1201 ccgtcgccca agcgttcgct attccacgat gagccggagg gcggtggcga ggatttagat 1261 ggtcagcgta aggaggcgcc gagacctacg cattacgcgc gcgggcagac gtcgcggaac 1321 gagggaggcc atcagcggaa tgcggaggcg caggcccgcg agaatcgtcg cctgctgcag 1381 cagttcgtgg agcggcgcaa ggaggagcgc taccagaagg tcatcgatgg taggaagcag 1441 ctgcctgcat tcgccgaaat cgaacgcatt ttggcgctca tcgaaagctc gccggtggtg 1501 gtgatttcgg gtgaaacggg ctgcggcaag agtacccaag tgccgcagtt catcctggac 1561 aactggttct ttcgctcgct ccaactgccg gcgaaggaga acctcccgca cgtggagatc 1621 atctgcacgc aaccacgacg cctgtcggcc atcggagtgg cggagcgcgt ggctgccgag 1681 cgactggatc gcattggcca actggtgggc taccagatac ggctggagaa caaggtgtca 1741 cagagcacgc ggctgagttt ctgcaccacc ggcatcctgc tgcgccgctt ggcctccgat 1801 ccgctgctcg agagcgtcac ccatgtgata gtggacgagg tgcatgagcg ttccgaggag 1861 tcggactttc tgctgctcat cttgaagaat ttgctgcggg agcgcaagga tcttaaggtt 1921 atcctcatgt cggccacgct gaatgccaca ctcttttcgg aatactttgg cggagctccc 1981 gtcttggata ttcccggtcg caccttcccc gtccagcagc tcttcctcga ggatatcctc 2041 gagatgagcg actttgtcat ggagtacgac acgaagtact gccgcaagct gaagaagcag 2101 gagcaggatg tcctggagcg cgagctggag tacgccgatg tccaggcttc gggccaggcg 2161 ccgggcaaga agatcaagga cgagaaacta acgctggccg agacctatca gagatatgcg 2221 gactacagca agccgacgtg caagagtatt tacctgatgg agccgatgac catcaacccg 2281 gaactgattg aatccgtact caaatacatt gttgagggcg cccacgactg gccacgcgag 2341 ggcaccatcc tcatctttct gcccggcttc ggggagatcc aaacggtgca cgattccctg 2401 ctcgataacg cgctcttctc gccaagggct ggcaaattta tcctggtgcc gctgcactcg 2461 gccctttctg gcgaggatca ggcactggtc ttcaagaaag cgccgccagg gaaacgaaag 2521 atcgtgctaa gcacaaacat cgccgagacc tcggtgacca tcgacgattg tgtctttgtg 2581 gtggactgcg gcctgatgaa ggagaagtgc ttcgactcga accgcaacat ggagtcgctg 2641 gacctggtct gggtctcccg tgcgaatgcc aagcagcgca agggtcgtgc gggtcgtgtg 2701 atgcccggcg tgtgcattca cctgtacacc agtcatcggt atcaccagca catcctgccc 2761 cagccggtgc cggagatcca gcgtgtgccg ctcgagcaaa ttgtgctgcg catcaagacc 2821 ctgcagacgt tcgcctcgcg caacacgctc tccgttctcc tcgagacttt ggaggcgccc 2881 acggaggaca gtgttctggg tgccctgaca cgtttgcgcg atgtgggtgc tctcgatgcg 2941 gaggatcagt tgacgccgct gggccatcat ctcgctgccc tgcccgtcga cgtgcgcatc 3001 ggcaagctga tgctgtacgg agcgatcttc cagtgcctgg acagcgtcct caccatcgcc 3061 gcctgcctga gcaacaagtc gccgttcgtg agtccgctga gcaagcgcac ggaggcggat 3121 aagtgcaagc ggcagtttgc cctgggcaac agcgatcacc tcaccgtgct gaatgcttac 3181 aggaaatggc tggatgtggc gcgtagggga aactatgcgg ccagcagaaa ctatgccagc 3241 gagcactttt tgtcgctaaa cacgcttgaa acaatagccg acctcaagta ccagtacctg 3301 gagctactcg tttccattgg ctttgtgccc atcaatgtgc cgcgaaggcg caagaatgcc 3361 gccgataata ttctgacact aacgggtgtg gagcaaaatc acaatggcga caacaaccgg 3421 ctgctcacct cgctcctctg cgctgccctc tatccgaata tcgttaagat aatgacgccc 3481 gagcgcgtct acgtccagac ggctggcggt gctgtgccgc gcgagccgag ccaccaggat 3541 ctgcgtttca agacgcgcgg cgatggctat gtgaagatcc atccgtcgtc cgtcaactcg 3601 catgtggccg tcttccaggc gccctttctt gtctaccagg agaaggtgcg caccagcgcc 3661 atttacatca gggactgctc aatgctgccg ctcatcgcca tggtcctctt cgccggcagc 3721 gactttaagg tggagctgca cgacggcgac tttctctttc tgctggaaag cggatggatc 3781 atactgaagg cccacgacct cgagaccgcc gaaatggtgc agtgcctgcg ggccgagatg 3841 atcaagctgc tggaggagaa gattcgcgat ccgtgcctta atctgttgca ccacaagaac 3901 ggctgccgga tgatcggcaa cattgttcac ctgatcagta aaaatagctg agatgctcat 3961 atttccccga ctacccaaat cgtttgtaca ttttgtgtaa tagctgttgt agccgatatt 4021 taaaatgcct gtaatataca tacgccaaac gagaccaata acgggtaacc gaatcgatgg 4081 ctttaaacca cg