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LOCUS XM_017146769 9019 bp mRNA linear INV 09-DEC-2024 entrainment (nocte), transcript variant X2, mRNA. ACCESSION XM_017146769 VERSION XM_017146769.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017146769.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..9019 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..9019 /gene="nocte" /note="no circadian temperature entrainment; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108060861" CDS 437..7222 /gene="nocte" /codon_start=1 /product="neurogenic protein mastermind isoform X1" /protein_id="XP_017002258.2" /db_xref="GeneID:108060861" /translation="MSTLGGSRGERNAKPKFTALDINRMYKNSRGESSEPSAQKNQVP RKHGMQILGKVPSARRPPANLPSLKAETHTSSNNNLLVSVEGATSGGAGAGGAAGQGA AGTNTSHNNTTAHSGSSGAGGGAGGGGAGAASSSAGGHHSQQQAHSQHNNNIAGKFIN SNSNNSSSSGGSGSSNNNKNYKLINNSVGSSSGGGGAGGSSGGSSGLGGSGGGSGSAT GGHSINSPKTWSAITTGHERGSGGGQHFGRQQQQQQVVPHYQSPQFQYEFPTLDGTVG SGAGGGGSGTGLGSGGGAGKGHYQSQTNHHQHQQQQQHHQQHQQHHQQHHRDYHHGHG RQYGHHSHRDYRDGSDDVGGGGSAELGELSLRPQNDTAAWLHQQEKAAKVAAAAAAAD QGINLQGPGHHQMGGGGNGGGAGGGGGGSGGAVPLPILSLMPSFMRSGAPLPSGASGA TAASILAGGSLDSSTLPSAPYQNGILGARSASPAVVGSGFRTATVLPKRPAASSSPPQ SGLGLGGSPTPSQSQQQQQQQANGGGGGRKDKDYVVEPEVAQMQRPIIREEDLERLNA IAKDDSWTKQDDIDYTKKLTFSDDESTPEEHQQGQAKQQQGSNDQRKLSSSWQRGKES TEQPAEVNQQEQQQQNQEIRQQNGHRGSSGNVGAPVAGGIALDASVYERVKQRKEEEE RREMERKQAAAKKLQELEMKMNSKKAAAAALAGEGSASASLASNEVPPPPSSAPLGNV SEDEGGGLHRRPRGSISSLSSNVAPAGGAVSSSSSAGGDYGQKTFLTHFQSNLPPRFQ RQQQQQQQQLPRLEKSASASSAFDSNSRYLQKGGVSGGSGASGGGGAQANAGRSISGG YGTQRGASVGGSGGYGRNRHDSSSAREEQQELEQQQQQQRFTRGQQDYRQAQALPRSI SENSHRKTSVSSAGDDVLGGSGSCSSWAEQTDAEQKVHHRHREESFSSSHSHDSAVQI KILQRPTRQPSLSEESSMPQKQLPASPQQQKTAAEPPMPTQILRRSVEIEKSVEERQT DDKSGLESSEDKSKAAGKLEEDKSGNKRPSPRSGAACGGRGGGRSYSGGSAVGSGSSY RGQRSSSDWGSNRGSGGGGRRYYGSGGEQSEHSEDVDEDCYSSGGGGGGAAGAARRSP KETAANSGGQAAVNKAGFSPRGEPSRRGRGGLSSGGGGGAGGSSSNYRRQPVGTGGSG SGSGRSYGRLGYEEYGKQRTSESEADLDKTKQNQLALSAGLHKPSGSSKDDNNKDSQP ALSGEETKDKTAPLAPAADELQKEAAGRLPPGLSPVGSTSPGSAAEKKKAGEGSSCAA VGGEKKLPAIGEKTSLGAVGSGPSTNLLLDAGAPVNTIIFENSTYKQQAAAAAVVPKP SATLTTVDSLSSALSQMSFGGKATATGAGEDPQEMKLGFTFGDDPTAPLKVVDSIEKT ASQQQQQQQQHSQQQQQQQNNSTADLNMKIASVKKVWESATPMSEQQQQQQQQSQVQQ PQQQQQQQQQQQQQQQQQVVGQQQQAGDDGSGHMSAASFVAAVAASQHQQQHQQMPHY AVSAVHMQQSHHHQQQQQQQAAAAVAAAQAQHHQQQQAQHHQQHHALSSPGPVPGNHG