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LOCUS XM_017144627 5304 bp mRNA linear INV 09-DEC-2024 transcript variant X4, mRNA. ACCESSION XM_017144627 VERSION XM_017144627.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017144627.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5304 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5304 /gene="dnc" /note="phosphodiesterase dunce; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 38 Proteins" /db_xref="GeneID:108059389" CDS 399..3593 /gene="dnc" /codon_start=1 /product="3',5'-cyclic-AMP phosphodiesterase isoform X3" /protein_id="XP_017000116.2" /db_xref="GeneID:108059389" /translation="MSQESNSGAGGAPGGGGNGAPPPQYIITTPSEVDADEVRSMGDL ELGSPQSQQAQQMQMQSQKFSSSTTKVASSTTRSFSMSSSLQQQKQEKQENSLQQSQQ KIISSSTRSQSLQSSTIVGEATTISSGATQMLTAAQAATLAQQLKAQSSTSIITSSEQ RTSTSTSSSSSTRFVASGAPSSSSGGGGGVGNSGNNSKTRFQSFLQQPEGAHGFLTAH QKHVRQFVRSTSAHSEAAAGGSSGSGRPEKCIRSASTQIDDTTVGGGGGVVDSSSGSL ADSAATGGSMQLSMSKMGLQQSSSILISKSAETIEMKSSSSSAGMRTQLTLSGGFLAP PGSRKITILSPIHAPPGLHDMLKRAQGRSPLSPRISFPGSDSDLFGFDVENGQGARSP LEGGSPSAGLVLQNLPQRRESFLYRSDSDFEMSPKSMSRNSSIASERFKEQEASILVD RSHGEDLIVTPFAQILASLRSVRNNLLSLTNVPASNKRPNQSSSASRSGNPSGAPLSQ GEEAYTRLATDTIEELDWCLDQLETIQTHRSVSDMASLKFKRMLNKELSHFSESSRSG NQISEYICSTFLDKQQEFDLPSLRVEDNPELVAANAAASGQQSAGQYARSRSPRGPPM SQISGVKRPLSHTNSFTGERLPTFGVETPRENELGTLLGELDTWGIQIFSIGEFSVNR PLTSVAYTIFQSRELLTSLMIPPKTFLNFMTTLEDHYVKDNPFHNSLHAADVTQSTNV LLNTPALEGVFTPLEVGGALFAACIHDVDHPGLTNQFLVNSSSELALMYNDESVLENH HLAVAFKLLQNQGCDIFCNMQKKQRQTLRKMVIDIVLSTDMSKHMSLLADLKTMVETK KVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKPLPLYKRWVALLMEEFFLQGDKER ESGMDISPMCDRHNATIEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEENRDYY QSMIPPSPPPSGVDENPQEDRIRFQVTLEESDQENLAELEEGDESGGESTTTGTTGTT AASALGGAGGGGGAGGGVAPRTGGCQNQPQHGGM" misc_feature 1773..2135 /gene="dnc" /note="Phosphodiesterase 4 upstream conserved regions (UCR); Region: PDE4_UCR; pfam18100" /db_xref="CDD:465648" misc_feature 2571..3293 /gene="dnc" /note="3'5'-cyclic nucleotide phosphodiesterase; Region: PDEase_I; pfam00233" /db_xref="CDD:459723" polyA_site 5304 /gene="dnc" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 agttgccagt tgcaaatcag acctctgagc agcagcaaca gcacagcggc agcagcaaca 61 tcacagcggc aacagcaaca tcacagcagc aacatcagca cgtgtgcccc aacagcagag 121 ataaatacat aaaacgccga gaaattcaag agaagcggaa gaaaaaagct aaggccaaaa 181 agcaattaaa acaaattgtg ccgtaagtca ggtcggtggg cttacagccc agttccccgg 241 aaaaaaacca aaaaaaaaac cgaaacaaaa aaaaccaaaa aaacacaaaa aaagaaaaca 301 aaacaaaaca ggaaaccacc gcaggatcta cagggaaaac aggacccacc gccctcaaaa 361 gaaacgcgaa aagccagaga aaaatacaaa agtaagccat gtcccaggag agtaatagtg 421 gtgcaggagg agcaccagga ggaggaggca atggtgcacc accaccgcag tacataataa 481 ccacgcccag cgaagtggat gcggatgagg tgcgctccat gggcgacttg gagctgggct 541 ccccgcaatc ccagcaagcc cagcaaatgc agatgcagag ccagaagttc tcgagctcca 601 ccaccaaggt ggcctcctcc accactcgct ccttttcgat gagcagcagc ctgcagcagc 661 agaagcagga gaagcaggag aacagcctgc agcaatcgca gcagaagatc atctccagtt 721 cgacgcgcag ccagagcctt cagtccagca cgattgtggg cgaggccacc accatttcga 781 gtggcgccac ccagatgctc acagccgccc aggcggccac cttggcccag