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LOCUS XM_017146830 3523 bp mRNA linear INV 09-DEC-2024 transcript variant X2, mRNA. ACCESSION XM_017146830 VERSION XM_017146830.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017146830.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3523 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3523 /gene="l(1)G0289" /note="lethal (1) G0289; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108060898" CDS 84..1961 /gene="l(1)G0289" /codon_start=1 /product="plexin domain-containing protein 2 isoform X2" /protein_id="XP_017002319.2" /db_xref="GeneID:108060898" /translation="MAKSVGGACAQIAVLLAIFCSASALSKRDTYELLDTKLPVVDTY GVVPLATDQLHRQRRALSVDAKAIAKLEPANATAEVGAAVAAAGGGAAAAAETTVTTV DNKAAAGGSVSYNVHNVGVNGTGQRKTYSEVAAAAAATVDSSTTNPNINVAPKKQTQL TQSSYPKKVAPSVLAAVPSSTDRSPASIDVDVSKVDVPDEEIEQSWKNESLVRSEDFH DYYNSVLYVNKEEMASLWAQLKTTPENTMLSSSHRRAMTVELKFDFPFYGHYVRNITV ATGGFLYTGEYVHSWLAATQYIAPLMANFDTSMSNDSFVRVQDNGTAFVAVWENVTLQ DKPDFGKFSFSVTLHQSGDIVFAYLQVPTLINSIQDKEHPVKVGLSDAYIIDKHLYFA RRKTIYEYHRVTFQQGEITNSTIIKLAAQPTCLGYSDCNACINHNTTFTCLWCSALNR CSTGTDRKKHEWIQKGCETAAIRVNSSCPALGEKGNNAAQMKNGAANSGAGSVISAST AATGSSGAPVTEPNVISTRAPHATGQAKPDAEAASGVHTDGKIGNAELSHAEAENKNV GVAFGFMVPICLVFAVTLWLFYAYRNPHTKSGQLLIQFRPSQWSWRRGEARYTAATIH M" misc_feature 1350..1475 /gene="l(1)G0289" /note="Plexin repeat; Region: PSI; pfam01437" /db_xref="CDD:396154" polyA_site 3523 /gene="l(1)G0289" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 atactcttca catcgctagt ttctttttgc ctcactattc attccatttc aacggcggca 61 gaaacagaaa taacggttga acaatggcga agagtgtcgg tggtgcgtgc gcgcaaatcg 121 cggtcctttt ggccatattc tgcagtgcat cggccctgtc gaaacgggat acctacgagc 181 tcctggacac caagctccca gtcgtcgata cctatggagt agtgcctctt gcgacggacc 241 agctgcaccg ccaaaggcgg gccctttcgg tggatgccaa ggcgattgcc aagctcgagc 301 ccgccaatgc cactgcggag gtgggagcag cggttgctgc ggctggagga ggagctgctg 361 ccgccgccga gacgacggtg accacggtgg acaacaaggc agctgcagga ggcagtgttt 421 cctacaacgt tcacaatgtc ggagtcaatg gcaccgggca gcgaaagact tacagcgaag 481 tggctgcagc tgcggcggcg acagtcgact caagcaccac caaccccaac atcaatgtgg 541 cccccaagaa gcagacccag ttgacccagt ccagctatcc caagaaggtg gccccatccg 601 tcttggccgc cgtccccagc agcacggatc gctcgccggc cagcatcgat gtcgatgtgt 661 ccaaggtgga cgtgcccgac gaggagatcg agcagtcgtg gaagaacgaa tcgctggtgc 721 gcagcgagga cttccacgac tactacaaca gcgtgctcta cgtcaacaag gaggagatgg 781 cctcgctgtg ggcccaactc aagacgacgc ccgagaacac catgctatcc tcctcccacc 841 gacgcgccat gaccgttgag ctcaagttcg acttcccctt ctacggccac tatgtgcgca 901 acattacggt ggccaccggc ggatttctct acaccggcga gtacgtccac tcttggctgg 961 cggccaccca gtacatcgcc cccctcatgg ctaactttga caccagcatg tccaacgact 1021 cgtttgtccg agtccaagac aacggaaccg ccttcgtcgc cgtgtgggag aatgtgacgc 1081 tgcaggataa gccggatttc ggcaagttct cgttcagcgt gacgctgcac cagagcggcg 1141 