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LOCUS XM_017145982 3698 bp mRNA linear INV 09-DEC-2024 transcript variant X9, mRNA. ACCESSION XM_017145982 VERSION XM_017145982.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017145982.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3698 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3698 /gene="HDAC6" /note="histone deacetylase 6; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108060320" CDS 674..3565 /gene="HDAC6" /codon_start=1 /product="histone deacetylase 6 isoform X9" /protein_id="XP_017001471.2" /db_xref="GeneID:108060320" /translation="MSPPIVTRRSAQQAKIQTRAMASKSKGAAGATAATAAGVIGGGG GSSAGGGSGGISAADPRKANKPSAALLEAKRRARNMLKNQSNVMQECVTDIFQNAVDC KGAVRKPTALIYDESMSQHCCLWDKEHYECPERFTRVLERCRELNLAERCLELPSRSA TKEEILRLHTEEHFERLKQTSGIRDDERMEDLSSRYDSIYIHPSTFELSLLATGSTIE LVDHLIAGKAQNGMAIIRPPGHHAMKAEFNGYCFFNNVALAAQHALDVHKLQRILIID YDVHHGQGTQRFFYNDPRVVYFSIHRFEHGSFWPHLQESDYHAIGSGAGRGYNFNVPL NAIGMTNGDYLAIFQQLLLPVALEFQPELIIVSAGYDAALGCPEGEMEVTPACYPHLL NPLLRLADSRVAVVLEGGYCLDSLAEGAALTLRSLLGDPCPRLVEVLPLPRPELTQAL LSCIAVHRTHWRCLQLQRTYDSKELLDQEKAQTDLHKLLRLWIGGPPPVDRYPTRDTA IPLPPEKLARNAARLQVLRTETKLSLPAVRVCYSYDAQMLLHCNLDDPGHPEQPSRVQ HIHKMHEEYGLLARMKQLAPRAATTDEVCLAHTRSHVNSVRRLMGRDPEELHRVAAGY NSVYLHPRTFDCATLAAGAVLQAVDSVLRGESRHGICNVRPPGHHAEQDQPHGFCIFN NVAIAAQYAIRDFGLERVLIVDWDVHHGNGTQHIFEANPKVLYISLHRYEHGAFFPKG PDGNYDVVGKGAGRGFNVNIPWNKKGMGDLEYALAFQQLIMPIAYEFNPQLVLVSAGF DAAIGDPLGGCKVTPEGYGLLTHWLSALAGGRIVVCLEGGYNVNSISYAMTMCTKTLL GDPVPTPQLGAVALQKPPTVAHQSCVESLQSCLEIQRSHWRSLEFVGRRLPAGDCVGE NNNEDFLTASLRQLNISNDDAPGAAGGAAGDRNACGDERPSGSKPKVKQ" misc_feature 1040..2056 /gene="HDAC6" /note="Histone deacetylase 6, domain 1 and histone deacetylase 10; Region: HDAC10_HDAC6-dom1; cd10002" /db_xref="CDD:212526" misc_feature order(1391..1396,1418..1423,1505..1507,1511..1513, 1784..1786,1898..1900) /gene="HDAC6" /note="putative active site [active]" /db_xref="CDD:212526" misc_feature 2300..3373 /gene="HDAC6" /note="Histone deacetylase 6, domain 2; Region: HDAC6-dom2; cd10003" /db_xref="CDD:212527" misc_feature order(2675..2680,2702..2707,2789..2791,2795..2797, 3068..3070,3182..3184) /gene="HDAC6" /note="putative active site [active]" /db_xref="CDD:212527" ORIGIN 1 ttgctcggga tttctggttc aggttctgat tgcacgtgtg tgtgcgtgtg gtgtgcctat 61 gtatctgtgc tgttgctgca tcttcgtctg ctcaaataaa aaaatcacga atgcaactgc 121 aacgtttttg aaaatcaaac gaaaagccgc cagctaaagt ccaattttgt tactcagtgt 181 tttaagtatt aagtagtgca agcagccgac aaacaaaaag tacatatatc aaaaggaaaa 241 acaacaacat cgaatgcaga gcaactgaag cgcaaacaca cacaaacaaa caagcagtag 301 ggattgtgag agcgagatag aaataaacta ggcataattt atagcgcaca caaaataaaa 361 aagaaggcta attataagag aaaagtgtgc gactcggaat cgataaataa cgggactaaa 421 ggagtgagag gtgagccggg aaatttgttt ggaacaaacg gtatataata cacaacagcg 481 aagaagaaga agtgggaggg gaagaacaac aacaagcagc tgtgaatcag tccgtcccgc 541 tcccccacgc cccccgcttg ctgctgctgc tgctgcttcc tcttcctacg ccggatattc 601 ggatttggat tcggaatcgg attcggattt ggttttcggt tggttttcca attcggactc 661 gtttacccac aacatgagcc cgcccatcgt cacgcgacgg agcgcgcagc aggccaagat 721 tcagacgcgg gcaatggcca gtaagtcgaa gggagcggcg ggagcgacgg cggcgacggc 781 ggccggggtg atcggcggcg gcggcggctc ctctgccggc ggcggcagcg gcggtatcag 841 tgccgccgat ccgcgaaagg cgaacaaacc gagcgcagcg ctcttggagg cgaaacgtcg 901 agcgcggaac