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LOCUS XM_017145979 4411 bp mRNA linear INV 09-DEC-2024 transcript variant X3, mRNA. ACCESSION XM_017145979 VERSION XM_017145979.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017145979.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4411 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4411 /gene="HDAC6" /note="histone deacetylase 6; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108060320" CDS 677..4036 /gene="HDAC6" /codon_start=1 /product="histone deacetylase 6 isoform X3" /protein_id="XP_017001468.2" /db_xref="GeneID:108060320" /translation="MSPPIVTRRSAQQAKIQTRAMASKSKGAAGATAATAAGVIGGGG GSSAGGGSGGISAADPRKANKPSAALLEAKRRARNMLKNQSNVMQECVTDIFQNAVDC KGAVRKPTALIYDESMSQHCCLWDKEHYECPERFTRVLERCRELNLAERCLELPSRSA TKEEILRLHTEEHFERLKQTSGIRDDERMEDLSSRYDSIYIHPSTFELSLLATGSTIE LVDHLIAGKAQNGMAIIRPPGHHAMKAEFNGYCFFNNVALAAQHALDVHKLQRILIID YDVHHGQGTQRFFYNDPRVVYFSIHRFEHGSFWPHLQESDYHAIGSGAGRGYNFNVPL NAIGMTNGDYLAIFQQLLLPVALEFQPELIIVSAGYDAALGCPEGEMEVTPACYPHLL NPLLRLADSRVAVVLEGGYCLDSLAEGAALTLRSLLGDPCPRLVEVLPLPRPELTQAL LSCIAVHRTHWRCLQLQRTYDSKELLDQEKAQTDLHKLLRLWIGGPPPVDRYPTRDTA IPLPPEKLARNAARLQVLRTETKLSLPAVRVCYSYDAQMLLHCNLDDPGHPEQPSRVQ HIHKMHEEYGLLARMKQLAPRAATTDEVCLAHTRSHVNSVRRLMGRDPEELHRVAAGY NSVYLHPRTFDCATLAAGAVLQAVDSVLRGESRHGICNVRPPGHHAEQDQPHGFCIFN NVAIAAQYAIRDFGLERVLIVDWDVHHGNGTQHIFEANPKVLYISLHRYEHGAFFPKG PDGNYDVVGKGAGRGFNVNIPWNKKGMGDLEYALAFQQLIMPIAYEFNPQLVLVSAGF DAAIGDPLGGCKVTPEGYGLLTHWLSALAGGRIVVCLEGGYNVNSISYAMTMCTKTLL GDPVPTPQLGAVALQKPPTVAHQSCVESLQSCLEIQRSHWRSLEFVGRRLPAGDCVGE NNNEDFLTASLRQLNISNDDAPGAAGGAAGDRNACGDERPSGSKPKVKALEQNEMFAV YPLKTCPHLSLLRPEEAPQSAIDSGAACSVCGSTGENWVCLGCRLVGCGRYMGGHMEL HSAEAQHPLAMSQADLSVWCYACSSYVDHPRLYAYLNPLHVDKFQEPMAWTHGCPRRE DGCYPLGADGRDDDEDLAGSSGLCLRLERNN" misc_feature 1043..2059 /gene="HDAC6" /note="Histone deacetylase 6, domain 1 and histone deacetylase 10; Region: HDAC10_HDAC6-dom1; cd10002" /db_xref="CDD:212526" misc_feature order(1394..1399,1421..1426,1508..1510,1514..1516, 1787..1789,1901..1903) /gene="HDAC6" /note="putative active site [active]" /db_xref="CDD:212526" misc_feature 2303..3376 /gene="HDAC6" /note="Histone deacetylase 6, domain 2; Region: HDAC6-dom2; cd10003" /db_xref="CDD:212527" misc_feature order(2678..2683,2705..2710,2792..2794,2798..2800, 3071..3073,3185..3187) /gene="HDAC6" /note="putative active site [active]" /db_xref="CDD:212527" misc_feature 3674..3862 /gene="HDAC6" /note="Zn-finger in ubiquitin-hydrolases and other protein; Region: zf-UBP; pfam02148" /db_xref="CDD:460464" polyA_site 4411 /gene="HDAC6" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tgtttgctcg