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LOCUS XM_017145988 4109 bp mRNA linear INV 09-DEC-2024 (Prp5), mRNA. ACCESSION XM_017145988 VERSION XM_017145988.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017145988.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4109 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4109 /gene="Prp5" /note="pre-mRNA processing factor 5; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108060325" CDS 210..3917 /gene="Prp5" /codon_start=1 /product="probable ATP-dependent RNA helicase DDX46" /protein_id="XP_017001477.2" /db_xref="GeneID:108060325" /translation="MSKSSGRDRERERERERERDRDRDRERDRDRERERDNRHDSRSR DYDMGKSRNGGGGGGGGGGSRSARDDRKRGKDMASDRGRRDDKRRKRSRSKDYDKDNS PYYRRADKERDRDRDRDRQREKDREREKEKERERDKDRERDRQRERESDGRRAAAAAP LVIPVPSTSSSDEEVEEIDKEEQQRRLEQEMIKRRERIERWRAERKRDTKTAAVVAPA VVKSAKKWSLEDESEEDDSNPAPPLEVGKKEADEPDSPPSKFHSIRKRFDDDLVESKF SPVKRPTFSKSFGAKLGIGLAPKSEAEIKKEPPPPVEPKKEIKKEPSPIKMEIVEEQP TAVVVVAAAPKEEEKQEVKVEAPAPEEKPQQPEAEPEDDIDPLDAYMQEVNNEMRRVN NFVNPPTKAQGVVILTGVAKKKTTTLKKGELIEQNMDSLEYSSEDELEDIRDTAVNLA MKHRKELAKIDHSSVTYAPFRKNFYVEVPELTRMTPGDVEKYRAELEGVQVKGKGCPK PIKTWAQCGVSKKEMDVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFI LPMFRHILDQPSLEDGDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGI SEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQV MRIIDNVRPDRQTVMFSATFPRQMEALARRILKKPIEVIVGGRSVVCKDVEQNVVILN DDAKFFKLLELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRD STIIDFKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKG SAYTFITPEQSRYAGDIIRALDLSGTLIPGELQTLWTEYKAAQEAEGKTVHTGGGFSG KGFKFDEQEFNAVKESKKLQKAALGLADSDDEEDIEQDIDQQIEQIFAAKRTVKDTSA AATAAAASAAAAAAAAAAAVSGGNPALASAAAQAAAAAAAANLAIAAASASGVGGVNV QNAAAAGGGVGGALSSDKLELAKRLASKINSSKNLDTKGSGVVVVEPMLKGPPGITAA GAAPLLTARTVAEQMAAKLNNKLNYQPKEDEEGLGPLMGGTTNSFTKYEEELEINDFP QQARWKVTSKEALAQISEYSEAGLTVRGTYVPQGKNPPDGERKLYLAIESCSELAVQK AKREITRLIKEELLKLSSAHHVFNKGRYKVV" misc_feature 1572..2909 /gene="Prp5" /note="N-terminal helicase domain of the DEAD-box helicase superfamily; Region: DEAD-like_helicase_N; cl28899" /db_xref="CDD:475120" misc_feature order(1746..1748,1800..1802,1806..1814,1821..1823, 1875..1895,2211..2216) /gene="Prp5" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350711" misc_feature 3603..3911 /gene="Prp5" /note="type I K homology (KH) RNA-binding domain found in DEAD box protein 46 (DDX46) and similar proteins; Region: KH-I_DDX46; cd22473" /db_xref="CDD:411901" polyA_site 4109 /gene="Prp5" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tacacaggta aatcgatgac cagaaagatt gtattttgtg aaatttcgca aggaaaattc 61 gttaaatctc aataaaaagc gattgcattg tgctgtgcgg cgcgtgcggt gagccaaagg 121 cagtggaaac tgcacatttc caccaccgcc cgtgagttgg aggcgtggca gtgctagacc 181 ggcgaacaga aagccccaaa aaaaccgcca tgtcaaaaag ttccgggcgc gaccgggaga 241 gggagaggga aagggagcgg gagagggacc gggatcgaga tcgggagcgg gacagagatc 301 gggagcggga gcgggacaac cggcacgata gtcgcagtcg cgactatgac atgggcaagt 361 ccaggaatgg cggcggcggc ggaggaggag gcggtggctc ccggagtgcc cgggatgacc 421 ggaagcgcgg caaggacatg gccagcgatc gcggaagacg cgatgacaag cggcggaagc 481 gttccaggtc caaggactac gacaaggaca attcccccta ctacagacgc gcggacaagg 541 agcgcgaccg tgaccgggat cgcgatcgcc agcgggagaa ggacagggag cgcgaaaagg 601 agaaggagcg cgaacgggac aaggatcgcg aacgcgatcg ccagcgggaa agggaatcgg 661 acggcagaag ggccgcggca gccgctcctt tggtcattcc cgtgccctcg accagctcct 721 ccgacgagga ggtggaggag atcgacaagg aggagcagca gcgtcgcctc gagcaggaga 781 tgatcaagcg gcgcgagcgc atcgagcgtt ggcgggcgga acgcaagcgg gataccaaaa 841 cggcggccgt tgtggcgccg gctgtggtca agtccgccaa gaaatggagc ctggaggatg 901 agtccgagga ggatgacagc aatccggcgc cgccgctcga agtgggcaag aaggaggccg 961 acgagcccga ttcgccgccc tccaagttcc