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LOCUS XM_017145977 4449 bp mRNA linear INV 09-DEC-2024 transcript variant X1, mRNA. ACCESSION XM_017145977 VERSION XM_017145977.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017145977.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4449 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4449 /gene="HDAC6" /note="histone deacetylase 6; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108060320" CDS 676..4074 /gene="HDAC6" /codon_start=1 /product="histone deacetylase 6 isoform X1" /protein_id="XP_017001466.2" /db_xref="GeneID:108060320" /translation="MSPPIVTRRSAQQAKIQTRAMASKSKGAAGATAATAAGVIGGGG GSSAGGGSGGISAADPRKANKPSAALLEAKRRARNMLKNQSNVMQECVTDIFQNAVDC KGAVRKPTALIYDESMSQHCCLWDKEHYECPERFTRVLERCRELNLAERCLELPSRSA TKEEILRLHTEEHFERLKQTSGIRDDERMEDLSSRYDSIYIHPSTFELSLLATGSTIE LVDHLIAGKAQNGMAIIRPPGHHAMKAEFNGYCFFNNVALAAQHALDVHKLQRILIID YDVHHGQGTQRFFYNDPRVVYFSIHRFEHGSFWPHLQESDYHAIGSGAGRGYNFNVPL NAIGMTNGDYLAIFQQLLLPVALEFQPELIIVSAGYDAALGCPEGEMEVTPACYPHLL NPLLRLADSRVAVVLEGGYCLDSLAEGAALTLRSLLGDPCPRLVEVLPLPRPELTQAL LSCIAVHRTHWRCLQLQRTYDSKELLDQEKAQTDLHKLLRLWIGGPPPVDRYPTRDTA IPLPPEKLARNAARLQVLRTETKLSLPAVRVCYSYDAQMLLHCNLDDPGHPEQPSRVQ HIHKMHEEYGLLARMKQLAPRAATTDEVCLAHTRSHVNSVRRLMGRDPEELHRVAAGY NSVYLHPRTFDCATLAAGAVLQAVDSVLRGESRHGICNVRPPGHHAEQDQPHGFCIFN NVAIAAQYAIRDFGLERVLIVDWDVHHGNGTQHIFEANPKVLYISLHRYEHGAFFPKG PDGNYDVVGKGAGRGFNVNIPWNKKGMGDLEYALAFQQLIMPIAYEFNPQLVLVSAGF DAAIGDPLGGCKVTPEGYGLLTHWLSALAGGRIVVCLEGGYNVNSISYAMTMCTKTLL GDPVPTPQLGAVALQKPPTVAHQSCVESLQSCLEIQRSHWRSLEFVGRRLPAGDCVGE NNNEDFLTASLRQLNISNDDAPGAAGGAAGDRNACGDERPSGSKPKVKVKTLTEYLAE NKEALEQNEMFAVYPLKTCPHLSLLRPEEAPQSAIDSGAACSVCGSTGENWVCLGCRL VGCGRYMGGHMELHSAEAQHPLAMSQADLSVWCYACSSYVDHPRLYAYLNPLHVDKFQ EPMAWTHGCPRREDGCYPLGADGRDDDEDLAGSSGLCLRLERNN" misc_feature 1042..2058 /gene="HDAC6" /note="Histone deacetylase 6, domain 1 and histone deacetylase 10; Region: HDAC10_HDAC6-dom1; cd10002" /db_xref="CDD:212526" misc_feature order(1393..1398,1420..1425,1507..1509,1513..1515, 1786..1788,1900..1902) /gene="HDAC6" /note="putative active site [active]" /db_xref="CDD:212526" misc_feature 2302..3375 /gene="HDAC6" /note="Histone deacetylase 6, domain 2; Region: HDAC6-dom2; cd10003" /db_xref="CDD:212527" misc_feature order(2677..2682,2704..2709,2791..2793,2797..2799, 3070..3072,3184..3186) /gene="HDAC6" /note="putative active site [active]" /db_xref="CDD:212527" misc_feature 3712..3900 /gene="HDAC6" /note="Zn-finger in ubiquitin-hydrolases and other protein; Region: zf-UBP; pfam02148" /db_xref="CDD:460464" polyA_site 4449 /gene="HDAC6" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gtttgctcgg