HGYGHGSPFDAGSLEQQFQQEDYPSPQQQQQQQQAHQKTKQLQQQQHLGMSPPPSQQQ QQQQQHSQQQQQAHQQQQPHQQPSFYQASPQFGVGGIPTIPSPPAVVFNSSQMPPPPS QGGNLYAPFHSLDHSSRSPAYSAAAAAAHSFPNHYAAAAAAAAAAAAGGGPFNVNVNA YATPTPDMYSNLSSQFRLGGGPGPGPGPFGQPSSQQLSQASNHAAVAIISSSSNSMMS SGAAKPPPSQQQIGAIGSKSAGSGGGGPGGPGGPGPGPYATTQQYMNLYAGPPPPQHP GQGGPPPGAHQLQSNSYYSNSAPGGPSGPQFYGGPPPPPQGNGGAQSYGLYGGHQGGP PGSNGPPGPPQSQHTMGTFNTQFMNSQLLTAASINQYRGGPTPGAAYLKGSQAQAHMQ DSMGRQLKSPLSADMSLGLAKQVQSQPSPPHHKNYGAWDLQNQVLQQQQQSQQQQQQQ QQRQGGGGGNGPNMNALGGRGSGAVGSVGSGNGGGGGGSQVGGNGGGNGVGSVGQSGG GGQGRYPTPIQRPNNYPQHPQQQQQQQQQQQQQQQREQAAAVAAAAQRAQNMRQVTGG GGGVAGSAGGGGSNTPVGPPGGNNGGNPGPGGAGGGGGAGGAAGSGPGKPYYANNASG AGGAGNRGEWHAN" misc_feature 437..>691 /gene="nocte" /note="BAT2 N-terminus; Region: BAT2_N; pfam07001" /db_xref="CDD:462063" polyA_site 9019 /gene="nocte" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 agtgcgaagt ggaagaggaa gaacacgacg aagaagaagc agcggcaaac tttacgttgg 61 acggtggaaa gcagaatcaa aagttggcaa tttatgcgaa ataaaacgtt caaccgcagt 121 cgaatatcca ttagacaggc ggccgagtgt gccagcaaac cgcgaaacat tcgaagtaaa 181 caaatttgag cgttttccat tcagtttatc atcgctgcct aacaaacgaa acgaaactcc 241 ccgagtgtgt cgctgtgtgc gtgtgtggtg tttaaacgcc caccagaaaa actgaaacaa 301 ggcgatccca gcttgtaatc ctcgttctca ccccgagcaa cagccacatc ctagcccatc 361 ctccagcgca gcgggaagaa gaggagcgcg gcggcggcgt gaaggaagct aacgctaatg 421 aggatctatt ggcagcatga gtacactggg gggaagtagg ggagagcgaa atgccaagcc 481 caaattcaca gcgttggata taaatcgcat gtacaagaat agccgcggcg agtcgagtga 541 accatctgca caaaagaatc aagtgccacg taaacatgga atgcaaatct tgggcaaagt 601 gccgtccgct aggcgaccac cagccaatct gccatccctg aaggccgaga cccataccag 661 cagcaacaac aatctcctag tctcagtcga aggagccaca tctggaggag cgggcgcagg 721 cggagcagcg ggacaaggag cggcgggaac caacactagc cacaacaaca ccactgccca 781 cagcggaagt tcgggagcgg gaggcggagc gggaggagga ggagcaggag ctgcctcgtc 841 atctgctgga ggccatcata gccagcagca ggctcacagc cagcacaaca acaacattgc 901 cggaaagttc atcaacagca acagcaacaa cagcagcagc agcggcggca gcggcagcag 961 caacaataat aaaaactata aattaatcaa caactccgtg ggcagctcct ccggcggagg 1021 aggagcaggt ggatccagcg gcggttcgtc aggattagga ggatcaggag gcggatcagg 1081 ttccgcaaca ggcggacact cgatcaactc gcccaagaca tggtctgcca tcaccacagg 1141 acacgaacgc ggctcaggcg gcggtcagca ctttggccgc cagcagcagc agcagcaggt 1201 tgtgccccac taccagagtc cgcagttcca