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LOCUS XM_017146778 5241 bp mRNA linear INV 09-DEC-2024 protein stuxnet (stx), mRNA. ACCESSION XM_017146778 VERSION XM_017146778.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017146778.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5241 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5241 /gene="stx" /note="ubiquitin-like domain-containing protein stuxnet; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108060870" CDS 786..4028 /gene="stx" /codon_start=1 /product="midnolin homolog" /protein_id="XP_017002267.2" /db_xref="GeneID:108060870" /translation="MDKSAATNSATADGQNEATAAAAGCGSSSNNNASSSSGSSTTSN NNALQRLATTTTSAVVASPMTTINLNISTTTGGNFGVSVEPHISVESLKKIIAKKLKV AKDRICLLHREKELQDGTLRDHNLMDGSKIILIPNVETGLLAQRPENTVMQALESLND SQVNDFLSGKTPLNLSMRLGDHMMLIQLQLSTVNPAGGGGATVSAATGGSTTAAATTT SSSSASAMPAGTGCSTGTSSSSSSSSAVLAVAGGSGSGSTGTGGATTSSSSSSTSSSS RTRSSGQRSSGRIGHGHVHSHQHPSLHAANWHGHGHGHGHSHGHGHGHHHHHHHHHHH HHHNASAVAAGSGGGMSSLRKMYGDLPSSSGAANSGAGTAGAGTTGQAQNGPDLTKLL IKGGIQNIVKSFALKDARPVASNGGGGSSSPGKPPLEPSPIKSLSNLVSSPIKMTAIK NIPLPTTAAASSCSCSSAAASSPSSSASSSGACTAGGCQQDPIAAKLTSCLCTRLPTP SVVPPLVAPPASAAAPVGRSASGATSSPGKCPESSCGGANAGFAARSTGAGVTFSGNS MLHKTGNNRITRTKHRHYHGHGHSHGHSSSSHYYHHSCAGNQSSVNAAAIASSSSSSS SSSSSRRKLEQAMAAAAAGGASSSAGGSSAGSGGSTASTSTASEPEDSLLGVSDTRTL AEASRNLTQTLRKLSKEVFTHKIDLSGAGVVSSSSRSSSSGGSSGSSASSGASGEEPT RKGGSGAVIESMKNHGKGIYSGTFSGTLNPALQDRYGRPKRDISTVIHILNDLLSATP QYGRGARISFEAPTTGSSVSGSGSSGSSGSSSTNSSSSGMHHGSRSKVYSSKHHNCAK CNSRAQQQQQQQSAALASGGCSFRDCPSYHSSSSKASASSKSSSHSCCQAESPSSLVS SQSNGCSCRYRRDDNQGQGEREREHTCQKCTVELANMKTRSKMDQLRLVMQQHKQKRE ARKLKSGPYATPAAASAAGSLSSSAAGGGVQYSAVSALVATPLQPAAGKAAPASNNSS SSNTNASNSNTSTAPATAATAAAAAATAATAAPPSEVSPNHIVEEVDTAA" misc_feature 984..1193 /gene="stx" /note="first ubiquitin-like (Ubl) domain located at the N-terminus of coronavirus SARS-CoV non-structural protein 3 (Nsp3) and related proteins; Region: Ubl1_cv_Nsp3_N-like; cl28922" /db_xref="CDD:475130" polyA_site 5241 /gene="stx" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cgacggactt ttagatgctc tttggcggtt ggcgccgctt gacttgccga aatttcgact 61 ctccaggccg agtgtgtgtg tgtgtgtagt ggttgtgcca gcagagttgt tgcagaaact 121 aactgaaagc aagagcaaga gacgcgtgga gagcagcagc ccaattgaac agaggtgaac 181 aaacacgaat aagaaaagaa gtaaaggaaa aacacaccgg gactcaagca ctaaagtaaa 241 atagcgcaat agccaagcga aatcgggttt ttttttcctc ttcctccttc gcatacatgc 301 gtacctgggc agagattcag atttaccgcc tcccccgccg cctacgttgt tgttgctgtc 361 gttccgccgt cgctctcacg taatccgccc tccgcccccg caccacccca caaactgata 421 gaccgaaaat cgattagcgg cctctcttct tcttcttcgg ccacggcttc ggcgtttgtg 481 tgtgcgttgc gttacgttac ggttaccgtt acgtcgcccg cgcgtgtctc tgccgcctgc 541 gtgtgtgtga gtgcgagtgt gcaaggtgtg gtgtgtatag aaaatcgatt ggcaatttga 