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LOCUS XM_017144632 3970 bp mRNA linear INV 09-DEC-2024 transcript variant X12, mRNA. ACCESSION XM_017144632 VERSION XM_017144632.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017144632.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3970 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3970 /gene="dnc" /note="phosphodiesterase dunce; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 37 Proteins" /db_xref="GeneID:108059389" CDS 274..2259 /gene="dnc" /codon_start=1 /product="3',5'-cyclic-AMP phosphodiesterase isoform X10" /protein_id="XP_017000121.1" /db_xref="GeneID:108059389" /translation="MLNKNSAASQSLPRVHSFFNMIPSIMQDDLAVTILNDRDNMFSI KSQRSHGEDLIVTPFAQILASLRSVRNNLLSLTNVPASNKRPNQSSSASRSGNPSGAP LSQGEEAYTRLATDTIEELDWCLDQLETIQTHRSVSDMASLKFKRMLNKELSHFSESS RSGNQISEYICSTFLDKQQEFDLPSLRVEDNPELVAANAAASGQQSAGQYARSRSPRG PPMSQISGVKRPLSHTNSFTGERLPTFGVETPRENELGTLLGELDTWGIQIFSIGEFS VNRPLTSVAYTIFQSRELLTSLMIPPKTFLNFMTTLEDHYVKDNPFHNSLHAADVTQS TNVLLNTPALEGVFTPLEVGGALFAACIHDVDHPGLTNQFLVNSSSELALMYNDESVL ENHHLAVAFKLLQNQGCDIFCNMQKKQRQTLRKMVIDIVLSTDMSKHMSLLADLKTMV ETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKPLPLYKRWVALLMEEFFLQGD KERESGMDISPMCDRHNATIEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEENR DYYQSMIPPSPPPSGVDENPQEDRIRFQVTLEESDQENLAELEEGDESGGESTTTGTT GTTAASALGGAGGGGGAGGGVAPRTGGCQNQPQHGGM" misc_feature 439..801 /gene="dnc" /note="Phosphodiesterase 4 upstream conserved regions (UCR); Region: PDE4_UCR; pfam18100" /db_xref="CDD:465648" misc_feature 1237..1959 /gene="dnc" /note="3'5'-cyclic nucleotide phosphodiesterase; Region: PDEase_I; pfam00233" /db_xref="CDD:459723" polyA_site 3970 /gene="dnc" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ctcgtttagc ggttgctcgt ggaaatttcg aaaaaatctc aaacaagccg cggaaatctc 61 agaaaacacc agcaagccag ccgattgctt caatcacaca gagaaactaa ataaacaggc 121 gacttaaaga ctttaatcga gcgaaagaaa aagaatttgc aactagtggg cccaagtggg 181 ccaaaagtga ttgtttattt tgatttaatc ataaacatcg tgtatatttt tttttgtttt 241 ctttatttgt aacttgtgaa taaatcaagc aaaatgctca acaaaaactc agctgcatcg 301 cagtcgctgc cgcgagtgca cagcttcttc aacatgatac cctcgataat gcaggacgat 361 ctggctgtga ccatactgaa cgatcgggac aacatgttct ccattaagtc gcagcgcagc 421 catggcgagg atctcattgt gacgcctttc gcccaaattt tagccagctt acgttcagtg 481 cgcaacaatt tattaagtct gacaaatgtt ccagcatcaa acaagcggcc caaccaatcc 541 tcgtcggcct cccgatcggg aaatccctcg ggagccccgc tgtcccaggg cgaggaggcc 601 tacacccgcc tggccaccga caccatcgag gagctggact ggtgcctcga ccagctggag 661 accatccaga cccatcgcag cgtctccgac atggcttcgc tcaagttcaa acgcatgctc 721 aacaaggagc tgtcacactt cagcgagtcc agcagatcgg gaaatcagat ttccgagtac 781 atttgttcca catttttgga caagcagcag gagttcgact tgccgtcgct gcgcgtggag 841 gataatccgg agctggtggc cgccaatgcc gccgccagcg gccagcagtc cgctggccag 901 tacgcccgct cccgctcccc ccgcggcccg cccatgtcgc agatcagcgg cgtgaagcgg 961 cccctttcgc acaccaacag cttcaccggc gaacggctgc ccaccttcgg cgtggagacg 1021 cccagggaga acgagctggg caccctgctc ggcgaactgg acacctgggg catccagata 1081 ttcagcatcg gcgagttcag cgtcaaccga ccgctcacca gtgtggcata caccatattt 1141 cagagtagag aattactgac cagtcttatg ataccaccga aaacttttct taactttatg 1201 actactctgg aggaccacta cgtcaaagac aatccgtttc acaattcgct gcatgccgcc 