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LOCUS XM_017146858 2457 bp mRNA linear INV 09-DEC-2024 (Tango5), transcript variant X3, mRNA. ACCESSION XM_017146858 VERSION XM_017146858.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017146858.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2457 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2457 /gene="Tango5" /note="Transport and Golgi organization 5; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins" /db_xref="GeneID:108060916" CDS 123..1598 /gene="Tango5" /codon_start=1 /product="vacuole membrane protein 1 isoform X1" /protein_id="XP_017002347.2" /db_xref="GeneID:108060916" /translation="MSQHSKKDGSSSGSGNGSGSHAGNNKSHKRQAANGSLKAQSTSH SHSQTPSKSPSGSSNSNSSSSSRSLSGSSMQAPPPTKKNQKDKQRERERAERSQLVLW RRPLQTTKYCGLELAALLRTWSTRLLQQRLLLAALIVLGIVFSVIYKIDGPHQLAIEF VRRNTWFFVYWLGLGVLSSVGLGTGLHTFLLYLGPHIASVTLAAYECNSLRFPQPPYP DDIICPEEPYDKRVPNIWSIMSKVRMEAFLWGAGTALGELPPYFMAKAARLSGYDPED AEELAEFEALNAKRHQKNLSLMDKGKLFMERVVERVGFFGILACASIPNPLFDLAGIT CGHFLVPFWTFFGATLIGKAVIKMHIQKIFVIIAFNETLIERAVDLLASLPLLGHKLQ EPFKSFLKNQKQRLHRQQRGSGGSASGAGDSGNLLSRIFETFVIGMVCYFVVSIVNSL AQSYHKRLHKKPATGAATTPTRLAAGAAPSKKAGKQKALRD" misc_feature <1038..1187 /gene="Tango5" /note="SNARE associated Golgi protein; Region: SNARE_assoc; cl00429" /db_xref="CDD:469768" polyA_site 2457 /gene="Tango5" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cgtttttggc atttccccgg cactcgcagg agacccaaat gtaattcaat gaattaaatg 61 tgaaacatcg tgccaaagtg cagacagtca aagaagcagc cgcttgcaag ccaaccgctt 121 aaatgtcaca acactcgaaa aaggacggca gcagtagcgg aagcggtaac ggcagcggta 181 gccatgccgg caacaacaag agccacaagc ggcaggcggc caacggcagt ctgaaggcac 241 agtcaacctc ccactcccac agccaaacgc cctcgaaatc gcccagcggc agtagtaata 301 gcaacagtag cagcagcagc agaagcctca gcgggagcag catgcaggct cctcctccga 361 cgaagaagaa ccaaaaagac aagcagcgcg aaagggagcg cgcggaacgc agccagctgg 421 tcctctggcg acgtcccctg cagaccacca agtactgcgg cctcgagctg gccgccttgc 481 tgcgcacgtg gagcaccaga ctgctgcagc agcgactcct gctggccgcc ctgatagtat 541 taggcatcgt atttagcgta atttacaaaa tagacggccc ccaccagttg gccattgagt 601 ttgtgcgccg gaacacctgg ttcttcgtct actggctcgg cctgggcgtc ctgtcgtcgg 661 tgggcctggg caccgggctg cacaccttcc tgctctactt gggcccgcac atagccagcg 721 tcacgctggc cgcctacgag tgcaactccc tgcgcttccc gcagccaccg tatccagatg 781 acatcatctg tcccgaggag ccgtacgaca agcgggtgcc gaacatctgg tccatcatgt 841 ccaaggtgcg catggaggcc ttcctctggg gcgccggcac agcgctgggc gagctgccgc 901 cttacttcat ggccaaggcg gcgaggttgt cgggctacga tcccgaggac gccgaggagc 961 tggccgagtt cgaggctctc aacgcgaagc gccaccaaaa gaacctcagt ctcatggaca 1021 agggcaagct cttcatggag cgcgtcgtgg agcgcgtcgg attcttcggc atcctggcct 1081 gtgcaagcat tcccaatccc ctgttcgatc tggccggaat aacctgcggc cacttcctgg 1141 tgccattctg gacgttcttc ggggccacgc tgatcggcaa ggcggtgatc aagatgcaca 1201 tccagaagat cttcgtgatc atcgccttta atgagacgct gatcgagcgg gccgtcgatc 1261 tgttggcctc gctgccgctg ctcggccaca agctgcagga gccgttcaag tccttcctga 1321 agaaccagaa gcagcgtctg catcgccagc agcgtggatc cggtggctcg gcatccggag 1381 cgggcgattc gggcaatctg ctgtccagga tcttcgagac gttcgtcatc ggaatggtgt 1441 gctacttcgt ggtgtccatc gttaactccc tggcccagag ctaccacaag cggctgcaca 1501 aaaagccggc gacgggggct gcgaccacgc ccactcgcct ggcggcgggg gcggcgccga 1561 gcaagaaggc gggaaagcag aaagctttac gggactagag aatcggtgga agtgtttttc 1621 tgttgatcgt tgccccccaa aaacccaaaa tcatacccct ctttcgttta aattattttg 1681 tttattgcgg ccttcgctct tagtcaaatt ataaactgta tgtgagtgtg accgcgagag 1741 gaggagacgg ccggaaagcc agaggaattt accttgtaga ctagattagg aaaaacagaa 1801 gagtaacgca gcagatgcag tagcagcagc cacaacaata gccagagcag aatatatttt 1861 agtaatgtac aagaagaaaa ccctagcaat tttccgcgcg agtatcgttt cgatgtagcg 1921 aaagtgagag ggacgccgct agtcgctagt cgcgcctaat gaaaagcaaa ttgtgcaaaa 1981 gttgtgcaaa agacaaacaa gccagagcaa acagagagcc cgaaataaaa ataaaattta 2041 gccaggagcg agtggaaagt ataggaaaga tttaaaaagt gctgaaaaat aaatgaaata 2101 tggatataca aattaaagcc ggacgtatgc ctcaatttag gtgggatttc agttgggcga 2161 aaatgattac tcccagcata agcctggctt aattaaagat taactgctga aaaataataa 2221 acgatatatg gatacagaaa caaaagcctg caaatgtatg tacgtatcag tttacaagga 2281 actgaagtgg tttagctgga aaggcagtcg attaacacga ggatgagtaa gctgtcctcg 2341 cgatttccgg ctaaacccaa taattaatac aaagaaaaca ttaaactgaa tatagcgtgg 2401 gaggaaacag atgaaataac taagtgcaaa ttaataaata aataatggaa atacaaa