ggatttctgg ttcaggttct gattgcacgt gtgtgtgcgt gtggtgtgcc 61 tatgtatctg tgctgttgct gcatcttcgt ctgctcaaat aaaaaaatca cgaatgcaac 121 tgcaacgttt ttgaaaatca aacgaaaagc cgccagctaa agtccaattt tgttactcag 181 tgttttaagt attaagtagt gcaagcagcc gacaaacaaa aagtacatat atcaaaagga 241 aaaacaacaa catcgaatgc agagcaactg aagcgcaaac acacacaaac aaacaagcag 301 tagggattgt gagagcgaga tagaaataaa ctaggcataa tttatagcgc acacaaaata 361 aaaaagaagg ctaattataa gagaaaagtg tgcgactcgg aatcgataaa taacgggact 421 aaaggagtga gaggtgagcc gggaaatttg tttggaacaa acggtatata atacacaaca 481 gcgaagaaga agaagtggga ggggaagaac aacaacaagc agctgtgaat cagtccgtcc 541 cgctccccca cgccccccgc ttgctgctgc tgctgctgct tcctcttcct acgccggata 601 ttcggatttg gattcggaat cggattcgga tttggttttc ggttggtttt ccaattcgga 661 ctcgtttacc cacaacatga gcccgcccat cgtcacgcga cggagcgcgc agcaggccaa 721 gattcagacg cgggcaatgg ccagtaagtc gaagggagcg gcgggagcga cggcggcgac 781 ggcggccggg gtgatcggcg gcggcggcgg ctcctctgcc ggcggcggca gcggcggtat 841 cagtgccgcc gatccgcgaa aggcgaacaa accgagcgca gcgctcttgg aggcgaaacg 901 tcgagcgcgg aacatgctca agaaccagag caacgtcatg caggagtgcg tcacggatat 961 attccagaat gctgtcgatt gcaagggcgc tgtgcgaaag cccacggccc tcatctacga 1021 cgagtcgatg agccagcact gctgtttgtg ggacaaggag cactacgagt gccccgagcg 1081 cttcacacgc gtcctggagc gctgccgcga actgaatctg gcggagcgct gcttggagtt 1141 gccctcgcga tcggccacca aggaggagat tctgcggctg cacacggagg agcactttga 1201 gcgcctgaag cagacctcgg ggattcgtga tgacgagcgc atggaggacc tgagctcccg 1261 ctacgattca atctacattc atccgtccac attcgagctt tccctgctgg ccaccggatc 1321 caccatcgag ttggtggacc atctgatcgc tggaaaggcc cagaatggca tggccatcat 1381 ccggccgccg ggtcatcatg ccatgaaggc cgagttcaat ggctattgct tcttcaacaa 1441 cgtggccctg gccgcccagc acgccctgga tgtccacaag ctgcagcgca tcctgatcat 1501 cgactacgac gtccatcatg gacagggaac gcagaggttc ttctacaacg atcccagggt 1561 ggtctacttc tcgatccatc gcttcgagca cggcagcttc tggccgcacc tgcaggagtc 1621 ggattaccat gccatcggat cgggagcggg caggggctac aacttcaatg tgcccctgaa 1681 tgcgattggg atgacgaacg gcgattacct ggccattttc cagcagctcc tgctgccggt 1741 ggccctggag tttcagccgg agctgattat cgtttcggct ggctacgatg cggccctcgg 1801 ttgtccggag ggcgaaatgg aggtgacgcc ggcctgctat ccgcatctgc tcaatcccct 1861 cctgcgactc gccgactcgc gggtggccgt cgtcctggag ggcggctatt gcctggactc 1921 gctggccgag ggtgccgctt tgaccctgcg ctccctgctc ggcgatccct gcccccgact 1981 ggtggaggta ctgcctctgc cgcgtcccga actcacgcag gcgctgctca gctgcattgc 2041 cgtccatcgg acgcactggc gctgcctgca gctgcagcga acctatgatt cgaaggagtt 2101 gctcgaccag gagaaggctc aaacggacct acacaagctg ctgcgccttt ggataggcgg 2161 accaccgcca gtggatcgtt atcccaccag ggatactgct attcctctgc