acatcgtctt cgcctacctg caggtaccga cgctcatcaa ttccattcag gacaaggagc 1201 atccggtcaa ggttggcctc tccgacgcct acatcatcga caagcacctc tactttgccc 1261 gccgaaagac aatctacgag taccaccgag tcaccttcca gcagggggag atcaccaact 1321 ccaccatcat caagctggcc gcccagccca cctgccttgg ctacagtgac tgcaatgcgt 1381 gcatcaacca caacacaacg tttacgtgcc tctggtgctc ggccctgaat cgctgctcca 1441 cgggcaccga ccgcaagaag catgagtgga tccagaaggg ctgtgagact gccgccattc 1501 gtgtgaatag ttcttgtccg gcgctcggcg agaagggcaa caatgccgcc cagatgaaga 1561 acggcgccgc gaacagtggt gccggcagtg tgataagcgc ctccacggcg gccaccggct 1621 cctcgggagc accggtgacg gagcccaatg tgatcagcac gcgggcaccg cacgccaccg 1681 gccaagcgaa gccggatgcg gaggccgcca gtggcgtcca cacggacggc aaaatcggaa 1741 acgccgagct ttcgcacgcg gaggcggaaa acaagaacgt gggcgtggcc tttggcttca 1801 tggtgcccat ctgcctggtg ttcgccgtaa cgctgtggct cttctacgcg taccgcaatc 1861 cgcacaccaa gagcggccag ctgctcatcc agttccgtcc cagccagtgg tcatggaggc 1921 gtggcgaggc ccgctacacg gcggccacga tacacatgta gggggtgatc gccggagacg 1981 tcagaggggt acagagatcg cgagacgtgg gagggagctg cagctaaata taccgacgaa 2041 gaaccaacca accaacctac caattgaacc ccaaatcccg atccctgatg gagcagtgtc 2101 gagaactaaa gggaactgag aagcaattat cgccatcaaa tacgattttt caccacatgg 2161 attaccttaa ccaaccgagc aaagtgccaa tcgcagatcc tatctataat gtgatgttcc 2221 atgtccacac gtcaaactcg aaaaaataga aaaatagaga ttttgaactg attgttgaga 2281 tttagctcag accgctgccg aaactgaaaa caaaagcaat ctagatgtgt agacttcccg 2341 agtcccagtc ccccgaaaac tgctcaaaac aacagaaaca aaaagaaaga aaaaaatata 2401 taacaaaaaa caaaactaaa aaagacgact ggcaacagca tgaagtgatc tgatctgtta 2461 atgtatcttt ttaccttttt accgtatcgc ctgccccaaa aaaaaagaga agaaaggaga 2521 aatacccccg aagacaacta catatattgt ataactacgc tcagaccaac ggctcccacc 2581 aggccacgca cacacaccta atacctaacc taaagcacct ttaacacacg caacacacaa 2641 cacacacaac atacacacac acacaccgcg gacacagggc aaagtgcttt caattgtttc 2701 atagttcaat ttttttaggg tttttatctt actctgtact ctgtactatc taccaactat 2761 ccactatcaa caagctggaa aaaaagaaag aaggaaaaac cgaggaaggg ctgtatattt 2821 tttgtgtgcg tgcgcgtttt gctggactct tcgccaaaag ttcttcctca gtctgtgtaa 2881 tttttttttg tttgttctcg tttgttttat tttaagtgtg tgtagctctt ggcaaacaat 2941 tacgggataa atgtattact gtgaacactc ggcgcagttt ttcatactgt attatacgcg 3001 atttgtatga aagttttatg tgtgtatatg cgtgcacgga aatcacattt gtttgcgagc 3061 acgcatggcc cttatattat atatatatat gtatacagat actttatata tacatgaagt 3121 atacatggat atatccaaga caacctcttc tttttgttag tatttttttc tattaattaa 3181 tattacaaat gaaacaaaag aaaccaagaa aataaactta tattaatgaa tataaaacta 3241 taactaaatg cggtgtgcaa agctaaacta aaaacgaaaa actaaaaaca taattaacta 3301 agtaagggag attggaacaa ggagaggaga ttaaaatatg taatatcaat aaaatcaaac 3361 agattaaaca gaacaaaaat gaaccccaag catgcaagcg acaacaacta agaaaattgt 3421 ataacaatgt attttgataa agaaatgaaa cttgtatttt aagctcttct tatgtataca 3481 tgataattta aataaaaaga aaaaaaacat actcgaaaat gaa