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LOCUS XM_017145983 6089 bp mRNA linear INV 09-DEC-2024 chronophage (Cph), mRNA. ACCESSION XM_017145983 VERSION XM_017145983.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017145983.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6089 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6089 /gene="Cph" /note="BCL11 transcription factor chronophage; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:108060321" CDS 716..4351 /gene="Cph" /codon_start=1 /product="uncharacterized protein Cph" /protein_id="XP_017001472.2" /db_xref="GeneID:108060321" /translation="MYNKMLSISEDHGFRSLSHSDSTENDAVATQDILTCGACQKAFA LSDIVKFIQHKVLQCNKENYGQCAQNTQNPQMDRDAEEGRPLSLVNRRPSISAPISGR KSGTSGVAPSAAAAVAAAAAAAAAAAAAAAASSTASGSRIHTPPPSPADLLADGASST PKRLVDENDNTTPKDSETGATTLDSNAAPSSPAAIERQSSGDSSCELEEQAKVKQEPY EEEHHHHHHNDEVEEEDEEEEERSLAKRPKMELVDAEANTVHTEPSNYTCSTCKTRYT SAWRLIQHVQHSHGVKIYVESPGGLGLGGGGGGATLTVATPAALNSSALALAAAAAAA ASVSGSGLASPQPAAVSPTSNPLPSPAATSAGKRSSPVAASNNNSVSSSCSQSASNSL ANSSNISSNTSSNLGSPQQQQQQQQLQLQQQQQRVQQQQRENLASAMAAGMRHHPLLP PPEAMHANPFQLLRMPLPPGNVVPTVAPLFGRPSPADHYRMEQLVSEQFRHHGFNLAA AAAAAQAQFNANGVQSVVVEPRPPSSASSSGSQRGSVPPAALPPVSLSSQQQSLQQPQ QQPQQQTTPTQQSQQQQQQQQLPTGLVGGGAGGSSLKLEPQQMDFYSQRLRQLAGTTS PGAGSTVNSSSPSPRQKQSPHFASPSPSQQQQQQLQQQQQQQQPPQQRPHSLTPPEKL QGAETSSENGSGNLNLILSSTPRSASTPPSKTSDVASLMQDASPFACSYCDKKFRFEN NLIIHQRTHTGEKPYKCTACDFECSHIQKLMKHMRVHRSPGDDQDQQDGNQDDGSNAD SLETNEAEDNDEDPNPEESEEEMGDNDLDGEDEDEDELDDCEEMDYKAEDLSVSNRLD GKSQSPKTTSSGATSLVGELMDKFGLSNIAQYSEAYKQALQESGRKEAAAAAAAAAAA AAATDNNNRNPGDKMNGLPVAALRLRDEFAKNCQMFQQPQDASGAASQVPLFNPFPNP FELSKRMKMDGGDWWGMSQALHRNEALFENLKLKPLGLGGANSLIQGPLLKKESRQRN DTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRTGKDV YRCRFCDMPFSVPSTLEKHMRKCVVNQGKAAAAANAVAAAQAAQAAAQHIQAAAQQQQ QQQQQQQQQQQLSPMGVGGGVVGYPPQFVTGGHNLSLPGSVSGDNDSNASSSLTGVHP ISLKEEA" misc_feature 2894..2962 /gene="Cph" /note="Zinc finger, C2H2 type; Region: zf-C2H2; pfam00096" /db_xref="CDD:395048" misc_feature 2900..2962 /gene="Cph" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2936..3013 /gene="Cph" /note="Zinc-finger double domain; Region: zf-H2C2_2; pfam13465" /db_xref="CDD:463886" misc_feature 2984..3046 /gene="Cph" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 3809..3874 /gene="Cph" /note="Zinc finger, C2H2 type; Region: zf-C2H2; pfam00096" /db_xref="CDD:395048" misc_feature 3812..3874 /gene="Cph" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(3827..3829,3833..3835,3839..3841,3845..3850, 3857..3862,3869..3871,3911..3913,3917..3919,3929..3934, 