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LOCUS XM_017146819 4651 bp mRNA linear INV 09-DEC-2024 subunit ruby (rb), transcript variant X3, mRNA. ACCESSION XM_017146819 VERSION XM_017146819.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017146819.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4651 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4651 /gene="rb" /note="adaptor related protein complex 3 subunit ruby; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108060893" CDS 307..3735 /gene="rb" /codon_start=1 /product="AP-3 complex subunit beta-2 isoform X2" /protein_id="XP_017002308.2" /db_xref="GeneID:108060893" /translation="MQQNTASNPFAMSAYVERPQMGLDVEFGADPASGAAFFQSDGRK HDDLKQMLDSNKDGLKLEAMKRIIGMIARGRDASDLFPAVVKNVVSKNIEVKKLVYVY LVRYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSIRVSMIVPIVMLAIRDSA ADLSPYVRKTAAHAIPKLYSLDAEQKDELVMVIEKLLSDRTTLVVGSAVMAFDEVCPE RVDLIHKNYRKLCNLLVDVDEWGQVIIINMLTRYARTQFVDPNADEEELLNDGLGEAP VNERFYDESSHSSSHSDDGSSDEESKQKSRAQNNNNNGGSSPSNSYHIDVDHRLLLRQ TKPLLQSRNASVVMAVAQLYHHVAPKNEVQLIAKALIRLLRSHKEVQSVVLNCIASMS TRRKAIFEPHLKSFFVRTSDPTHLKLLKLDILTNLASAGSISIILREFQTYISSSDRS FVAATIQAIGRCASSIKEVTETCLSGLVHLLSNHDEHVVAESVVVIKRLLQTKAAEHF EIITQMAKLIDYINVPAARAAIIWLIGEYNEKVPLIAPDVLRKMAKSFVDEQDVVKLQ VLNLGVKLYLTNPEQTSLLCQYVFTLARYDPNYDVRDRARFLRQIIFPASGSSSVLSQ HARQVFLASKPAPVPESKYREGNTFQLGSLSHYLNMPAAGYKELPAFPAIPPDSSVRN IAGFMPDKLPGGESPKETSGGAKGKEKGAAAGGEKGFLSESEDKSSAYSESGSSSGSG SGTSDSESDSDGSGSSDEEEQKQPAKVSAQKEQLIDAGNNEVAVATPTKATTNNNNNA AGFSGTSDSEDSSAYSGSSSEDSDSGSDNEKQPKETETETKEKQEKKAASKSNLDLLL DLDDIPPIGPVMTPSLGGFLTPGTPLMAGQAQAPPLQPQHARNRVELVGPSHIEFKHK ELLNKVSGHGLQLAYRFTRSPHLYSSSMCSIELQFQNRGEKEITAIRLGPSTLPTGMQ LNEFAPVTILQPQQTASGVLGVDFNDSTHAVDLELISSAGSSRLQLKPPVGELVRSVQ IGESCHREERAKLRGMNEHQCELRGLRRDLIDVSALRQKVFESINVAHTHSSSNGQLH CFAGQTLSSKSLVLLTLHWQTEEALTLLVNCEKMVIGSMVLNELRNALQLSFAM" misc_feature 424..2154 /gene="rb" /note="Adaptin N terminal region; Region: Adaptin_N; pfam01602" /db_xref="CDD:396262" misc_feature 448..525 /gene="rb" /note="HEAT repeat [structural motif]; Region: HEAT repeat" /db_xref="CDD:293787" misc_feature 655..738 /gene="rb" /note="HEAT repeat [structural motif]; Region: HEAT repeat" /db_xref="CDD:293787" misc_feature 745..843 /gene="rb" /note="HEAT repeat [structural motif]; Region: HEAT repeat" /db_xref="CDD:293787" misc_feature 868..948 /gene="rb" /note="HEAT repeat [structural motif]; Region: HEAT repeat" /db_xref="CDD:293787" misc_feature 2887..3309 /gene="rb" /note="Clathrin-adaptor complex-3 beta-1 subunit C-terminal; Region: AP3B1_C; pfam14796" /db_xref="CDD:464319" polyA_site 4651 /gene="rb" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 atcgccccaa cgctagttgc tcaacactgt aaatcaagct aaaataaaat