acagcatacg caagcgcttc gacgacgacc 1021 tggtcgagtc gaagttctcg ccggtgaagc gacccacctt tagcaagtct ttcggcgcca 1081 agctgggcat tggcctggcg cccaaaagcg aggcggagat caagaaggag ccaccgccgc 1141 cggtggagcc caagaaggag atcaaaaagg agccatcacc catcaaaatg gagattgtcg 1201 aggagcagcc caccgccgtc gtcgttgtcg cagcagcccc caaagaggag gagaagcagg 1261 aggtcaaagt agaagcacca gcacctgaag agaaaccgca gcaaccagag gcagagcccg 1321 aagacgacat cgatccactg gatgcctaca tgcaggaggt caacaatgaa atgcgacgcg 1381 tgaacaactt cgtcaatccg cccaccaaag cccagggcgt cgtgatcctt acgggggtgg 1441 ccaaaaagaa gacgacgacg ctgaagaagg gcgagctgat cgaacagaat atggacagtt 1501 tggagtactc gagcgaggac gagctggagg atatacgcga cacggccgtc aatctggcga 1561 tgaagcatcg caaggagctg gccaagattg atcattcctc ggtgacctat gctcccttcc 1621 gcaagaactt ctacgtggag gtgcccgagc tgacgcgcat gacgcccggc gatgtggaga 1681 agtatcgcgc cgaactggag ggcgttcagg tgaagggcaa gggctgtccg aagcccatca 1741 agacctgggc ccagtgcggc gtcagcaaga aggaaatgga cgtgctgcgg cggctgggct 1801 tcgagaagcc cacgcccatc cagtgccagg ccataccggc catcatgtcc ggacgggatc 1861 tgataggtat tgctaaaacc ggcagtggca agacgttggc attcatttta ccaatgttta 1921 ggcacatcct ggaccagccg agcctggagg atggcgacgg ggccatcgcc atcataatgg 1981 cgcccacgcg cgaactctgc atgcagatcg gcaaggacat acgcaagttt agcaaatccc 2041 taggactgcg gccagtttgc gtttacggcg gcactgggat ctccgagcag atagccgaac 2101 tgaagcgtgg agccgagatc attgtttgca caccgggtcg catgatcgat atgctggcgg 2161 cgaactcggg acgagtgacg aacctgcgac gcgtcaccta cgttgtgctg gacgaagccg 2221 atcgcatgtt cgacatgggc ttcgagccgc aagtgatgcg gatcatcgac aatgtgcgcc 2281 cggatcgaca aacggtcatg tttagcgcta cgtttccgcg acaaatggag gcactggcgc 2341 gacgcatcct gaagaagccc atcgaggtga tcgtcggcgg ccgttcggtg gtctgcaagg 2401 atgtcgaaca gaatgtcgtc attctcaacg acgatgccaa gttcttcaag ctgctggaac 2461 tgctgggcat ctaccaggag gccggcagca ttattgtgtt tgtcgacaag caggagaacg 2521 ccgacatcct gctgcgcgac ctcatgaagg cctcgtatcc ctgcatgagc ctgcacggcg 2581 gcatcgatca gttcgatcgc gactccacca tcatcgactt caagtcgggc aaggtgcggc 2641 tcctgatcgc cacctcggtg gcggcacgag gcctcgacgt taaggatctc atactggtgg 2701 tcaactacga tgtgcccaat cactacgagg actatgtgca cagatgcggt cgcaccggtc 2761 gagcgggcaa aaagggtagc gcctacacgt ttattacccc cgaacaatcg cgctatgctg 2821 gcgatattat acgcgccttg gacctctccg gcaccctgat tcccggcgag ctgcagacgc 2881 tgtggaccga atacaaggcc gcccaggagg ccgagggcaa gacggtgcac acgggcggcg 2941 gcttcagcgg caagggcttc aagttcgacg agcaggagtt caatgccgtc aaggagagca 3001 agaagctgca gaaggctgct ctgggactgg ccgattccga cgacgaggag gatatcgaac 3061 aggatatcga ccagcagatt gagcaaatct ttgcggccaa gcgtacggtt aaggatacct 3121 cggctgcggc cacggctgct gcggcttcgg ctgctgctgc ggctgctgct gctgccgccg 3181 ccgtttcggg cggaaatcca gcactcgcct cggcagcggc tcaagcggcg gcagctgctg 3241 cggctgccaa tttggccatt gcagcggcct ccgcttcagg ggtcggaggg gttaatgtac 3301 aaaacgctgc tgctgctggc ggaggagtag gaggagcact cagctccgat aaactggagc 3361 tggccaagcg gctggcctcg aagatcaaca gcagcaagaa cctggacacc aagggcagcg 3421 gcgtggtggt tgtggaaccg atgctcaagg gaccgccggg catcaccgcc gccggcgctg 3481 caccgctttt aaccgcgcga acggtggccg agcagatggc cgccaagctg aacaacaagc 3541 tcaactacca gcccaaggag gatgaggagg gcctgggacc gctgatgggc ggcacgacca 3601 attcgtttac caaatacgag gaggagctgg agatcaatga tttcccgcag caggcgcgct 3661 ggaaggtcac ctccaaggag gcgctcgccc agatctccga gtactcggag gcgggtctca 3721 ccgtgcgcgg cacgtatgtg ccgcagggca agaatccgcc ggatggcgaa aggaagctct 3781 acctggccat cgaaagctgc agcgagctgg ccgtccagaa ggccaagcgc gagatcacgc 3841 gactcatcaa ggaggagctg ctgaagctca gttccgctca tcacgtcttt aacaagggac 3901 gctacaaggt ggtctagacc cgggattcct ttgtaagccg cccgctatga taagataagt 3961 gaactgttcc ttgaggagtg aggaaattcc caagcggatt tatcccaata aatttattgg 4021 atacatgtac tgtgtttcat tctaattcat attttccaaa ataaaatatc agtattttgg 4081 ccgtaacaaa taatccaaat gcggattgt