3941..3946,3953..3955,4001..4003,4007..4009,4013..4015, 4019..4024,4031..4036) /gene="Cph" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 3848..3925 /gene="Cph" /note="Zinc-finger double domain; Region: zf-H2C2_2; pfam13465" /db_xref="CDD:463886" misc_feature 3896..3958 /gene="Cph" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 3986..4042 /gene="Cph" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" polyA_site 6089 /gene="Cph" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ccgtgtgtgt gtgtagtggt gactacacac gtttttttcc tatacggttg tttttttttt 61 ttttttttag ccccgaccct cgagggtcaa agggaaagaa gagcggtgag tgtgtgtgcg 121 agtgcgagta aaaaaacgct gcctctgccg acgtcgacgg cgaccgcaca gcctcaacgg 181 caggaccgtc gtcgaccgtc gaccctcgag cgtcccagga agccaactag ctgtcagtcc 241 acgtgaagcc tccgaggggt caacaacaca ctacacacga cctcatcgaa atcagactca 301 gattcaaact ccgattcaga tttagatcct tcggccaaac acgtcgattt actacataca 361 acacatatta cctcgcattc cccacacaat cactcgaaac ggtttaaccg atacgcaacc 421 gatacctaac cgttaccgct tcgtgtcttg tgctaaagtg ctaaaaccaa aacaaaaaaa 481 aaacaaacat tctgggacaa ccacacgcag gacaattgga ttacctacga tcgtgtgtgt 541 ctgtcactac aaacattttg tgcctttcgc tttatttttt ttttaccaca aaaactattt 601 tttttaaaaa ccaaaaacca caaaaacaaa aataataatt gtgatgtgtt aagagttcaa 661 aacataaaac caaaaaccaa atacacaaat tatttttttt aaaacaaaac tcaagatgta 721 caacaaaatg ctgtcgatca gtgaggatca tggattccgt tcgctgagcc attccgactc 781 cacagagaac gatgccgtgg ccacacagga catcctcacg tgcggcgcct gccagaaggc 841 gttcgccctc tcggacattg tcaagttcat ccagcacaag gtcctccagt gcaacaagga 901 gaactacggc cagtgcgccc agaacaccca gaatccgcag atggatcgcg acgccgagga 961 gggtcgtccg ctgagcctcg tcaatcgccg cccctcgatc tccgccccca tttccggtcg 1021 caagtccggc acatccggcg tcgccccatc cgccgcggca gcggtcgcag cagcagcggc 1081 agcggcggca gcagcggcgg cggcagcggc ggccagcagc acggccagcg gctccaggat 1141 acacacacca ccaccgagtc cggcggacct gctggccgac ggagccagca gcacgcccaa 1201 gcgtctagta gatgagaacg acaataccac gcccaaggac agcgagacgg gcgccaccac 1261 cctcgattcg aatgccgccc cctccagtcc ggcggccatt gagcgccagt cgtcgggcga 1321 cagcagctgc gagctggagg agcaggcgaa ggtcaagcag gagccctacg aggaggagca 1381 ccaccaccat catcacaacg atgaggtgga ggaggaggac gaggaggagg aggagcggtc 1441 actggccaag cggcccaaaa tggagctggt cgatgccgag gccaatacag tccacacaga 1501 acccagcaac tacacttgct ccacgtgcaa aacccgctac acctccgcct ggcgcctcat 1561 ccagcatgtc cagcactcgc atggcgtgaa gatctacgtg gagagtcccg gcggtttggg 1621 attgggagga ggtggaggtg gagccacctt gacggtggcc acacccgccg ccctcaacag 1681 cagcgctttg gccctggccg ccgccgccgc tgccgcagct tccgtttccg gttccggcct 1741 ggcgagtcca cagccagcag