gtacgagttt cccacgctgg acggcacagt 1261 tggcagcggc gcaggcggcg gtggatcggg aactggtctg ggaagcggcg gtggagcggg 1321 caagggccat tatcagagcc agaccaatca ccaccagcat cagcagcagc agcagcatca 1381 ccagcagcat caacagcacc accagcagca ccatcgcgac taccaccatg gccacggaag 1441 gcagtatgga caccactcgc atcgcgacta cagagatggc agcgacgacg tcggcggcgg 1501 tggctccgca gagcttggcg agctcagcct tcgtccgcag aacgacacgg ccgcctggct 1561 gcatcagcag gagaaggcgg ccaaggtggc ggcggcggcg gcggcagcgg accagggaat 1621 caacctacag ggcccgggcc accatcagat gggcggagga ggaaatggag gcggcgccgg 1681 aggtggaggt ggaggttcgg gcggagctgt gcccctgccc attctctcac tgatgccctc 1741 gttcatgcgc agcggtgctc cgttgccctc cggagcctct ggagcgacgg ctgcgagcat 1801 tctggccggc ggttccctgg attcgtcgac tctacccagc gctccctatc agaatggcat 1861 cctgggagct cgttccgcct cgccagcggt ggtgggcagc ggctttcgca cggccactgt 1921 ccttcccaaa cgaccagcgg cctcctcgtc gccaccgcaa tccggactgg gcctgggagg 1981 atcgcccact ccgtcgcaat cccagcagca gcagcagcag caggccaacg gcggcggagg 2041 cggtcgcaag gataaggact atgtggtgga gccggaggtg gcccaaatgc agcgtcccat 2101 catccgcgag gaggatttag agcgcctgaa cgccatcgcc aaggacgata gctggaccaa 2161 gcaggacgac attgactata cgaagaagct aacattctcg gacgacgagt ccacgccgga 2221 ggagcaccag caggggcagg ccaagcagca gcagggatcg aacgatcagc gcaagctgtc 2281 cagcagttgg cagcgcggca aggagagcac tgagcagcca gcggaagtta atcagcagga 2341 gcagcagcag cagaatcaag agattcgcca gcagaacggt catcgtggca gctctggcaa 2401 tgtgggagcg ccggtggccg gcggaattgc cctggatgcc agcgtttatg agcgcgtgaa 2461 gcagcgcaag gaggaggagg agcgtcgcga gatggaacgc aagcaggcgg cggccaagaa 2521 gctgcaggaa ctcgagatga agatgaacag caagaaggcg gcggcagctg ctttggcggg 2581 cgaaggatcg gcatctgcat cgctggcatc caatgaagta ccaccacccc cttcctccgc 2641 accactgggc aatgtgagcg aagatgaggg cggcggactg caccgcagac caaggggaag 2701 catctccagt ctaagcagca acgtggctcc agcgggagga gctgtatctt catcctcatc 2761 cgcaggcggc gactacggtc agaagacctt cctcacccat ttccaatcga atctgccgcc 2821 ccgcttccag cgacagcagc agcagcaaca gcagcagctg ccgcgtttgg agaagagcgc 2881 ttcggcgagc agcgccttcg atagcaactc gcgttacctg caaaagggtg gggtgagcgg 2941 aggatccggc gccagtggag gaggaggagc ccaggcgaac gcaggtcgca gcatttccgg 3001 cggctatgga acgcaaagag gtgccagcgt gggaggaagt ggaggatatg gacgcaaccg 3061 gcacgacagc agcagtgctc gcgaggagca gcaggaactg gagcagcagc agcagcagca 3121 gcgcttcacc cgcggacagc aggactaccg acaggcgcag gcgctgccgc gcagcatatc 