cccccgagaa 2221 gctggccagg aatgcggccc gtctgcaggt cctccgcacc gaaacaaagc tatcgttgcc 2281 cgcggtgaga gtctgctact cgtacgacgc ccagatgctg ctccactgca atctcgacga 2341 tcccggccat ccggagcagc catcgcgcgt ccagcacatc cacaagatgc acgaggagta 2401 cggcctgctg gccaggatga agcagctagc gccgagggcg gccaccaccg atgaagtttg 2461 cctggcccac acgcgatcgc atgtgaattc ggtgcgtcga ctgatgggac gcgacccgga 2521 ggaactgcat cgcgtggcgg cgggctacaa ttcggtgtat ctgcatccgc gcaccttcga 2581 ttgcgccacc ttggccgccg gcgccgtgct ccaggcggtg gacagtgtgc tgcgcggcga 2641 gtcgcggcac ggcatctgca acgttcgtcc gccgggccat catgccgagc aggatcagcc 2701 gcatggcttc tgtatcttca acaatgtggc cattgcggcg cagtatgcta tcagggattt 2761 tggtttggaa cgtgtgctta ttgtcgattg ggatgtgcat cacggcaacg ggacgcagca 2821 catcttcgag gcgaatccca aggtgcttta cataagcctt catcgctacg agcatggagc 2881 cttctttccc aagggacccg acggcaacta cgatgtggtg ggcaagggag ccggacgggg 2941 attcaatgtg aatataccct ggaataagaa gggcatgggt gatttggagt acgctctggc 3001 cttccagcaa ctgatcatgc ccattgccta cgagttcaac ccgcaactgg tcctggtctc 3061 cgcgggcttc gatgcggcca tcggcgatcc gctgggcggc tgcaaggtga cgcccgaggg 3121 ctacggcctg ctcacccatt ggctctctgc gctggccggc ggcaggattg tcgtctgcct 3181 ggagggtggc tacaatgtaa actccatttc gtatgccatg accatgtgca ccaagacgct 3241 actgggcgat ccggtgccga cgccccagct gggtgcagtg gctctgcaga agccgccgac 3301 ggtggcccat cagagctgcg tggaatcgct gcagtcgtgc ctggagattc aacgcagcca 3361 ctggcggagc ttggagtttg tgggccgacg gttgccggcc ggcgattgtg tgggcgagaa 3421 taacaacgag gattttctta ccgcctcctt gcgacagttg aatatctcaa atgacgacgc 3481 accgggggcg gcgggcggcg cggccggcga tcggaacgct tgcggcgatg agcggcccag 3541 cggcagcaag cccaaagtca aggccctcga gcagaatgag atgttcgccg tgtatccgct 3601 caagacgtgc ccgcatttga gtctcctgcg accggaggag gcgccgcaat cagcaataga 3661 cagcggggcg gcgtgcagcg tttgcggatc gacgggggag aactgggtgt gtctgggctg 3721 ccggctggtg ggctgcggtc gctacatggg cggccacatg gagctgcact cggcggaggc 3781 acagcatccg ctggcgatga gccaggcgga cctctcggtg tggtgctatg cgtgctcctc 3841 gtacgtggat catccccgcc tgtatgccta tctcaatccg ctgcatgtgg acaagttcca 3901 ggagccgatg gcctggacac atggctgtcc gcggcgtgag gatggctgct atcccttggg 3961 agccgacggt cgggatgatg atgaggattt ggccgggagc agcggcctct gcctgcggct 4021 ggagcgcaac aactgaccct tggccatccg cgtgctggac gccctcacgg actacatgtg 4081 cacgctctgc ccgccgctca gacacctcat ccagttcctg gccgagcacc tctggccgct 4141 gctggagcgc atttacctaa acctcctgca ctacttcctg gcccattgag ccagtgaatc 4201 cttctcccgc atcccagatc ctcctgcata ccagttgccc taaactaaat ataaacaaac 4261 aaaagatgaa ggaaattatt gttaattcgg gaggtgccac ttggccaggc ggctgcctcc 4321 ccaaatttat acaaataaaa attgttaatg ttatcaacta atgatttaat aaagacttcg 4381 agtgtttttc gagtgtattt tagccgacaa a