601 accgagagct atcgtcgccg cagtcgccgc gtgtgccgtt acgcgatttt caacagatat 661 tgcttttatt tttttgcctg tgaagtcctc tcaagtgagt gatagagaga gagagagagt 721 gagagacgga ctcctctaaa gcctctaaaa aatacaaaag aaaaagataa agaaaaacac 781 cggacatgga taaatcagcg gccacgaact cggccactgc cgatggccaa aacgaggcaa 841 cagcagcagc agctgggtgt ggcagcagca gcaacaacaa cgccagcagc agcagtggta 901 gcagcaccac cagcaacaac aacgccctgc agcgtttggc aacaacaaca acaagtgccg 961 ttgtggcatc cccaatgacg acgatcaacc tgaacatcag caccaccacc ggcggcaact 1021 tcggcgtcag cgtcgagccg cacatcagcg tcgagagtct gaagaagatc atcgccaaga 1081 agctcaaggt ggccaaggat cgcatctgtc tgctgcaccg cgagaaggaa cttcaggatg 1141 gcacgctcag agatcacaac ttaatggacg ggtccaagat cattttgatc ccaaatgtgg 1201 aaactggttt attggctcag cgtcccgaga atacggttat gcaagcgctg gaatcgctta 1261 acgactcgca ggttaatgac ttcctcagcg gcaagacacc gctcaatctg agcatgcggc 1321 tcggcgacca catgatgctc atccagctgc agctgagcac ggttaatccg gcgggtggcg 1381 gtggtgccac agtgtctgcg gccacaggtg gttccaccac cgctgccgcc accacaacgt 1441 catcgtcatc ggcgtctgca atgccagctg gcactggctg ctccaccggc acatcctcat 1501 cctcctcctc gtcgtcggct gtgctggcgg tggcaggagg aagcggaagc ggaagcaccg 1561 gaaccggtgg cgccaccacc tcctcatcct catcatccac ttcatcttcg tcgagaacac 1621 gctcatctgg ccagcgatca agtggaagaa tcggacatgg ccacgtgcac agccaccagc 1681 atccgagcct gcatgccgcc aactggcatg gacatggtca tggacacggg cacagccatg 1741 gccacgggca tgggcatcat catcaccatc accaccacca tcaccaccat catcacaacg 1801 cctcggcggt ggctgcgggc agcggcggtg ggatgtcctc gctgcgcaag atgtacggcg 1861 atttgcccag ctcctcggga gcagctaatt cgggggcagg aaccgccggc gccggcacca 1921 ccgggcaggc ccagaacgga cccgatctca ccaagctgct gatcaagggc ggcatccaga 1981 atatcgtcaa gagcttcgcc ctcaaggatg cacgacctgt ggcctccaat ggcggcggag 2041 gatcatcaag tccgggcaaa cccccgctgg agccctcgcc catcaagtcg ctgtcgaatc 2101 tcgtgtccag tcccatcaag atgacggcca tcaagaacat tcccctgccc acgacggctg 2161 ccgcctcgag ttgcagctgc agctccgccg ccgcctccag cccgtcttct tctgcttctt 2221 ccagtggtgc ctgcaccgcc ggcggctgtc agcaggatcc catagccgcc aagctgacct 2281 cgtgcctgtg cacgcgcctg cccacgccgt cggtggtgcc tccgctggtg gcccctcccg 2341 cctccgccgc tgctccggtg ggcagatctg catcaggagc caccagttcg ccggggaagt 2401 gccccgagtc gagttgcggc ggtgcgaatg ccggatttgc ggcacgttca acgggcgctg 2461 gagtcacctt ctcggggaat tcgatgctgc acaagacggg caataaccgc atcaccagga 2521 ccaagcatcg tcactaccat ggacatggcc acagtcacgg tcacagcagc agtagccact 2581 attaccacca cagctgcgcc ggcaaccagt cgtcggttaa tgcagccgcc attgcctcgt 2641 cttcctcatc ctcctcgtct tcctcgtcgt cgcgtcgcaa gctggaacag gcgatggcag 2701 cagcagcagc aggaggagca tcatcatcag caggaggatc atcagcagga tcaggaggct 2761 caacagctag caccagcaca gctagcgaac ccgaggactc gctgctgggc gtgtcggaca 2821 ccaggactct ggccgaggcc tcgcggaatc tcacccagac actgcgcaaa ctctccaagg 2881 aggtgttcac ccacaagatc gatctgtccg gcgccggcgt