3181 ggagaattcg caccgcaaga cgagcgtctc gtcggctgga gatgatgtgc tgggcggcag 3241 tggctcctgc tcctcgtggg ccgagcaaac ggatgccgag cagaaggtgc accaccggca 3301 ccgcgaggag agcttctcct cgagccacag ccacgactcg gcggtgcaga taaagatcct 3361 ccagcggccg acgcgccagc ccagtctcag cgaggagtcc tcgatgccgc agaagcagct 3421 gcccgcctcg ccgcagcagc aaaagacggc ggcagagccc cccatgccca cgcagattct 3481 gcgacgcagc gtggagattg aaaagtcggt tgaggaaagg caaacggatg ataagtcggg 3541 cttagaatca tcagaggata aatcaaaggc agctggtaag ctagaggagg acaagtccgg 3601 taataagcga ccgagtccca ggagcggagc agcctgcggt ggacggggag gaggtcgcag 3661 ctacagtgga ggatcggctg taggatcggg aagtagttac cgaggacagc gaagctccag 3721 cgactgggga agcaatcgtg gaagcggcgg cggaggaaga cgctactacg gcagcggtgg 3781 agagcaatca gagcactctg aagacgtcga tgaggattgc tacagcagtg gaggcggcgg 3841 aggaggagca gcaggagcag cgcgtcgcag tcccaaggaa actgcagcca attccggtgg 3901 tcaagctgcg gtaaacaagg cgggcttctc gccacgcggc gaaccttcgc gacgaggacg 3961 cggtggcctc tccagcggag gaggaggtgg cgcaggagga tcctcttcca actatcgtcg 4021 ccaacccgtg ggcaccggtg gctccggctc cggatcaggt cgcagttatg gtcgcctcgg 4081 ctacgaggag tacggcaagc agcgcacctc cgaatcggag gcggacctgg acaagaccaa 4141 gcagaaccag ctggcactca gcgctggact gcacaaaccc agcggcagca gcaaggatga 4201 caacaacaag gattctcagc cggcgctgag cggcgaggag acgaaggaca agactgcccc 4261 gctggcaccg gcagcagatg agttgcagaa ggaggcagcg ggtcgcctgc cacctggtct 4321 ctcgccagtg ggctccacat cgcctggatc ggcggcggag aagaagaagg cgggtgaagg 4381 atcctcttgt gccgctgtag gtggtgaaaa gaagctgccc gccatcgggg agaagacctc 4441 gctgggcgcc gtgggctctg gaccctccac caatctcctg ctagacgccg gtgcacccgt 4501 caacacgatc atcttcgaga actccacgta caagcagcag gcggcggccg ctgccgtggt 4561 tcccaagccc agcgccaccc tgaccaccgt ggacagcctg tcgagtgccc tctcccagat 4621 gagtttcggg ggcaaggcga cggcgacggg agcaggtgag gatccgcagg aaatgaaact 4681 gggcttcacc tttggcgatg atcccactgc tcctttgaaa gtggtggatt cgattgagaa 4741 gacggccagc caacagcagc aacagcagca gcaacactcg caacagcaac agcagcagca 4801 aaacaattcg acggcggatc tcaacatgaa gatagccagc gtgaagaagg tctgggagtc 4861 ggccacgccc atgtcggagc agcagcagca acagcagcag cagtcgcagg tgcagcagcc 4921 gcaacagcag cagcaacagc agcagcaaca acagcaacag caacaacagc aggttgtggg 4981 tcagcagcag caggcgggcg acgatggcag tggccacatg agtgccgcct cctttgtggc 5041 cgccgtggcc gcctcgcagc accagcagca gcaccagcag atgccccact acgcggtgtc 5101 ggcggtgcac atgcagcaga gccaccacca