gatttctggt tcaggttctg attgcacgtg tgtgtgcgtg tggtgtgcct 61 atgtatctgt gctgttgctg catcttcgtc tgctcaaata aaaaaatcac gaatgcaact 121 gcaacgtttt tgaaaatcaa acgaaaagcc gccagctaaa gtccaatttt gttactcagt 181 gttttaagta ttaagtagtg caagcagccg acaaacaaaa agtacatata tcaaaaggaa 241 aaacaacaac atcgaatgca gagcaactga agcgcaaaca cacacaaaca aacaagcagt 301 agggattgtg agagcgagat agaaataaac taggcataat ttatagcgca cacaaaataa 361 aaaagaaggc taattataag agaaaagtgt gcgactcgga atcgataaat aacgggacta 421 aaggagtgag aggtgagccg ggaaatttgt ttggaacaaa cggtatataa tacacaacag 481 cgaagaagaa gaagtgggag gggaagaaca acaacaagca gctgtgaatc agtccgtccc 541 gctcccccac gccccccgct tgctgctgct gctgctgctt cctcttccta cgccggatat 601 tcggatttgg attcggaatc ggattcggat ttggttttcg gttggttttc caattcggac 661 tcgtttaccc acaacatgag cccgcccatc gtcacgcgac ggagcgcgca gcaggccaag 721 attcagacgc gggcaatggc cagtaagtcg aagggagcgg cgggagcgac ggcggcgacg 781 gcggccgggg tgatcggcgg cggcggcggc tcctctgccg gcggcggcag cggcggtatc 841 agtgccgccg atccgcgaaa ggcgaacaaa ccgagcgcag cgctcttgga ggcgaaacgt 901 cgagcgcgga acatgctcaa gaaccagagc aacgtcatgc aggagtgcgt cacggatata 961 ttccagaatg ctgtcgattg caagggcgct gtgcgaaagc ccacggccct catctacgac 1021 gagtcgatga gccagcactg ctgtttgtgg gacaaggagc actacgagtg ccccgagcgc 1081 ttcacacgcg tcctggagcg ctgccgcgaa ctgaatctgg cggagcgctg cttggagttg 1141 ccctcgcgat cggccaccaa ggaggagatt ctgcggctgc acacggagga gcactttgag 1201 cgcctgaagc agacctcggg gattcgtgat gacgagcgca tggaggacct gagctcccgc 1261 tacgattcaa tctacattca tccgtccaca ttcgagcttt ccctgctggc caccggatcc 1321 accatcgagt tggtggacca tctgatcgct ggaaaggccc agaatggcat ggccatcatc 1381 cggccgccgg gtcatcatgc catgaaggcc gagttcaatg gctattgctt cttcaacaac 1441 gtggccctgg ccgcccagca cgccctggat gtccacaagc tgcagcgcat cctgatcatc 1501 gactacgacg tccatcatgg acagggaacg cagaggttct tctacaacga tcccagggtg 1561 gtctacttct cgatccatcg cttcgagcac ggcagcttct ggccgcacct gcaggagtcg 1621 gattaccatg ccatcggatc gggagcgggc aggggctaca acttcaatgt gcccctgaat 1681 gcgattggga tgacgaacgg cgattacctg gccattttcc agcagctcct gctgccggtg 1741 gccctggagt ttcagccgga gctgattatc gtttcggctg gctacgatgc ggccctcggt 1801 tgtccggagg gcgaaatgga ggtgacgccg gcctgctatc cgcatctgct caatcccctc 1861 ctgcgactcg ccgactcgcg ggtggccgtc gtcctggagg gcggctattg cctggactcg 1921 ctggccgagg gtgccgcttt gaccctgcgc tccctgctcg gcgatccctg cccccgactg 1981 gtggaggtac tgcctctgcc gcgtcccgaa ctcacgcagg cgctgctcag ctgcattgcc 2041 gtccatcgga cgcactggcg ctgcctgcag ctgcagcgaa cctatgattc gaaggagttg 2101 ctcgaccagg agaaggctca aacggaccta cacaagctgc tgcgcctttg gataggcgga 2161 ccaccgccag tggatcgtta tcccaccagg gatactgcta ttcctctgcc ccccgagaag 2221 ctggccagga