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LOCUS XM_017146856 1678 bp mRNA linear INV 09-DEC-2024 transporter 1 (LOC108060915), mRNA. ACCESSION XM_017146856 VERSION XM_017146856.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq; corrected model. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017146856.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 2 indels ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-176 JARPSC010000001.1 19056478-19056653 177-177 "N" 1-1 178-251 JARPSC010000001.1 19056654-19056727 252-437 JARPSC010000001.1 19056729-19056914 438-1113 JARPSC010000001.1 19057932-19058607 1114-1219 JARPSC010000001.1 19060815-19060920 1220-1678 JARPSC010000001.1 19061730-19062188 FEATURES Location/Qualifiers source 1..1678 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..1678 /gene="LOC108060915" /note="mitochondrial ornithine transporter 1; The sequence of the model RefSeq transcript was modified relative to its source genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108060915" CDS 138..1511 /gene="LOC108060915" /note="The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon" /codon_start=1 /product="LOW QUALITY PROTEIN: mitochondrial ornithine transporter 1" /protein_id="XP_017002345.2" /db_xref="GeneID:108060915" /translation="MRESERDTAAAAAXNNTIEDNGESSGPAAQFVPLPPNPEAIKHR RPKKTEAPPDEPPTDDEPQTPPMPPPPPRIGSSQAGSSVLIMTPDEIIEAYERALQEG QEDGEADGEQKGKSKRWLSRPISVKSTLRAVRDGLLFVVGGFLRFLRRLDMHGGGSGN NINFVEGLIDFMAGSLGGAAQVYVSQPLDTVKVKLQTFPEIYRGMWDCFVSTYRKDGV LRGLYAGSVPAVFANVAENSVLFAAYGGCQKFVAFFVGKETSADLSTVENACAGSLAA CFSTLTLCPTELIKCKLQALREMKHFVEPAHPEDMRTPWTLTRYIWRTEGIRGFYRGL SSTFLREMPGYFFFFGSYEGTREILRREDQTKDEIGPLRTMIAGAIGGVCLWTSTFPA DVIKSRIQVKNLNESMFAVGADIVRREGVLALYRGLLPSVLRTIPATATLFVVYEYTK RAMSATL" misc_feature 639..887 /gene="LOC108060915" /note="Mitochondrial carrier protein; Region: Mito_carr; pfam00153" /db_xref="CDD:395101" misc_feature 921..1220 /gene="LOC108060915" /note="Mitochondrial carrier protein; Region: Mito_carr; pfam00153" /db_xref="CDD:395101" misc_feature 1236..1499 /gene="LOC108060915" /note="Mitochondrial carrier protein; Region: Mito_carr; pfam00153" /db_xref="CDD:395101" polyA_site 1678 /gene="LOC108060915" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cattaaacat cgcaagcaca cgaaaaaaaa aacatacacc aaaaattgtc gttttccccc 61 ggaaatcgct cgcctagggt cagagaggga cagcaagagc cgcagcttca gaatcgcccc 121 atccctttct cgttcccatg cgcgagagcg agcgggacac cgcagcagca gcagcangca 181 acaacaccat agaagataat ggagaatcca gcggaccagc ggcacaattc gtaccgctac 241 cgcccaaccc tgaggcgatc aaacaccgcc gtccgaagaa aaccgaagcg ccacccgacg 301 aaccgcccac cgatgacgaa ccccagacgc cgcccatgcc cccgccgccc ccgcggatcg 361 gcagcagtca ggcgggcagc agcgtgctga taatgacgcc cgacgaaatc atcgaggcct 421 acgaacgcgc ccttcaggag gggcaagagg acggggaggc cgacggagag cagaaaggca 481 agtcgaagcg ctggctgagc aggccgatca gtgtgaaatc gacgctgaga gcggtacgcg 541 acggcctgct gttcgtggtg ggcggtttcc tgcgcttcct tcgacggcta gacatgcacg 601 gcggcggtag cggcaacaac atcaactttg tcgaggggct gatcgacttc atggcgggct 661 ccctgggcgg agcggcccag gtgtacgtgt cgcagcccct cgacacggtc aaggtcaagc 721 tgcagacctt cccggagatc tatcgcggca tgtgggactg ctttgtgagc acctatcgca 781 aggacggtgt cctgcgcggc ctgtacgccg gatccgttcc ggccgtcttc gccaacgtgg 841 ccgagaactc ggtcctgttc gccgcctacg ggggctgcca gaaattcgtg gccttcttcg 901 tcggcaagga gacctccgcc gatctgagca ccgtggagaa cgcctgcgcc ggctccctgg 961 ccgcctgctt ctccacgttg accctctgtc ccacggagct catcaagtgc aagctgcagg 1021 cgctgcgcga gatgaagcac ttcgtcgagc cggcccatcc ggaggacatg cggacgccct 1081 ggacgctcac gcgatacatc tggcgtactg agggcatccg aggattctat cgaggattga 1141 gctctacttt cctgcgcgag atgcccggct acttcttctt cttcggcagc tacgagggca 1201 cccgtgaaat actgcgccgc gaggaccaaa ctaaggatga aattggacca ctgcgtacca 1261 tgatagccgg cgccattgga ggcgtctgtc tgtggacgtc gacgtttccg gcggacgtga 1321 tcaagagtcg gatccaggtg aagaacctca acgagagcat gttcgcggtg ggagcggaca 1381 tcgtgcggcg tgaaggtgtc ctggcgctgt accgcggcct gctgccctct gtcctgcgca 1441 ccattccggc cacggccacc ctgttcgtgg tctacgagta caccaagcga gcgatgagcg 1501 ccaccctctg atgatccgat ggcaaggatc aaggatcgag gagcttttgg cgcgtggccg 1561 cgggcggtca ttataaaata ttcgataatt attccttttt ttttctagat aattaataga 1621 tcgtagtgtt gtgcctgtac aatgttcaga taatgctaat gactgactaa tatccaaa