ccagcagcag cagcagcagc aggcggcggc 5161 agcggtggcg gcagcgcagg cgcagcacca ccagcagcag caggcgcagc atcaccagca 5221 gcaccacgca ctctcctcgc cgggaccggt gcccggtaat catggccatg gctacggaca 5281 tggatcgccg ttcgacgcgg gttcgttgga gcagcagttc cagcaggagg actaccccag 5341 tccccagcag cagcagcagc aacagcaggc gcatcagaaa acgaagcagc tgcagcaaca 5401 gcagcatttg ggcatgtctc cgccgcccag tcagcagcag cagcagcagc agcaacactc 5461 gcaacagcaa cagcaggcgc accagcaaca gcaaccccac caacagccct ctttctacca 5521 ggcctcacca cagttcggag tgggcggcat tcccacgatc cccagcccgc cggcggtggt 5581 gttcaactcg tcgcagatgc ccccgccgcc gtcgcagggc ggcaatctgt acgctccatt 5641 ccattcgctc gatcattcga gccgttcgcc cgcctactcg gcggcagcgg cggccgccca 5701 cagcttcccg aatcattatg cggcagcagc ggcggcggcg gcagcggcag ccgcgggcgg 5761 cggtcccttc aacgtgaacg taaatgccta cgccacgccc acaccggaca tgtactccaa 5821 tctctcctcg cagtttcgcc tgggcggcgg tccgggtccc ggtcccgggc ccttcgggca 5881 gcccagctcg cagcagttga gccaggcgag caaccacgcc gccgtggcca tcatctcgtc 5941 cagcagcaac tccatgatgt cctcgggagc ggccaagccg ccgcccagcc agcagcaaat 6001 cggggccata ggctccaagt cggcgggtag tggaggagga ggtccaggtg gaccaggagg 6061 acccggtccc ggtccctatg ccaccaccca gcagtacatg aatctttatg cgggcccacc 6121 gccgccacag catccggggc agggcggtcc gccgcccgga gcccatcagc tgcagtcgaa 6181 cagctactac tcgaattcgg cgcccggcgg accgagcgga ccgcagttct atggcggacc 6241 gccgccgccg ccgcagggaa atggcggggc gcagagctat ggcctgtatg gcggccatca 6301 gggcggaccg cccggatcaa atggaccgcc gggaccgccg cagtcgcagc acacaatggg 6361 cacctttaat acgcagttta tgaactcgca gctgctcacg gcagcgagca ttaatcagta 6421 ccgcggcgga ccgacgcccg gagcggccta tctgaagggc agccaggcgc aggcgcacat 6481 gcaggattcg atgggacgtc agctgaagag tcctttgagc gctgacatga gtctcggttt 6541 ggccaagcag gtgcagtcgc agcccagtcc cccgcaccac aagaactacg gagcgtggga 6601 cctgcagaac caggtgctgc agcagcagca gcaatctcag cagcaacagc agcagcagca 6661 acagcgacag ggcggcggcg gcggcaacgg gccgaacatg aacgccctgg gcggccgtgg 6721 cagcggtgct gtgggcagcg tgggcagcgg caacggcggc ggaggcggtg gctcccaggt 6781 gggcggcaat ggcggtggca acggcgtcgg cagcgtgggc caaagcggag gcggcggcca 6841 gggacgctat cccacgccca ttcagcgacc caacaattac ccgcagcatc cgcagcaaca 6901 gcagcagcaa caacagcaac agcagcagca acagcagagg gaacaggcgg cagcagtggc 6961 ggcggcagct cagcgggccc agaatatgcg ccaggtgacc ggaggcggcg ggggcgtggc 7021 cggaagtgcc ggcggcggtg gcagcaacac acctgttggt ccgcccggcg