atgcggcccg tctgcaggtc ctccgcaccg aaacaaagct atcgttgccc 2281 gcggtgagag tctgctactc gtacgacgcc cagatgctgc tccactgcaa tctcgacgat 2341 cccggccatc cggagcagcc atcgcgcgtc cagcacatcc acaagatgca cgaggagtac 2401 ggcctgctgg ccaggatgaa gcagctagcg ccgagggcgg ccaccaccga tgaagtttgc 2461 ctggcccaca cgcgatcgca tgtgaattcg gtgcgtcgac tgatgggacg cgacccggag 2521 gaactgcatc gcgtggcggc gggctacaat tcggtgtatc tgcatccgcg caccttcgat 2581 tgcgccacct tggccgccgg cgccgtgctc caggcggtgg acagtgtgct gcgcggcgag 2641 tcgcggcacg gcatctgcaa cgttcgtccg ccgggccatc atgccgagca ggatcagccg 2701 catggcttct gtatcttcaa caatgtggcc attgcggcgc agtatgctat cagggatttt 2761 ggtttggaac gtgtgcttat tgtcgattgg gatgtgcatc acggcaacgg gacgcagcac 2821 atcttcgagg cgaatcccaa ggtgctttac ataagccttc atcgctacga gcatggagcc 2881 ttctttccca agggacccga cggcaactac gatgtggtgg gcaagggagc cggacgggga 2941 ttcaatgtga atataccctg gaataagaag ggcatgggtg atttggagta cgctctggcc 3001 ttccagcaac tgatcatgcc cattgcctac gagttcaacc cgcaactggt cctggtctcc 3061 gcgggcttcg atgcggccat cggcgatccg ctgggcggct gcaaggtgac gcccgagggc 3121 tacggcctgc tcacccattg gctctctgcg ctggccggcg gcaggattgt cgtctgcctg 3181 gagggtggct acaatgtaaa ctccatttcg tatgccatga ccatgtgcac caagacgcta 3241 ctgggcgatc cggtgccgac gccccagctg ggtgcagtgg ctctgcagaa gccgccgacg 3301 gtggcccatc agagctgcgt ggaatcgctg cagtcgtgcc tggagattca acgcagccac 3361 tggcggagct tggagtttgt gggccgacgg ttgccggccg gcgattgtgt gggcgagaat 3421 aacaacgagg attttcttac cgcctccttg cgacagttga atatctcaaa tgacgacgca 3481 ccgggggcgg cgggcggcgc ggccggcgat cggaacgctt gcggcgatga gcggcccagc 3541 ggcagcaagc ccaaagtcaa ggtaaaaacg ctcaccgagt atttggccga gaacaaggag 3601 gccctcgagc agaatgagat gttcgccgtg tatccgctca agacgtgccc gcatttgagt 3661 ctcctgcgac cggaggaggc gccgcaatca gcaatagaca gcggggcggc gtgcagcgtt 3721 tgcggatcga cgggggagaa ctgggtgtgt ctgggctgcc ggctggtggg ctgcggtcgc 3781 tacatgggcg gccacatgga gctgcactcg gcggaggcac agcatccgct ggcgatgagc 3841 caggcggacc tctcggtgtg gtgctatgcg tgctcctcgt acgtggatca tccccgcctg 3901 tatgcctatc tcaatccgct gcatgtggac aagttccagg agccgatggc ctggacacat 3961 ggctgtccgc ggcgtgagga tggctgctat cccttgggag ccgacggtcg ggatgatgat 4021 gaggatttgg ccgggagcag cggcctctgc ctgcggctgg agcgcaacaa ctgacccttg 4081 gccatccgcg tgctggacgc cctcacggac tacatgtgca cgctctgccc gccgctcaga 4141 cacctcatcc agttcctggc cgagcacctc tggccgctgc tggagcgcat ttacctaaac 4201 ctcctgcact acttcctggc ccattgagcc agtgaatcct tctcccgcat cccagatcct 4261 cctgcatacc agttgcccta aactaaatat aaacaaacaa aagatgaagg aaattattgt 4321 taattcggga ggtgccactt ggccaggcgg ctgcctcccc aaatttatac aaataaaaat 4381 tgttaatgtt atcaactaat gatttaataa agacttcgag tgtttttcga gtgtatttta 4441 gccgacaaa