atgctcaaga accagagcaa cgtcatgcag gagtgcgtca cggatatatt 961 ccagaatgct gtcgattgca agggcgctgt gcgaaagccc acggccctca tctacgacga 1021 gtcgatgagc cagcactgct gtttgtggga caaggagcac tacgagtgcc ccgagcgctt 1081 cacacgcgtc ctggagcgct gccgcgaact gaatctggcg gagcgctgct tggagttgcc 1141 ctcgcgatcg gccaccaagg aggagattct gcggctgcac acggaggagc actttgagcg 1201 cctgaagcag acctcgggga ttcgtgatga cgagcgcatg gaggacctga gctcccgcta 1261 cgattcaatc tacattcatc cgtccacatt cgagctttcc ctgctggcca ccggatccac 1321 catcgagttg gtggaccatc tgatcgctgg aaaggcccag aatggcatgg ccatcatccg 1381 gccgccgggt catcatgcca tgaaggccga gttcaatggc tattgcttct tcaacaacgt 1441 ggccctggcc gcccagcacg ccctggatgt ccacaagctg cagcgcatcc tgatcatcga 1501 ctacgacgtc catcatggac agggaacgca gaggttcttc tacaacgatc ccagggtggt 1561 ctacttctcg atccatcgct tcgagcacgg cagcttctgg ccgcacctgc aggagtcgga 1621 ttaccatgcc atcggatcgg gagcgggcag gggctacaac ttcaatgtgc ccctgaatgc 1681 gattgggatg acgaacggcg attacctggc cattttccag cagctcctgc tgccggtggc 1741 cctggagttt cagccggagc tgattatcgt ttcggctggc tacgatgcgg ccctcggttg 1801 tccggagggc gaaatggagg tgacgccggc ctgctatccg catctgctca atcccctcct 1861 gcgactcgcc gactcgcggg tggccgtcgt cctggagggc ggctattgcc tggactcgct 1921 ggccgagggt gccgctttga ccctgcgctc cctgctcggc gatccctgcc cccgactggt 1981 ggaggtactg cctctgccgc gtcccgaact cacgcaggcg ctgctcagct gcattgccgt 2041 ccatcggacg cactggcgct gcctgcagct gcagcgaacc tatgattcga aggagttgct 2101 cgaccaggag aaggctcaaa cggacctaca caagctgctg cgcctttgga taggcggacc 2161 accgccagtg gatcgttatc ccaccaggga tactgctatt cctctgcccc ccgagaagct 2221 ggccaggaat gcggcccgtc tgcaggtcct ccgcaccgaa acaaagctat cgttgcccgc 2281 ggtgagagtc tgctactcgt acgacgccca gatgctgctc cactgcaatc tcgacgatcc 2341 cggccatccg gagcagccat cgcgcgtcca gcacatccac aagatgcacg aggagtacgg 2401 cctgctggcc aggatgaagc agctagcgcc gagggcggcc accaccgatg aagtttgcct 2461 ggcccacacg cgatcgcatg tgaattcggt gcgtcgactg atgggacgcg acccggagga 2521 actgcatcgc gtggcggcgg gctacaattc ggtgtatctg catccgcgca ccttcgattg 2581 cgccaccttg gccgccggcg ccgtgctcca ggcggtggac agtgtgctgc gcggcgagtc 2641 gcggcacggc atctgcaacg ttcgtccgcc gggccatcat gccgagcagg atcagccgca 2701 tggcttctgt atcttcaaca atgtggccat tgcggcgcag tatgctatca gggattttgg 2761 tttggaacgt gtgcttattg tcgattggga tgtgcatcac ggcaacggga cgcagcacat 2821 cttcgaggcg aatcccaagg tgctttacat aagccttcat cgctacgagc atggagcctt 2881 ctttcccaag ggacccgacg gcaactacga tgtggtgggc aagggagccg gacggggatt 2941 caatgtgaat ataccctgga ataagaaggg catgggtgat ttggagtacg ctctggcctt 3001 ccagcaactg atcatgccca ttgcctacga gttcaacccg caactggtcc tggtctccgc 3061 gggcttcgat gcggccatcg gcgatccgct gggcggctgc aaggtgacgc ccgagggcta 3121 cggcctgctc acccattggc tctctgcgct ggccggcggc aggattgtcg tctgcctgga 3181 gggtggctac aatgtaaact ccatttcgta tgccatgacc atgtgcacca agacgctact 3241 gggcgatccg gtgccgacgc cccagctggg tgcagtggct ctgcagaagc cgccgacggt 3301 ggcccatcag agctgcgtgg aatcgctgca gtcgtgcctg gagattcaac gcagccactg 3361 gcggagcttg gagtttgtgg gccgacggtt gccggccggc gattgtgtgg gcgagaataa 3421 caacgaggat tttcttaccg cctccttgcg acagttgaat atctcaaatg acgacgcacc 3481 gggggcggcg ggcggcgcgg ccggcgatcg gaacgcttgc ggcgatgagc ggcccagcgg 3541 cagcaagccc aaagtcaagc aatagacagc ggggcggcgt gcagcgtttg cggatcgacg 3601 ggggagaact gggtgtgtct gggctgccgg ctggtgggct gcggtcgcta catgggcggc 3661 cacatggagc tgcactcggc ggaggcacag catccgct