gcaaaaattg 61 gccgaatttt cgccacaaat aatagttttc ccttgagaaa ttcgcaagct gcgtggcagg 121 acgagcagct gaccaggccg atcctctcgg ggattcgcaa aagagcatac aggtttcacg 181 gcggacgccc ttgcccagcg gaaaaaaact gccaactccc acacacaaaa aaaagaaaga 241 aagaaaagaa agtaaaaggt caagtggtca tccgaatccg gggataatcc cagaatccca 301 gccagcatgc agcagaacac ggccagcaat ccgttcgcca tgtccgccta cgtggagcgg 361 ccccagatgg gcctggacgt ggagttcggg gcggatcccg cgagcggagc agccttcttc 421 cagtcggacg gacgcaagca cgacgatctc aagcagatgc tggacagcaa caaggacgga 481 ctgaagctgg aggccatgaa gcggatcatc gggatgatag cccgcggcag ggatgccagc 541 gacctcttcc cggccgtcgt caagaacgtg gtgtccaaga atatcgaggt gaagaagctg 601 gtctatgtct atctggtgag atatgccgag gagcagcagg atctggccct gctctccatt 661 tccacctttc agcgggccct caaggatccg aatcaactga tacgcgcctc tgcgctgcgc 721 gtgctctcct cgattcgggt cagcatgatc gtgcccatcg ttatgctggc catccgcgac 781 agcgccgccg atctgagtcc ctatgtgcgc aagacggcgg cccacgccat ccccaagctg 841 tactccctgg acgcggagca gaaggacgag ctggtgatgg tcatcgagaa gctgctctcg 901 gatcgcacca ctctggtcgt gggttccgca gtgatggcgt ttgatgaggt ctgcccggaa 961 cgcgtggatt tgatccacaa gaactaccgc aagctgtgca atctgctcgt ggacgtggac 1021 gagtggggcc aggtgatcat catcaacatg ctcacccgct atgcgcgcac ccagttcgtg 1081 gatcccaatg ccgatgagga ggagctgctc aacgatggtc tgggcgaggc gcccgtgaac 1141 gaacgcttct acgacgaatc ctcgcactcc tcctcgcaca gcgacgatgg gagcagcgat 1201 gaggagtcga agcagaagtc tcgtgcccag aataacaaca ataatggcgg cagttccccg 1261 agcaacagct accacatcga tgtggatcat cgcctgctgt tgcggcaaac gaaaccgctg 1321 ctgcagtcgc gaaatgcctc cgtggtgatg gccgtggcgc agctctacca tcatgtggcg 1381 cccaagaatg aagtgcagct gattgccaag gcgctgatac gattgctgcg ctcgcacaag 1441 gaggtgcaga gcgtggtgct caactgcatt gcctcgatgt cgacccgacg caaggccatc 1501 ttcgagccgc acctcaagtc gttcttcgtg cgcaccagcg atcccacgca tttgaagctc 1561 ctcaagctgg atattctcac gaatttggcg tcggccggca gcatttcgat tatcctacgc 1621 gaatttcaga cctacatctc cagcagcgac cgttccttcg tggcggccac cattcaggcc 1681 atcggaaggt gtgcgtccag catcaaggag gtcaccgaga cctgtctgag tggcctggtg 1741 catctgctgt ccaatcacga tgagcacgtg gtggccgaga gcgtggtggt gatcaagcgc 1801 ctgctgcaaa cgaaagccgc cgagcacttt gagatcatca cccagatggc caagctgatt 1861 gactacatca atgtgccggc agccagggcg gccatcattt ggctaatagg cgagtacaac 1921 gagaaggtgc cgctgattgc gcccgatgtg ctgcgcaaaa tggccaagtc gtttgtggac 1981 gagcaggatg tggtcaagct gcaggtcctc aatctcggtg tgaagctcta tctgaccaat 2041 ccggagcaga cttcgctgct ttgccagtac gttttcacgc tggcccgcta cgatcccaac 2101 tacgatgtgc gcgatcgcgc ccgcttcctg cgacagatca tcttcccggc cagcggctca 2161 agttcggtgc tcagtcagca cgcccgccag gtgttcctgg ccagcaagcc ggcccccgtg 2221 cccgagagca agtaccgcga gggcaacacc tttcagctgg gctcgctatc gcactacctg 2281 aacatgccgg cggccggcta caaggagctg cccgcctttc cggccattcc gccggattcg 2341 tcggtgcgca acatagccgg