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LOCUS XM_017145994 3507 bp mRNA linear INV 09-DEC-2024 (brk), mRNA. ACCESSION XM_017145994 VERSION XM_017145994.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017145994.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3507 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3507 /gene="brk" /note="transcriptional repressor brinker; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108060330" CDS 546..2504 /gene="brk" /codon_start=1 /product="AF4/FMR2 family member lilli" /protein_id="XP_017001483.2" /db_xref="GeneID:108060330" /translation="MDSSEQLNGAAGALNFKRPKDSAENAASNSTSNSSGSPKMGSRR IFTPHFKLQVLESYRNDNDCKGNQRATARKYNIHRRQIQKWLQCESNLRSSVANNQQQ QQQQQQQQQQQQQQQQQLLPQQSASPTPAAVKVFHQLSHPLVHQLHHHHAVGHHHHHH HHAAHHHHAAAAAAAAAAAAAAAAAHHHAAHHLLAANGMVPHPLAAHPHLHVPVAMHP QQQQQQQHLQQQEQQQQQSEATSNGSNLSAAKIAAVVAAATAAAAIPASSSSSNGSSC NGSSNSNSNCNSNNSNQVPIQVPILSGSPPAGGSTTSTTTTSASSSSSSSASHIPHMP YAAYHHHHHQHPHFLEAVATPAPMDLSLGSSARRQMQLNEKVADPSGVDLTFRKRKVI TSPMQPDKMSKLEMQEEEEQIKKEPETENEDVEVDVETEQPEEHKVPSKQVKLFKPYL LDDDEENQQEEQEDLDEGAGGEEDSSEHADKDDSDEDDDELDNKKKQLRRHKKKIGEQ REPIIWSNHPYPGGCLSPGSSSFQCPTGIQQTFPVIAGGSPNQAATPLSPFSAPALSP TGFCCPKGSPVSGYESSSSTYSDSGSSYSLNLQLHAVYNDNLMYMQQQQQQQQQHHLQ HQQHLQRWLDQESRILADSAPTNLTLVA" misc_feature 666..839 /gene="brk" /note="Brinker DNA-binding domain; Region: BrkDBD; pfam09607" /db_xref="CDD:462838" ORIGIN 1 cttcgaacta gaacgccgag ggcagaacaa ttgtgttttg gattccttgc cgtgcggatc 61 gcaagcgcga gagttatgag aagagcgtag caaagcgtac gaagtagtag aagcaacaga 121 attcgaattc agaatcgaca gaaaacagag gcaaagagga gtagaagaaa gaaaagaacg 181 ttattttttt aacagtgttt ttctgcgcca cactctcgaa atacatattt caaacggatt 241 ttcaaagtgc ttttcccatt ttttacaata tataaaactc caaaagtatc tgtgtgtgtt 301 tgtgcgcgcg agtgcccgtg tgtgtgtgtg tgcgcagtcg acgtcgctgc tttggggaca 361 gagctgccag atcgcgagtt atgaaagcgc aagcgtcgca cgcaagtagc aacaacaaaa 421 gctactgaaa aaaactctac aaaaaacacc gcaccacaca ctctattttt tatttgttgc 481 caaaaaaaag gaagcaaatt ctatacacac tttataagaa aagagatctt gaaaaaaaga 541 cgatcatgga tagcagcgaa cagttgaacg gagccgcggg agctttgaat ttcaagcggc 601 ccaaggattc tgcggagaat gcggcgagca attctacaag caactcttcg ggcagcccca 661 aaatgggcag tcgccggatc ttcacgcccc atttcaagct gcaggttctg gaatcgtatc 721 gcaacgacaa cgattgcaag ggcaaccaga gggcgacggc caggaagtac aacattcacc 781 gccggcaaat ccagaagtgg ctgcaatgcg agtccaatct ccgctcctcg gtggccaaca 841 atcagcagca gcagcagcaa cagcagcagc agcagcagca acagcagcaa cagcagcagc 901 aacttctccc ccagcaatct gcatcgccca ctccggcggc ggtcaaggtg ttccatcagc 961 tgagccatcc gctggtgcat cagttgcatc atcatcatgc ggtgggtcat caccaccatc 1021 accaccacca tgccgcccat caccatcatg cggcggcagc ggcggcggca gcagcggcgg 1081 cagcagcagc agcagcggcc caccatcatg ccgcccatca tctgttggcg gcgaacggca 1141 tggtgccgca tcccctggcc gcccatcccc