cggtcagccc gacctcgaat cccctgccca gtcccgcagc 1801 aacatcagcg ggcaagcgga gcagtccggt ggccgccagc aacaacaact cggttagctc 1861 tagttgctcc cagtccgctt ccaattcgct ggccaacagc agcaacatca gcagcaacac 1921 cagcagcaac ctaggctcac cgcaacagca gcagcagcag caacagttgc agctgcagca 1981 gcaacagcag cgcgtgcagc agcaacaaag ggagaacctg gcctccgcca tggccgccgg 2041 catgcgtcac catccgctgc tgccgccgcc ggaggcgatg cacgccaatc ccttccagct 2101 gctccgcatg ccgctgcccc ctggcaatgt agttcctacg gtggcgccgc tcttcggccg 2161 cccctcgccc gccgaccact accgcatgga gcagctggtc agcgagcagt tccgtcacca 2221 tggcttcaat ctggccgccg ccgccgccgc tgcccaggcg cagttcaatg cgaacggcgt 2281 gcagtcggtg gtggtggagc cgaggccacc ctcctcggcc agcagcagtg gcagtcagcg 2341 gggctccgtg ccgccggctg cactgcctcc ggtttccctg agctcccagc agcaatccct 2401 gcagcaaccg caacagcagc cgcaacagca gactacgccc actcagcaat cccagcagca 2461 gcagcagcag caacagctgc ccactggctt agtaggcgga ggagcaggtg gctcctcttt 2521 gaagctggaa ccgcagcaga tggattttta ctcgcagcga ttgcgtcagc ttgcgggcac 2581 aacaagccct ggagctggca gcactgttaa ctcgagctcg ccgagtcctc gacagaagca 2641 atcgccgcat ttcgcgagcc cctcgccctc gcagcagcag cagcagcagt tgcaacaaca 2701 gcagcagcaa cagcagccgc cgcaacagcg accccattcc ctgacgccgc cggagaaact 2761 gcagggtgcc gagaccagtt cagagaatgg cagcggaaac cttaacctaa tcctctccag 2821 cactccgcgt tccgccagca cgccgccgtc gaaaaccagc gatgttgcgt cgctgatgca 2881 ggatgccagt ccctttgcct gcagctactg cgacaagaag ttccgcttcg agaacaacct 2941 gattatccac cagaggacgc acaccggcga gaagccgtac aagtgcaccg cctgcgactt 3001 tgagtgctcg cacatccaga agctgatgaa gcacatgcga gtgcatcgca gtccgggcga 3061 tgaccaggat cagcaggatg gcaaccagga tgatggcagt aatgcggatt ctttggaaac 3121 caatgaggcc gaggacaacg acgaggatcc caatcccgag gagtccgagg aggagatggg 3181 cgacaacgat ctggatggcg aggatgagga cgaggacgag ctggatgact gcgaggagat 3241 ggactacaag gcggaggatt tgagtgtgag caatcgtctg gatggcaaga gccagagtcc 3301 caagaccacg agctccggag ccacctccct cgtgggcgag ctgatggaca agttcggcct 3361 ctcgaacatt gcccagtaca gtgaggccta caagcaggcg ctgcaggagt cgggacgcaa 3421 ggaggcagcc gctgccgccg ccgcagccgc cgctgccgct gctgcaacgg ataataataa 3481 tcgcaatccg ggggataaga tgaatggcct gccggtggcc gctttgcggc tgcgcgatga 3541 gttcgccaag aactgccaga tgttccagca gccgcaggat gccagcggtg ccgcctcgca 3601 ggtgccgctc ttcaatccct tccccaatcc cttcgagctg agcaagcgga tgaagatgga 3661 cggcggcgac tggtggggca tgtcgcaggc tttgcatcgt aatgaagctc tctttgagaa 3721 cctcaaactg aaacccttgg gattaggagg agccaactcc ttgattcaag gacccctgct 3781 caagaaggag agccgccagc ggaacgacac ctgcgagttc tgcggcaagg tgttcaagaa 3841 ctgctccaac ctcaccgttc accggcgctc gcacaccggc gagaagccgt acaagtgcga 3901 gctctgctcc tacgcctgcg