tttcatgccg gacaagctgc ccggcgggga gtcgcccaag 2401 gaaacctccg gcggggctaa gggcaaggag aagggggctg ccgctggcgg ggagaagggc 2461 ttcctctccg agtcggagga caagtcgtcg gcgtactcgg agtcagggag cagcagcggc 2521 agtggcagcg gcaccagcga cagcgagtcg gatagcgacg gcagcgggag cagcgacgag 2581 gaggagcaga agcagcccgc aaaggtttcc gcgcagaagg agcagctcat tgatgctgga 2641 aacaatgaag tggcggttgc aactcccaca aaagccacta cgaacaacaa taacaatgcg 2701 gctgggttct ctggaacctc ggacagcgag gattcatcgg cctacagcgg cagcagtagt 2761 gaagacagcg attccggcag cgacaacgaa aagcagccca aggaaacgga aacggaaacg 2821 aaggagaagc aggagaagaa ggcagcctcc aaaagcaacc tggatttgct gctcgatctg 2881 gatgacattc cgcccattgg tcctgtgatg acgccctcgc tgggaggctt tcttacgcca 2941 ggcactccac tgatggctgg gcaggcgcag gctcctccgc tgcagccgca gcacgcccgc 3001 aatcgcgtgg agctggtggg tccctcgcac atcgagttca agcacaagga gctgctcaac 3061 aaggtcagcg gtcacgggct gcagctggcc taccgcttca cccgctcgcc gcatctctac 3121 tcctcgagca tgtgctccat tgagctgcag ttccagaatc gtggcgaaaa ggagatcacg 3181 gccattcgcc tgggcccaag caccttgcca acgggcatgc agctgaatga gtttgccccg 3241 gtcaccatcc tccagccgca gcaaacggcc agcggagtgc tgggcgtgga cttcaatgac 3301 tccacgcacg ccgtcgacct ggagctaatc tccagtgcgg gcagctcgcg gctgcagctg 3361 aagccgccgg tgggcgagct ggtgagatcc gtccagatcg gcgagagctg tcatcgcgag 3421 gagcgcgcca agctgcgcgg catgaacgag caccagtgcg agctgcgcgg cctaaggcgc 3481 gatttaatcg atgtatccgc cctgcggcaa aaggtcttcg agtccatcaa tgtggcgcac 3541 acgcacagct cttccaacgg ccagctgcac tgcttcgccg gccagacgct gagctccaag 3601 agtctcgtgc tcctcaccct ccactggcag acggaggagg cgctcacgct gctggtcaac 3661 tgcgagaaga tggtcatcgg gtccatggtg ctcaacgaac tgcgcaacgc cctgcagctc 3721 agcttcgcca tgtaaggaag cgaaagtcgg tgggcgaaac ctactcaact gagaacaaag 3781 caaagcgaag ccgcctcact acgtaaacct aagcattcgt atttagctat atactgtaag 3841 gggcggggcg aatctttaaa ccgtttcaag cggcatatgc aagtccacat tttttatatt 3901 tactaaccga aagattcgat cgaaacttta attaattaaa ggtgcaatgt aacgatcgaa 3961 tctctggttt aagagtggaa tcatttgcga actataatat tatagaattc cctttaaatt 4021 gttattgaaa acttaaatgc tacaaatcta tatttattgt tattcacttt cgcaaatatt 4081 ctctaatatt ttctccatcc gagaatcgcc atttcccttt acaaatggac gaactcaacc 4141 tgagattaac atagtttcca gttcgccccg ccctaatatg aatcctgatt ctatcgcttt 4201 taatattcct atatacaaac tgcaaccaca aattccagat gaagcgagat gaactcgact 4261 tgttgccaat ccagatccaa atccaaatca aatcctccaa ttagctagac gtgtgtgtaa 4321 tgtgtgcatg agtaatcgaa acgtatttgt aaagtgtttg atgttgtaaa tctgttgcct 4381 tcgtgctcta tgcggccttc ttcaaatcgt agcaaagaca aacgaatatc gaatctatat 4441 attatatatt atatgcaaac aatatacagc gcaaaatctg gcagatgaaa agatgaaaaa 4501 ggaaagaacg taacaataat aagaatacca aaatgttaat ctgccttctg cctgaaaacc 4561 taagctgaat ctccgcattg aagggctgaa ataaaagctt acattttaaa ttgataaagc 4621 cttacctgtt gtgggttctt gagtaaaaat a