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LOCUS XM_017146818 4655 bp mRNA linear INV 09-DEC-2024 subunit ruby (rb), transcript variant X1, mRNA. ACCESSION XM_017146818 VERSION XM_017146818.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017146818.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4655 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4655 /gene="rb" /note="adaptor related protein complex 3 subunit ruby; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108060893" CDS 308..3739 /gene="rb" /codon_start=1 /product="AP-3 complex subunit beta-2 isoform X1" /protein_id="XP_017002307.2" /db_xref="GeneID:108060893" /translation="MQQNTASNPFAMSAYVERPQMGLDVEFGADPASGAAFFQSDGRK HDDLKQMLDSNKDGLKLEAMKRIIGMIARGRDASDLFPAVVKNVVSKNIEVKKLVYVY LVRYAEEQQDLALLSISTFQRALKDPNQLIRASALRVLSSIRVSMIVPIVMLAIRDSA ADLSPYVRKTAAHAIPKLYSLDAEQKDELVMVIEKLLSDRTTLVVGSAVMAFDEVCPE RVDLIHKNYRKLCNLLVDVDEWGQVIIINMLTRYARTQFVDPNADEEELLNDGLGEAP VNERFYDESSHSSSHSDDGSSDEESKQKSRAQNNNNNGGSSPSNSYHIDVDHRLLLRQ TKPLLQSRNASVVMAVAQLYHHVAPKNEVQLIAKALIRLLRSHKEVQSVVLNCIASMS TRRKAIFEPHLKSFFVRTSDPTHLKLLKLDILTNLASAGSISIILREFQTYISSSDRS FVAATIQAIGRCASSIKEVTETCLSGLVHLLSNHDEHVVAESVVVIKRLLQTKAAEHF EIITQMAKLIDYINVPAARAAIIWLIGEYNEKVPLIAPDVLRKMAKSFVDEQDVVKLQ VLNLGVKLYLTNPEQTSLLCQYVFTLARYDPNYDVRDRARFLRQIIFPASGSSSVLSQ HARQVFLASKPAPVPESKYREGNTFQLGSLSHYLNMPAAGYKELPAFPAIPPDSSVRN IAGFMPDKLPGGESPKETSGGAKGKEKGAAAGGEKGFLSESEDKSSAYSESGSSSGSG SGTSDSESDSDGSGSSDEEEQKQPAKVSAQKEQLIDAGNNEVAVATPTKATTNNNNNA AGFSGTSDSEDSSAYSGSSSEDSDSGSDNEKQPKETETETKEKQEKKAASKSNLDLLL DLDDIPPIGPVMTPSLGGFLTPAGTPLMAGQAQAPPLQPQHARNRVELVGPSHIEFKH KELLNKVSGHGLQLAYRFTRSPHLYSSSMCSIELQFQNRGEKEITAIRLGPSTLPTGM QLNEFAPVTILQPQQTASGVLGVDFNDSTHAVDLELISSAGSSRLQLKPPVGELVRSV QIGESCHREERAKLRGMNEHQCELRGLRRDLIDVSALRQKVFESINVAHTHSSSNGQL HCFAGQTLSSKSLVLLTLHWQTEEALTLLVNCEKMVIGSMVLNELRNALQLSFAM" misc_feature 425..2155 /gene="rb" /note="Adaptin N terminal region; Region: Adaptin_N; pfam01602" /db_xref="CDD:396262" misc_feature 449..526 /gene="rb" /note="HEAT repeat [structural motif]; Region: HEAT repeat" /db_xref="CDD:293787" misc_feature 656..739 /gene="rb" /note="HEAT repeat [structural motif]; Region: HEAT repeat" /db_xref="CDD:293787" misc_feature 746..844 /gene="rb" /note="HEAT repeat [structural motif]; Region: HEAT repeat" /db_xref="CDD:293787" misc_feature 869..949 /gene="rb" /note="HEAT repeat [structural motif]; Region: HEAT repeat" /db_xref="CDD:293787" misc_feature 2888..3313 /gene="rb" /note="Clathrin-adaptor complex-3 beta-1 subunit C-terminal; Region: AP3B1_C; pfam14796" /db_xref="CDD:464319" polyA_site 4655 /gene="rb" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tatcgcccca acgctagttg ctcaacactg taaatcaagc taaaataaaa tgcaaaaatt 61 