1261 gacgtgaccc agagcaccaa tgtgctactc aatacaccgg cgctggaggg cgtattcaca 1321 ccgctcgagg tgggcggggc actgttcgcc gcttgcatcc acgatgttga tcatcccggc 1381 ttaaccaatc agttcttggt taactcaagt tccgaactag cattaatgta caatgacgaa 1441 tctgttttgg aaaatcatca tttagctgtt gcctttaaat tattgcaaaa tcaaggatgt 1501 gatatattct gtaatatgca aaagaaacaa cgccaaacat tgaggaaaat ggttattgat 1561 attgtgctgt ccacggacat gtccaagcac atgagtctgc tggccgacct gaagacaatg 1621 gtggaaacca agaaggtggc cggctccgga gtcctgctgc tggacaacta caccgatcgc 1681 atacaggtgc tcgagaatct ggtgcactgc gccgatctga gcaatcccac caagccgctg 1741 ccgctttaca agcgctgggt ggccctgctc atggaggagt tcttcctgca gggcgacaag 1801 gagcgcgagt cgggcatgga catcagtccc atgtgcgatc gccacaacgc caccatcgag 1861 aagtcgcagg tgggcttcat cgactatatc gtccacccgc tgtgggagac ctgggcggac 1921 ctggtgcacc cggacgccca ggacatactc gacacgcttg aagagaacag agactactac 1981 cagagcatga taccgccctc gccgccgccg tcgggggtcg atgagaatcc gcaggaggac 2041 aggatacgct ttcaagtaac cctggaggag tccgaccagg agaacctcgc cgagctggag 2101 gagggcgacg agagtggcgg cgagagcacc accaccggaa caaccggaac caccgccgcc 2161 tccgcgctgg gcggggctgg gggcggtggc ggtgctggcg ggggcgtggc acccaggacg 2221 ggtggctgcc aaaaccaacc gcagcacggt ggaatgtgac ggagagtcgt gggaatttat 2281 cgcaaaatac aggaaaaggc tcacaacttt ttcctattac gttagtgact actattaaca 2341 cacaaaaacc aaacaaaaac caaaaacgaa aaactcaaaa aaaaacaaag aaaaactctt 2401 ggaaaaatgc aaaaaaaaaa tacaaaaaaa aaccaaaaag ccaactaaag aaatattaaa 2461 caaatgttta aagcatacaa agaatccaaa acagcaatag caaaagtacc gtttaactta 2521 taaagcctag agaaaaacga aaaaggaaat tagaaattta cttaatggaa caccgagatt 2581 gatgttgaaa atacactgaa aaaaagagat cacgaggaga tgagctaact aagagaaatc 2641 ttacatattg ttaaacgtac acacacacac taaatccaag acaaagcaaa gataatgaga 2701 aaccccattg ataagtaata ctaagaagat accaaaacta ccgccccctt cccccaatta 2761 tatagacgat ttttgttgca tgtgtaggca aatgattttt gttaaattca tctgaagtgg 2821 gacatcaatc ggagaaaaac cccctgagcc ccctaaccaa gtctcctctt ttaaaccatt 2881 gactaaagtg aaatatttaa aaacaagaaa aacaaccgaa cggaaggaat aattaatacg 2941 acttagctta agagaagttt ttaagttttg aatgttttgc atgcccgaac agattcattt 3001 tactcgattg ataacgttag atctaacttt agaccgatta acgctaacgg caacacacat 3061 atggaatttt ttatgattta gaccccagcg atagaagcga aaacaaaaag aaaaacaaaa 3121 actaaaacca accatgttaa gtgtaagaac ccagtgaatt aaaccaaaat tgaaagccac 3181 ccgagttaag accatttaat tcaaatctaa atccaaatcc cgaaccccaa acaacaaaga 3241 agaacagtct acagccagac tgtagttgta tagtaatata tatgatataa atattttttt 3301 ttaatattat ttgtaaataa tttaaatgtt ggactcgaat ttaaatcaag cggctagcaa 3361 atgttgcagc caaactaaaa ctaaaatgaa aacaaagcca aaaacacata aataacataa 3421 ataaggaagt aagtggagag aaaaaaagga aggtggaaaa gaaaggaaaa actattgtac 3481 aattagctaa agaatttcca tttcaatttt cgattttcga tttgaattgc aatttgattt 3541 gcttccagaa aacaagagaa agagaaagat gataaagata tagaaaagga aaggagaaga 3601 gatgagaaga aaagaaatta gagagagata aaccgaaaat aatgtcaaac gctgtcttcg 3661 caaatatttt tcgctatata tttacttata tcattattta ctagttacta agctacttac 3721 tgagccacac aatttaaaaa cgaaagagac aagacacccg gtcgagaaag agagggagca 3781 tcgatgaatt tagtgaacaa acattaaact tactggcaga aagcacacaa tttacaaacc 3841 acaaagcaaa ccaccagaaa agactcttca agcacaagca atttttagtt ttccaaatga 3901 aaaatgaaaa accaaagcaa agcaaaacca acacacaaag gaaaagcaaa acaagaaaaa 3961 acaaaaaaca