Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_017146829 3541 bp mRNA linear INV 09-DEC-2024 transcript variant X1, mRNA. ACCESSION XM_017146829 VERSION XM_017146829.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017146829.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3541 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3541 /gene="l(1)G0289" /note="lethal (1) G0289; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108060898" CDS 84..1979 /gene="l(1)G0289" /codon_start=1 /product="plexin domain-containing protein 2 isoform X1" /protein_id="XP_017002318.2" /db_xref="GeneID:108060898" /translation="MAKSVGGACAQIAVLLAIFCSASALSKRDTYELLDTKLPVVDTY GVVPLATDQLHRQRRALSVDAKAIAKLEPANATAEVGAAVAAAGGGAAAAAETTVTTV DNKAAAGGSVSYNVHNVGVNGTGQRKTYSEVAAAAAATVDSSTTNPNINVAPKKQTQL TQSSYPKKVAPSVLAAVPSSTDRSPASIDVDVSKVDVPDEEIEQSWKNESLVRSEDFH DYYNSVLYVNKEEMASLWAQLKTTPENTMLSSSHRRAMTVELKFDFPFYGHYVRNITV ATGGFLYTGEYVHSWLAATQYIAPLMANFDTSMSNDSFVRVQDNGTAFVAVWENVTLQ DKPDFGKFSFSVTLHQSGDIVFAYLQVPTLINSIQDKEHPVKVGLSDAYIIDKHLYFA RRKTIYEYHRVTFQQGEITNSTIIKLAAQPTCLGYSDCNACINHNTTFTCLWCSALNR CSTGTDRKKHEWIQKGCETAAIRVNSSCPALGEKGNNAAQMKNGAANSGAGSVISAST AATGSSGAPVTEPNVISTRAPHATGQAKPDAEAASGVHTDGKIGNAELSHAEAENKNV GVAFGFMVPICLVFAVTLWLFYAYRNPHTKSGQLLIQSKHLHQFRPSQWSWRRGEARY TAATIHM" misc_feature 1350..1475 /gene="l(1)G0289" /note="Plexin repeat; Region: PSI; pfam01437" /db_xref="CDD:396154" polyA_site 3541 /gene="l(1)G0289" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 atactcttca catcgctagt ttctttttgc ctcactattc attccatttc aacggcggca 61 gaaacagaaa taacggttga acaatggcga agagtgtcgg tggtgcgtgc gcgcaaatcg 121 cggtcctttt ggccatattc tgcagtgcat cggccctgtc gaaacgggat acctacgagc 181 tcctggacac caagctccca gtcgtcgata cctatggagt agtgcctctt gcgacggacc 241 agctgcaccg ccaaaggcgg gccctttcgg tggatgccaa ggcgattgcc aagctcgagc 301 ccgccaatgc cactgcggag gtgggagcag cggttgctgc ggctggagga ggagctgctg 361 ccgccgccga gacgacggtg accacggtgg acaacaaggc agctgcagga ggcagtgttt 421 cctacaacgt tcacaatgtc ggagtcaatg gcaccgggca gcgaaagact tacagcgaag 481 tggctgcagc tgcggcggcg acagtcgact caagcaccac caaccccaac atcaatgtgg 541 cccccaagaa gcagacccag ttgacccagt ccagctatcc caagaaggtg gccccatccg 601 tcttggccgc cgtccccagc agcacggatc gctcgccggc cagcatcgat gtcgatgtgt 661 ccaaggtgga cgtgcccgac gaggagatcg agcagtcgtg gaagaacgaa tcgctggtgc 721 gcagcgagga cttccacgac tactacaaca gcgtgctcta cgtcaacaag gaggagatgg 781 cctcgctgtg ggcccaactc aagacgacgc ccgagaacac catgctatcc tcctcccacc 841 gacgcgccat gaccgttgag ctcaagttcg acttcccctt ctacggccac tatgtgcgca 901 acattacggt ggccaccggc ggatttctct acaccggcga gtacgtccac tcttggctgg 961 cggccaccca gtacatcgcc cccctcatgg ctaactttga caccagcatg tccaacgact 1021 cgtttgtccg agtccaagac aacggaaccg ccttcgtcgc cgtgtgggag aatgtgacgc 1081 tgcaggataa gccggatttc ggcaagttct cgttcagcgt gacgctgcac cagagcggcg 1141 acatcgtctt cgcctacctg