ggccgaattt tcgccacaaa taatagtttt cccttgagaa attcgcaagc tgcgtggcag 121 gacgagcagc tgaccaggcc gatcctctcg gggattcgca aaagagcata caggtttcac 181 ggcggacgcc cttgcccagc ggaaaaaaac tgccaactcc cacacacaaa aaaaagaaag 241 aaagaaaaga aagtaaaagg tcaagtggtc atccgaatcc ggggataatc ccagaatccc 301 agccagcatg cagcagaaca cggccagcaa tccgttcgcc atgtccgcct acgtggagcg 361 gccccagatg ggcctggacg tggagttcgg ggcggatccc gcgagcggag cagccttctt 421 ccagtcggac ggacgcaagc acgacgatct caagcagatg ctggacagca acaaggacgg 481 actgaagctg gaggccatga agcggatcat cgggatgata gcccgcggca gggatgccag 541 cgacctcttc ccggccgtcg tcaagaacgt ggtgtccaag aatatcgagg tgaagaagct 601 ggtctatgtc tatctggtga gatatgccga ggagcagcag gatctggccc tgctctccat 661 ttccaccttt cagcgggccc tcaaggatcc gaatcaactg atacgcgcct ctgcgctgcg 721 cgtgctctcc tcgattcggg tcagcatgat cgtgcccatc gttatgctgg ccatccgcga 781 cagcgccgcc gatctgagtc cctatgtgcg caagacggcg gcccacgcca tccccaagct 841 gtactccctg gacgcggagc agaaggacga gctggtgatg gtcatcgaga agctgctctc 901 ggatcgcacc actctggtcg tgggttccgc agtgatggcg tttgatgagg tctgcccgga 961 acgcgtggat ttgatccaca agaactaccg caagctgtgc aatctgctcg tggacgtgga 1021 cgagtggggc caggtgatca tcatcaacat gctcacccgc tatgcgcgca cccagttcgt 1081 ggatcccaat gccgatgagg aggagctgct caacgatggt ctgggcgagg cgcccgtgaa 1141 cgaacgcttc tacgacgaat cctcgcactc ctcctcgcac agcgacgatg ggagcagcga 1201 tgaggagtcg aagcagaagt ctcgtgccca gaataacaac aataatggcg gcagttcccc 1261 gagcaacagc taccacatcg atgtggatca tcgcctgctg ttgcggcaaa cgaaaccgct 1321 gctgcagtcg cgaaatgcct ccgtggtgat ggccgtggcg cagctctacc atcatgtggc 1381 gcccaagaat gaagtgcagc tgattgccaa ggcgctgata cgattgctgc gctcgcacaa 1441 ggaggtgcag agcgtggtgc tcaactgcat tgcctcgatg tcgacccgac gcaaggccat 1501 cttcgagccg cacctcaagt cgttcttcgt gcgcaccagc gatcccacgc atttgaagct 1561 cctcaagctg gatattctca cgaatttggc gtcggccggc agcatttcga ttatcctacg 1621 cgaatttcag acctacatct ccagcagcga ccgttccttc gtggcggcca ccattcaggc 1681 catcggaagg tgtgcgtcca gcatcaagga ggtcaccgag acctgtctga gtggcctggt 1741 gcatctgctg tccaatcacg atgagcacgt ggtggccgag agcgtggtgg tgatcaagcg 1801 cctgctgcaa acgaaagccg ccgagcactt tgagatcatc acccagatgg ccaagctgat 1861 tgactacatc aatgtgccgg cagccagggc ggccatcatt tggctaatag gcgagtacaa 1921 cgagaaggtg ccgctgattg cgcccgatgt gctgcgcaaa atggccaagt cgtttgtgga 1981 cgagcaggat gtggtcaagc tgcaggtcct caatctcggt gtgaagctct atctgaccaa 2041 tccggagcag acttcgctgc tttgccagta cgttttcacg ctggcccgct acgatcccaa 2101 ctacgatgtg cgcgatcgcg cccgcttcct gcgacagatc atcttcccgg ccagcggctc 2161 aagttcggtg ctcagtcagc acgcccgcca ggtgttcctg gccagcaagc cggcccccgt 2221 gcccgagagc aagtaccgcg agggcaacac ctttcagctg ggctcgctat cgcactacct 2281 gaacatgccg gcggccggct acaaggagct gcccgccttt ccggccattc cgccggattc 2341 gtcggtgcgc aacatagccg