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LOCUS XM_017144631 3976 bp mRNA linear INV 09-DEC-2024 transcript variant X11, mRNA. ACCESSION XM_017144631 VERSION XM_017144631.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017144631.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3976 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3976 /gene="dnc" /note="phosphodiesterase dunce; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 39 Proteins" /db_xref="GeneID:108059389" CDS 274..2265 /gene="dnc" /codon_start=1 /product="3',5'-cyclic-AMP phosphodiesterase isoform X9" /protein_id="XP_017000120.1" /db_xref="GeneID:108059389" /translation="MLNKNSAASQSLPRVHSFFNMIPSIMQDDLAVTILNDRDNMFSI KSQRSHGEDLIVTPFAQILASLRSVRNNLLSLTNVPASNKSRRPNQSSSASRSGNPSG APLSQGEEAYTRLATDTIEELDWCLDQLETIQTHRSVSDMASLKFKRMLNKELSHFSE SSRSGNQISEYICSTFLDKQQEFDLPSLRVEDNPELVAANAAASGQQSAGQYARSRSP RGPPMSQISGVKRPLSHTNSFTGERLPTFGVETPRENELGTLLGELDTWGIQIFSIGE FSVNRPLTSVAYTIFQSRELLTSLMIPPKTFLNFMTTLEDHYVKDNPFHNSLHAADVT QSTNVLLNTPALEGVFTPLEVGGALFAACIHDVDHPGLTNQFLVNSSSELALMYNDES VLENHHLAVAFKLLQNQGCDIFCNMQKKQRQTLRKMVIDIVLSTDMSKHMSLLADLKT MVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKPLPLYKRWVALLMEEFFLQ GDKERESGMDISPMCDRHNATIEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEE NRDYYQSMIPPSPPPSGVDENPQEDRIRFQVTLEESDQENLAELEEGDESGGESTTTG TTGTTAASALGGAGGGGGAGGGVAPRTGGCQNQPQHGGM" misc_feature 439..807 /gene="dnc" /note="Phosphodiesterase 4 upstream conserved regions (UCR); Region: PDE4_UCR; pfam18100" /db_xref="CDD:465648" misc_feature 1243..1965 /gene="dnc" /note="3'5'-cyclic nucleotide phosphodiesterase; Region: PDEase_I; pfam00233" /db_xref="CDD:459723" polyA_site 3976 /gene="dnc" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ctcgtttagc ggttgctcgt ggaaatttcg aaaaaatctc aaacaagccg cggaaatctc 61 agaaaacacc agcaagccag ccgattgctt caatcacaca gagaaactaa ataaacaggc 121 gacttaaaga ctttaatcga gcgaaagaaa aagaatttgc aactagtggg cccaagtggg 181 ccaaaagtga ttgtttattt tgatttaatc ataaacatcg tgtatatttt tttttgtttt 241 ctttatttgt aacttgtgaa taaatcaagc aaaatgctca acaaaaactc agctgcatcg 301 cagtcgctgc cgcgagtgca cagcttcttc aacatgatac cctcgataat gcaggacgat 361 ctggctgtga ccatactgaa cgatcgggac aacatgttct ccattaagtc gcagcgcagc 421 catggcgagg atctcattgt gacgcctttc gcccaaattt tagccagctt acgttcagtg 481 cgcaacaatt tattaagtct gacaaatgtt ccagcatcaa acaaatccag gcggcccaac 541 caatcctcgt cggcctcccg atcgggaaat ccctcgggag ccccgctgtc ccagggcgag 601 gaggcctaca cccgcctggc caccgacacc atcgaggagc tggactggtg cctcgaccag 661 ctggagacca tccagaccca tcgcagcgtc tccgacatgg cttcgctcaa gttcaaacgc 721 atgctcaaca aggagctgtc acacttcagc gagtccagca gatcgggaaa tcagatttcc 781 gagtacattt gttccacatt tttggacaag cagcaggagt tcgacttgcc gtcgctgcgc 841 gtggaggata atccggagct ggtggccgcc aatgccgccg ccagcggcca gcagtccgct 901 ggccagtacg cccgctcccg ctccccccgc ggcccgccca tgtcgcagat cagcggcgtg 961 aagcggcccc tttcgcacac caacagcttc accggcgaac ggctgcccac cttcggcgtg 1021 gagacgccca gggagaacga gctgggcacc ctgctcggcg aactggacac ctggggcatc 1081 cagatattca gcatcggcga gttcagcgtc aaccgaccgc tcaccagtgt ggcatacacc 1141 atatttcaga gtagagaatt actgaccagt cttatgatac caccgaaaac ttttcttaac 1201 tttatgacta ctctggagga ccactacgtc aaagacaatc cgtttcacaa ttcgctgcat 