atctgcatgt cccggtggca atgcatccgc 1201 agcagcaaca gcagcagcag cacttgcaac agcaggagca acagcagcaa caatcggagg 1261 ccacttcgaa tggcagcaat ctttcggccg ccaaaatagc cgctgtggtt gccgccgcaa 1321 cagcagcagc agcaatcccc gccagcagca gcagcagcaa cggcagcagt tgcaacggca 1381 gcagcaacag caacagcaat tgcaacagca acaacagcaa ccaagtgcca attcaagtgc 1441 caatcctgag cggatccccg cctgcaggtg gatccaccac tagcaccacc accacctctg 1501 cctcctcctc ctcctcctcc tcagccagtc acattccaca catgccctat gccgcctatc 1561 atcatcacca ccaccaacat ccccactttc tggaggcggt ggccacgccc gcgcccatgg 1621 acctctccct cggctcctcc gcccgccgtc aaatgcagct gaacgagaag gttgccgatc 1681 cctccggcgt ggatctcacc ttccgcaagc gcaaggtcat cactagtccc atgcaacccg 1741 acaagatgag caagctggag atgcaggagg aggaggagca gatcaagaag gagccggaaa 1801 ccgagaacga ggatgtagag gtggatgtgg agacggagca gccggaggag cataaggtgc 1861 cctccaagca ggtcaagcta ttcaagccct atttgctgga cgacgacgag gagaaccagc 1921 aggaggagca ggaggatttg gatgagggcg ctggcggcga ggaggattca tcagagcatg 1981 ccgacaagga cgactccgat gaggatgatg atgagctgga caacaagaag aagcagctgc 2041 gacgccacaa gaagaagatc ggcgagcagc gggagccgat catctggagc aatcatccgt 2101 atcccggtgg ctgtctatcg cccggaagca gcagctttca atgccccacc gggattcagc 2161 agacatttcc cgtcattgcc ggggggagtc ctaatcaggc agccacgccc cttagcccct 2221 tctcggcgcc cgccctctcg cccaccggct tctgctgccc caaaggatcg cccgtttccg 2281 gctacgagag cagctcctcc acctacagcg acagcggcag cagctacagc ctcaatctcc 2341 agctgcatgc cgtctacaac gacaatctga tgtacatgca acagcagcag caacagcagc 2401 agcaacatca cctgcaacat cagcaacacc tgcagcgctg gctggatcag gagtccagga 2461 tcctggcgga ttcggcgccc acaaacctga ccctggtggc ctaagaacac acaacataca 2521 agtagcaact aaggaagcag caatcccacc aatcggatgt tttaacggca gtcactgggc 2581 ctggcctttt agttccctaa gccatattta agcctatgaa tgagagtttt tttttcctag 2641 ccttaaaact taccttacaa atccttagat ctaagcgaaa aaaaacatat atcttccaag 2701 catatcagca aaaaaagccc ccacacaaaa ccctaggttt agataacatt tctttttttt 2761 tttttggtta gctattaaga acaaattaag cttaagttta ggtttttctt tttttttatg 2821 tgtaaataat tgtgtacaaa agaaaagcaa aaacaaggcg aaacatttga atttgcttaa 2881 gaatttcaac gctaaattta ttttgtaaga gagcgagaga gagagagaaa aatgtgaaaa 2941 aatgcaactt gaaaaactga gaaaattgtt aagagtaaag ctttaaaaac aaaacacaca 3001 cctttacaaa tacacacaca cacaccgttt ttatttggaa attgaaaatt gaaaattctt 3061 gtgatatgaa caaaacaaat aagaaaacaa aattttttaa taaattgttg aaaactgaag 3121 cttaatgaat atatatatat ttacaaaaca caaaggagag caagaaatta aatgtacatc 3181 taagggttaa atctaaaagt taattataat tatatacaat atacatatat acaatatatt 3241 tatatacaaa caagagaata acgttttttt ttgtgcattg ccaagggaaa tctttaatga 3301 acctatttaa aataaaagcg catatacata gagagatatt tacctaaaaa catatatata 3361 tatataaaaa tcagtatttt tatatataac atttgacaac aacaacaata attgtgtgac 3421 cataaacaac aacaagagaa agcaacaaga aaacgaattg attaaattaa caacagaaaa 3481 ctaaaaaaac tttaaattga actggtt