gtttcatgcc ggacaagctg cccggcgggg agtcgcccaa 2401 ggaaacctcc ggcggggcta agggcaagga gaagggggct gccgctggcg gggagaaggg 2461 cttcctctcc gagtcggagg acaagtcgtc ggcgtactcg gagtcaggga gcagcagcgg 2521 cagtggcagc ggcaccagcg acagcgagtc ggatagcgac ggcagcggga gcagcgacga 2581 ggaggagcag aagcagcccg caaaggtttc cgcgcagaag gagcagctca ttgatgctgg 2641 aaacaatgaa gtggcggttg caactcccac aaaagccact acgaacaaca ataacaatgc 2701 ggctgggttc tctggaacct cggacagcga ggattcatcg gcctacagcg gcagcagtag 2761 tgaagacagc gattccggca gcgacaacga aaagcagccc aaggaaacgg aaacggaaac 2821 gaaggagaag caggagaaga aggcagcctc caaaagcaac ctggatttgc tgctcgatct 2881 ggatgacatt ccgcccattg gtcctgtgat gacgccctcg ctgggaggct ttcttacgcc 2941 agcaggcact ccactgatgg ctgggcaggc gcaggctcct ccgctgcagc cgcagcacgc 3001 ccgcaatcgc gtggagctgg tgggtccctc gcacatcgag ttcaagcaca aggagctgct 3061 caacaaggtc agcggtcacg ggctgcagct ggcctaccgc ttcacccgct cgccgcatct 3121 ctactcctcg agcatgtgct ccattgagct gcagttccag aatcgtggcg aaaaggagat 3181 cacggccatt cgcctgggcc caagcacctt gccaacgggc atgcagctga atgagtttgc 3241 cccggtcacc atcctccagc cgcagcaaac ggccagcgga gtgctgggcg tggacttcaa 3301 tgactccacg cacgccgtcg acctggagct aatctccagt gcgggcagct cgcggctgca 3361 gctgaagccg ccggtgggcg agctggtgag atccgtccag atcggcgaga gctgtcatcg 3421 cgaggagcgc gccaagctgc gcggcatgaa cgagcaccag tgcgagctgc gcggcctaag 3481 gcgcgattta atcgatgtat ccgccctgcg gcaaaaggtc ttcgagtcca tcaatgtggc 3541 gcacacgcac agctcttcca acggccagct gcactgcttc gccggccaga cgctgagctc 3601 caagagtctc gtgctcctca ccctccactg gcagacggag gaggcgctca cgctgctggt 3661 caactgcgag aagatggtca tcgggtccat ggtgctcaac gaactgcgca acgccctgca 3721 gctcagcttc gccatgtaag gaagcgaaag tcggtgggcg aaacctactc aactgagaac 3781 aaagcaaagc gaagccgcct cactacgtaa acctaagcat tcgtatttag ctatatactg 3841 taaggggcgg ggcgaatctt taaaccgttt caagcggcat atgcaagtcc acatttttta 3901 tatttactaa ccgaaagatt cgatcgaaac tttaattaat taaaggtgca atgtaacgat 3961 cgaatctctg gtttaagagt ggaatcattt gcgaactata atattataga attcccttta 4021 aattgttatt gaaaacttaa atgctacaaa tctatattta ttgttattca ctttcgcaaa 4081 tattctctaa tattttctcc atccgagaat cgccatttcc ctttacaaat ggacgaactc 4141 aacctgagat taacatagtt tccagttcgc cccgccctaa tatgaatcct gattctatcg 4201 cttttaatat tcctatatac aaactgcaac cacaaattcc agatgaagcg agatgaactc 4261 gacttgttgc caatccagat ccaaatccaa atcaaatcct ccaattagct agacgtgtgt 4321 gtaatgtgtg catgagtaat cgaaacgtat ttgtaaagtg tttgatgttg taaatctgtt 4381 gccttcgtgc tctatgcggc cttcttcaaa tcgtagcaaa gacaaacgaa tatcgaatct 4441 atatattata tattatatgc aaacaatata cagcgcaaaa tctggcagat gaaaagatga 4501 aaaaggaaag aacgtaacaa taataagaat accaaaatgt taatctgcct tctgcctgaa 4561 aacctaagct gaatctccgc attgaagggc tgaaataaaa gcttacattt taaattgata 4621 aagccttacc tgttgtgggt tcttgagtaa aaata