ggtgagcagc agcagccgca 2941 gctcgagcag cggtggatcc agcggatcca gtgcatccag tggagccagt ggcgaggagc 3001 cgacgcgcaa gggcggctcg ggagccgtca tcgagtcgat gaagaaccac ggcaagggca 3061 tctactcggg caccttctcg ggcaccctga atccggcgct gcaggatcgc tatgggcggc 3121 ccaagcgcga catctcgacg gtgattcaca ttctcaacga tctgctgagt gccacgccgc 3181 aatatggtcg aggtgcgcgc atcagcttcg aggcaccgac cacgggatcc tcggtatcgg 3241 gttcgggatc ctccggcagc agtggctcct cctcgacgaa ctcctccagc agcgggatgc 3301 atcatgggtc gcgcagcaaa gtgtactcct cgaagcatca caactgcgcc aagtgcaaca 3361 gtcgcgccca gcagcaacag cagcagcagt cggctgctct ggccagcggc ggctgctcct 3421 tccgtgactg ccccagctat cactccagct cctccaaggc ttccgccagc tccaagtcct 3481 cctcgcacag ctgctgccag gcggagtcgc ccagcagttt ggtcagcagt cagagcaacg 3541 gctgcagctg tcgctaccgg cgggatgata accagggtca aggagagcgc gagcgggagc 3601 acacgtgcca gaagtgcacc gtggagctgg ccaacatgaa gacccgctcg aagatggacc 3661 agctgcgcct ggtgatgcag cagcacaagc agaagcggga ggcgcgcaag ctgaagagcg 3721 gtccctatgc cacgcccgcc gcagcctcgg cggctggaag cctctcctcg tcggccgccg 3781 gcggaggagt acagtacagt gccgtgagcg ccctggtggc cacgccactg caaccagctg 3841 ctggaaaagc tgcacccgca agcaacaaca gcagcagcag caacaccaat gccagcaaca 3901 gcaacacttc gacggcaccc gcaacagcag caacggcagc cgcagcagca gcaacagctg 3961 caacagcagc accgcccagc gaagtgtcgc ccaaccacat tgtcgaggag gtggatacgg 4021 cggcctaaag gcagcggcgc catcagccag agctgctgac cctatcctat tttgtagcat 4081 ttactagttt acgcagcagc aacaaagaaa gaagagcaga cgagagatga aggataacaa 4141 gagaaactag aaccacaact aaagcttata ttaatctaga gttagtgctg aacaacacca 4201 attcttaagt tcgagggccg ctcgttcagt tttcccacct ttaaatagag gcaaagggag 4261 gagaatatgc aaaaggagca cccggaaagt cgaaagtcga taagctgtta aattaatttt 4321 aagaccttta aaaaacaaac aaactcgctt cggtccaagc taattatttt ggaagcacat 4381 ggagcggaga gaacaaatga atcagctgct ggaggcgaaa tcctttaatg ttttgtaaaa 4441 taaatttagt gaaatttgtt gtgtgcaacc caggcaaacg caaagttgag caattaacaa 4501 tttgaatcgc aaaagaaaga aatatgaaga agggaaagaa gtaataatgg aaatgattaa 4561 tacatagaat taaatgtaaa gcgtatgcac agactatgct gagtgaaatt gtaagccaaa 4621 gcggtggcaa attttggttg aactaaaacg gaatttagat ttaattttag acacaccaaa 4681 tcaaatcgaa cacacaatca cacacacaca cctggctttg gcagctttat gttatgttta 4741 actttagtaa ccgacgagct gcaactgcag ctgcgaagtg gcgctttaac ctaatttgcc 4801 ttaatagaaa atcgtttttc acctattttt tttgtatact ttatcaccaa gaatgtgttt 4861 cgaaacgcgc cgggaaagac gagcgacgaa ttgaattttg ttcaccaaca acacacctat 4921 actattgaat tagttagtaa gactatgttt tctattcatt ttacacctat aattatgaat 4981 tacacgcata aatattaatt actgattgga ttagcttaag ttgcgcaaca gaagcgtcta 5041 agtagagtta taatttaaac acaagcaatt actttttttt gtcctacacc tactattacc 5101 caaataccca attcaaataa tgcaattagt tgtaggcgag tttaactttt gagttggttt 5161 catttgtctt tgccttgtgt gcaccacaac acaacaatac ttgatttcaa taaatgttta 5221 gtaaatggtt tagttaacta a