1261 gccgccgacg tgacccagag caccaatgtg ctactcaata caccggcgct ggagggcgta 1321 ttcacaccgc tcgaggtggg cggggcactg ttcgccgctt gcatccacga tgttgatcat 1381 cccggcttaa ccaatcagtt cttggttaac tcaagttccg aactagcatt aatgtacaat 1441 gacgaatctg ttttggaaaa tcatcattta gctgttgcct ttaaattatt gcaaaatcaa 1501 ggatgtgata tattctgtaa tatgcaaaag aaacaacgcc aaacattgag gaaaatggtt 1561 attgatattg tgctgtccac ggacatgtcc aagcacatga gtctgctggc cgacctgaag 1621 acaatggtgg aaaccaagaa ggtggccggc tccggagtcc tgctgctgga caactacacc 1681 gatcgcatac aggtgctcga gaatctggtg cactgcgccg atctgagcaa tcccaccaag 1741 ccgctgccgc tttacaagcg ctgggtggcc ctgctcatgg aggagttctt cctgcagggc 1801 gacaaggagc gcgagtcggg catggacatc agtcccatgt gcgatcgcca caacgccacc 1861 atcgagaagt cgcaggtggg cttcatcgac tatatcgtcc acccgctgtg ggagacctgg 1921 gcggacctgg tgcacccgga cgcccaggac atactcgaca cgcttgaaga gaacagagac 1981 tactaccaga gcatgatacc gccctcgccg ccgccgtcgg gggtcgatga gaatccgcag 2041 gaggacagga tacgctttca agtaaccctg gaggagtccg accaggagaa cctcgccgag 2101 ctggaggagg gcgacgagag tggcggcgag agcaccacca ccggaacaac cggaaccacc 2161 gccgcctccg cgctgggcgg ggctgggggc ggtggcggtg ctggcggggg cgtggcaccc 2221 aggacgggtg gctgccaaaa ccaaccgcag cacggtggaa tgtgacggag agtcgtggga 2281 atttatcgca aaatacagga aaaggctcac aactttttcc tattacgtta gtgactacta 2341 ttaacacaca aaaaccaaac aaaaaccaaa aacgaaaaac tcaaaaaaaa acaaagaaaa 2401 actcttggaa aaatgcaaaa aaaaaataca aaaaaaaacc aaaaagccaa ctaaagaaat 2461 attaaacaaa tgtttaaagc atacaaagaa tccaaaacag caatagcaaa agtaccgttt 2521 aacttataaa gcctagagaa aaacgaaaaa ggaaattaga aatttactta atggaacacc 2581 gagattgatg ttgaaaatac actgaaaaaa agagatcacg aggagatgag ctaactaaga 2641 gaaatcttac atattgttaa acgtacacac acacactaaa tccaagacaa agcaaagata 2701 atgagaaacc ccattgataa gtaatactaa gaagatacca aaactaccgc ccccttcccc 2761 caattatata gacgattttt gttgcatgtg taggcaaatg atttttgtta aattcatctg 2821 aagtgggaca tcaatcggag aaaaaccccc tgagccccct aaccaagtct cctcttttaa 2881 accattgact aaagtgaaat atttaaaaac aagaaaaaca accgaacgga aggaataatt 2941 aatacgactt agcttaagag aagtttttaa gttttgaatg ttttgcatgc ccgaacagat 3001 tcattttact cgattgataa cgttagatct aactttagac cgattaacgc taacggcaac 3061 acacatatgg aattttttat gatttagacc ccagcgatag aagcgaaaac aaaaagaaaa 3121 acaaaaacta aaaccaacca tgttaagtgt aagaacccag tgaattaaac caaaattgaa 3181 agccacccga gttaagacca tttaattcaa atctaaatcc aaatcccgaa ccccaaacaa 3241 caaagaagaa cagtctacag ccagactgta gttgtatagt aatatatatg atataaatat 3301 ttttttttaa tattatttgt aaataattta aatgttggac tcgaatttaa atcaagcggc 3361 tagcaaatgt tgcagccaaa ctaaaactaa aatgaaaaca aagccaaaaa cacataaata 3421 acataaataa ggaagtaagt ggagagaaaa aaaggaaggt ggaaaagaaa ggaaaaacta 3481 ttgtacaatt agctaaagaa tttccatttc aattttcgat tttcgatttg aattgcaatt 3541 tgatttgctt ccagaaaaca agagaaagag aaagatgata aagatataga aaaggaaagg 3601 agaagagatg agaagaaaag aaattagaga gagataaacc gaaaataatg tcaaacgctg 3661 tcttcgcaaa tatttttcgc tatatattta cttatatcat tatttactag ttactaagct 3721 acttactgag ccacacaatt taaaaacgaa agagacaaga cacccggtcg agaaagagag 3781 ggagcatcga tgaatttagt gaacaaacat taaacttact ggcagaaagc acacaattta 3841 caaaccacaa agcaaaccac cagaaaagac tcttcaagca caagcaattt ttagttttcc 3901 aaatgaaaaa tgaaaaacca aagcaaagca aaaccaacac acaaaggaaa agcaaaacaa 3961 gaaaaaacaa aaaaca