caggtaccga cgctcatcaa ttccattcag gacaaggagc 1201 atccggtcaa ggttggcctc tccgacgcct acatcatcga caagcacctc tactttgccc 1261 gccgaaagac aatctacgag taccaccgag tcaccttcca gcagggggag atcaccaact 1321 ccaccatcat caagctggcc gcccagccca cctgccttgg ctacagtgac tgcaatgcgt 1381 gcatcaacca caacacaacg tttacgtgcc tctggtgctc ggccctgaat cgctgctcca 1441 cgggcaccga ccgcaagaag catgagtgga tccagaaggg ctgtgagact gccgccattc 1501 gtgtgaatag ttcttgtccg gcgctcggcg agaagggcaa caatgccgcc cagatgaaga 1561 acggcgccgc gaacagtggt gccggcagtg tgataagcgc ctccacggcg gccaccggct 1621 cctcgggagc accggtgacg gagcccaatg tgatcagcac gcgggcaccg cacgccaccg 1681 gccaagcgaa gccggatgcg gaggccgcca gtggcgtcca cacggacggc aaaatcggaa 1741 acgccgagct ttcgcacgcg gaggcggaaa acaagaacgt gggcgtggcc tttggcttca 1801 tggtgcccat ctgcctggtg ttcgccgtaa cgctgtggct cttctacgcg taccgcaatc 1861 cgcacaccaa gagcggccag ctgctcatcc agtccaagca tttacatcag ttccgtccca 1921 gccagtggtc atggaggcgt ggcgaggccc gctacacggc ggccacgata cacatgtagg 1981 gggtgatcgc cggagacgtc agaggggtac agagatcgcg agacgtggga gggagctgca 2041 gctaaatata ccgacgaaga accaaccaac caacctacca attgaacccc aaatcccgat 2101 ccctgatgga gcagtgtcga gaactaaagg gaactgagaa gcaattatcg ccatcaaata 2161 cgatttttca ccacatggat taccttaacc aaccgagcaa agtgccaatc gcagatccta 2221 tctataatgt gatgttccat gtccacacgt caaactcgaa aaaatagaaa aatagagatt 2281 ttgaactgat tgttgagatt tagctcagac cgctgccgaa actgaaaaca aaagcaatct 2341 agatgtgtag acttcccgag tcccagtccc ccgaaaactg ctcaaaacaa cagaaacaaa 2401 aagaaagaaa aaaatatata acaaaaaaca aaactaaaaa agacgactgg caacagcatg 2461 aagtgatctg atctgttaat gtatcttttt acctttttac cgtatcgcct gccccaaaaa 2521 aaaagagaag aaaggagaaa tacccccgaa gacaactaca tatattgtat aactacgctc 2581 agaccaacgg ctcccaccag gccacgcaca cacacctaat acctaaccta aagcaccttt 2641 aacacacgca acacacaaca cacacaacat acacacacac acaccgcgga cacagggcaa 2701 agtgctttca attgtttcat agttcaattt ttttagggtt tttatcttac tctgtactct 2761 gtactatcta ccaactatcc actatcaaca agctggaaaa aaagaaagaa ggaaaaaccg 2821 aggaagggct gtatattttt tgtgtgcgtg cgcgttttgc tggactcttc gccaaaagtt 2881 cttcctcagt ctgtgtaatt tttttttgtt tgttctcgtt tgttttattt taagtgtgtg 2941 tagctcttgg caaacaatta cgggataaat gtattactgt gaacactcgg cgcagttttt 3001 catactgtat tatacgcgat ttgtatgaaa gttttatgtg tgtatatgcg tgcacggaaa 3061 tcacatttgt ttgcgagcac gcatggccct tatattatat atatatatgt atacagatac 3121 tttatatata catgaagtat acatggatat atccaagaca acctcttctt tttgttagta 3181 tttttttcta ttaattaata ttacaaatga aacaaaagaa accaagaaaa taaacttata 3241 ttaatgaata taaaactata actaaatgcg gtgtgcaaag ctaaactaaa aacgaaaaac 3301 taaaaacata attaactaag taagggagat tggaacaagg agaggagatt aaaatatgta 3361 atatcaataa aatcaaacag attaaacaga acaaaaatga accccaagca tgcaagcgac 3421 aacaactaag aaaattgtat aacaatgtat tttgataaag aaatgaaact tgtattttaa 3481 gctcttctta tgtatacatg ataatttaaa taaaaagaaa aaaaacatac tcgaaaatga 3541 a