gcaataatgg 7081 aggaaatcca ggtccaggcg gagcgggcgg cggcggagga gcgggcggag cggcgggctc 7141 gggtccggga aagccctact atgcgaataa tgcctccgga gccggcggag cgggcaaccg 7201 gggtgagtgg catgcgaact gagcgccagg tggtcaccca gaagagcccc gcaaggaaaa 7261 cacagcgatg gaaaagaata gcggaggagg agaagcagca ggaggatcag caggagagga 7321 gtagcccatc caaaccgaga acataacacg taaaaatcag agaaagtcag aaagtcagca 7381 aggagttaaa ctagaaaagt ggaatataaa caagcaaagc agcctagaca aaacagcatc 7441 caatcttcaa gaggagatcg ggttaatgtg atgtgatgtg agtaggcaag tgagctattg 7501 ggggattccc cgtcacaacc gaaaaaaaat ggcataatgg caactcagct aaatcagcga 7561 aatcagaaga aagtaatcgc aaatcgaaaa gtgaaagtga ggagacgaaa ggttcaacag 7621 gaaacgagta aggaatacct aaattgcaag aagaaatatt taaaaaagaa acacaccaca 7681 ccacaccaca taccaccaca cacacacaca catgcataca tttacatata catacataca 7741 tacaaaatag cagagtgtat tttttgtcaa acaaatttac ataataatat attactttta 7801 tatacttatg attttttgta gtagattctt ttctccttta aacaaaacaa aaacaagaaa 7861 aaaaacaaaa caaaacaaac aaaaaacaaa atgaaccttt ggcactgcgt atgctttaat 7921 ttctttatat atacatattg tttaattttt ttgcaaccaa caaaaaatca actaataatt 7981 ctaatttatg attatgctac aatatacatt atatatacca tctatctatc tatatctatc 8041 gatatgaatc tttctgtgta gacagcgaat aagagagaga cagacagaca gagagagaga 8101 gagagagaga gagagagaca gacatagacg gacagagaga gagagctatg aacgagggag 8161 acaaaaagaa gagtttgttt aagcgcaaat ttaagttcaa acgtaaaaca aatacattta 8221 gaaatcttgt cgtcttttaa acatccacca agacatatag acacttgcgt cacaaattgt 8281 actcggcggg ctctatattg ttatatataa tatagtcaac taaaccctga tcctaactaa 8341 actaaactaa aaaacacagg gagaaacgaa aacggaccca aactaaaatt tgaaaatagt 8401 gttcagcgca atcgcacacg ggtggcaacg ccgccgaaaa cgccagagct gccacctcgg 8461 ccgctgccgg cgataattag ttaatcgatt atcattaacc cgccagtcct gctgcaattt 8521 gaaaaaaggg aaaacacgag aaaggacgtt catgctcaag gtagaaggca aacggtgggg 8581 aggtgaggtg aggaggcaaa atgaaattta aacaatttat ataaatgtgt aattcattat 8641 gtaactgtaa cctaacatgg atatgatatg tatggcatat actacacgaa aacaaaacaa 8701 cacacagaca ccacacaagc aaacataata tatatataca tatatataga ggcaaaatcc 8761 aagcgaaaaa caaaaacact ccagcaaaca tttttaagga aaaaaagcaa gaaccgacac 8821 atatatccca gtaacagtaa ttaatacgat tatactcgga tcgaagtccc gcagagtcgg 8881 gcagggatct cttaacccca taaagccaac cggggcgacg aaatccctgc cctgtcccgc 8941 aggactatgc gactaaatgt agtagaatta ataattaaac aatgcaaaat aagaaaagca 9001 aaagcaaggc acttttcgc