cccagagctc caagctgacg cggcacatga agacgcacgg 3961 caggacgggc aaggatgtgt accgctgccg cttctgcgac atgcccttca gtgtgccctc 4021 gacgctggag aagcacatgc gcaagtgtgt ggtgaatcag ggcaaggcag cagcggccgc 4081 aaatgcagtg gctgccgccc aggcggccca ggctgcggcc cagcatatcc aggcagccgc 4141 ccagcagcag cagcagcagc agcaacaaca gcagcagcag cagcaactgt cgcccatggg 4201 cgtcggcgga ggggtggtgg gatatccgcc gcagttcgtg accggcggac acaacctatc 4261 cctgcccggc agcgtgagcg gggacaacga cagcaacgcc tcctccagcc tcacgggcgt 4321 ccatcccatt tcgctgaagg aggaggcatg acttttcagt ggcttcccca tgccgccgcc 4381 actgcagccg caacagcagc cgcaacagcc gctgcagcag ccgcaacagc agaccagtcg 4441 cagtcgcatc atgtcgcgca tcttttaaag atttaaaacc ccccctgtaa atagaacgac 4501 cccttttttg tgaaaaaagc ccctcccccc atccagctcc ttccaggcga cgaaaaaaaa 4561 atacgaccag aggcatttaa taccaaagca ataaccgtta tgtaatataa ttttaaagat 4621 ttgaaaaaac caacacacct ttttttttgt atcttaaatc tttaactaaa acacacacat 4681 ttttttccaa catttttttt tcgtgcttgt aatttataaa tatacaaaaa aatagtacat 4741 agtaatatac gtaaaaatac ctataataat cgcttagtga gtaagattgt gtggacacac 4801 attttccagt gtattttcta ggactaagtg aaaagccagg cgaaggattt gtatagaatg 4861 aaaaacctac tatgactaaa agtaaaaaga aagcaaaaac aaaaaaaata tgaaaaaatt 4921 ccacaaaaat aagcaaaatt atactctaaa cttaaaggca ttaaactata atgaatatta 4981 tgaatgaata tttttttcat cgatgtacat ttcttagtaa atctagatcc ctagcactaa 5041 agacgaacac ttgtaaaaat cccaaacgta attctaatta ctattattat cgtatcgtat 5101 gtattcgttc cattcgattt tccccctgat ttatttcccc tcctttcctt cccttatttt 5161 tttgcctaga cataattcta ttattaaatg taatttaaat gaaaaagaaa acgaaaaata 5221 atcaaatttt tttacataca taaataaata ttaatgtaaa acacaaattt tttttaaaca 5281 attttagtct aagctgaaaa tgaaaagggg aaaatcaagc atagaaattg aggcagcagg 5341 caaattgaga gataaagtgg aggcgaaaat gcaaatttgt acgtaaaact tcaagtgaaa 5401 tataagaaat ataaggaagc aattaacgag aaaataccga aacaacaaca aacaaacaaa 5461 caaaagaaaa cgacaaaaaa ctagatttag aagactgaag aactgagaac gaaaattgtt 5521 ttcttgctac aaaaaagaag aaagtaaaaa agacagaagg acgaaaaggg aaaaacgaaa 5581 aagacgataa atagagagag caggagaacg gacaatgaat aggaagaaaa aggaggtaga 5641 aaggacacaa gagagagtaa atttttttat aaattgtttt tttgctgttg attttcgtta 5701 tttgattgaa actaaaacaa aagattgaga tccaaaaatc caaaatttta attaatattt 5761 aattgtttgt ttttgtagtg aaaatacctt tttgagagcg aaattagttt aaaccttgtt 5821 ttgtttcgag tcccccgaaa atcgaacaca taaaatctaa aatcccacct ggaaatcccc 5881 ctactaaagc agttgaatcc caaaactgcc ttaatactgg cgatttccta cgtttttatc 5941 gacgaagttt accgtacata atttatggaa ttcgacatgt actaaattta agaacgaggt 6001 tttaatatgc attatgtttc acatatatag aacatatata tataaagcga aaactgaata 6061 aacaaaaatc aatgaaaatt taaaaaaaa