cagctgaagg 841 cccagagctc cacgtcgata atcacgagca gcgagcagcg gaccagcacg agcacgagca 901 gcagcagcag cactcgattc gtggccagtg gagcaccctc tagctcctcc ggtggaggcg 961 gtggcgttgg taactccggc aacaacagca agacccgctt ccagagtttc ctccagcagc 1021 cggagggagc ccatggcttc cttaccgccc accagaagca tgtgcgccag tttgtgcgct 1081 ccacatcggc ccactcggag gcggccgccg gtggttcctc cggcagcggc aggccggaaa 1141 agtgcatccg cagcgcctcc acgcagatcg atgataccac cgttggcggc ggcggaggag 1201 tggtggattc gtcgtcgggc agcttggcgg acagcgccgc caccggcgga tccatgcagc 1261 tgtcgatgag caaaatgggc ctccagcagt cctcctcgat cctcatctcc aagtcggccg 1321 agaccatcga gatgaagagc agctcctcgt cggccggcat gcgcacccag ttgaccttga 1381 gtggcggctt tctcgctccg cccggcagcc ggaagatcac catcttgagc cccatccacg 1441 cgccgcccgg cctccacgac atgctaaaaa gggcccaggg acgctcgccc ctctcgccca 1501 ggatcagctt ccccggcagc gattcggacc tcttcggttt cgatgtagaa aatggccagg 1561 gcgctcgatc accgctcgag ggcggctctc ccagcgccgg tttggttcta cagaatttgc 1621 cgcagcgtcg cgaatcgttt ctatatcgct ccgattccga ctttgagatg tcgcccaagt 1681 ccatgtctcg aaactcaagc atcgctagcg aaaggtttaa agaacaggaa gcctctatac 1741 tcgttgaccg atcccatggc gaggatctca ttgtgacgcc tttcgcccaa attttagcca 1801 gcttacgttc agtgcgcaac aatttattaa gtctgacaaa tgttccagca tcaaacaagc 1861 ggcccaacca atcctcgtcg gcctcccgat cgggaaatcc ctcgggagcc ccgctgtccc 1921 agggcgagga ggcctacacc cgcctggcca ccgacaccat cgaggagctg gactggtgcc 1981 tcgaccagct ggagaccatc cagacccatc gcagcgtctc cgacatggct tcgctcaagt 2041 tcaaacgcat gctcaacaag gagctgtcac acttcagcga gtccagcaga tcgggaaatc 2101 agatttccga gtacatttgt tccacatttt tggacaagca gcaggagttc gacttgccgt 2161 cgctgcgcgt ggaggataat ccggagctgg tggccgccaa tgccgccgcc agcggccagc 2221 agtccgctgg ccagtacgcc cgctcccgct ccccccgcgg cccgcccatg tcgcagatca 2281 gcggcgtgaa gcggcccctt tcgcacacca acagcttcac cggcgaacgg ctgcccacct 2341 tcggcgtgga gacgcccagg gagaacgagc tgggcaccct gctcggcgaa ctggacacct 2401 ggggcatcca gatattcagc atcggcgagt tcagcgtcaa ccgaccgctc accagtgtgg 2461 catacaccat atttcagagt agagaattac tgaccagtct tatgatacca ccgaaaactt 2521 ttcttaactt tatgactact ctggaggacc actacgtcaa agacaatccg tttcacaatt 2581 cgctgcatgc cgccgacgtg acccagagca ccaatgtgct actcaataca ccggcgctgg 2641 agggcgtatt cacaccgctc gaggtgggcg gggcactgtt cgccgcttgc atccacgatg 2701 ttgatcatcc cggcttaacc aatcagttct tggttaactc aagttccgaa ctagcattaa 2761 tgtacaatga cgaatctgtt ttggaaaatc atcatttagc tgttgccttt aaattattgc 2821 aaaatcaagg atgtgatata ttctgtaata tgcaaaagaa acaacgccaa acattgagga 2881 aaatggttat tgatattgtg ctgtccacgg acatgtccaa gcacatgagt ctgctggccg 2941 acctgaagac aatggtggaa accaagaagg tggccggctc cggagtcctg ctgctggaca 3001 actacaccga tcgcatacag gtgctcgaga atctggtgca ctgcgccgat ctgagcaatc 3061 ccaccaagcc gctgccgctt tacaagcgct gggtggccct gctcatggag gagttcttcc 3121 tgcagggcga caaggagcgc gagtcgggca tggacatcag tcccatgtgc gatcgccaca 3181 acgccaccat cgagaagtcg caggtgggct tcatcgacta tatcgtccac ccgctgtggg 3241 agacctgggc ggacctggtg cacccggacg cccaggacat actcgacacg cttgaagaga 3301 acagagacta ctaccagagc atgataccgc cctcgccgcc gccgtcgggg gtcgatgaga 3361 atccgcagga ggacaggata cgctttcaag taaccctgga ggagtccgac caggagaacc 3421 tcgccgagct ggaggagggc gacgagagtg gcggcgagag caccaccacc ggaacaaccg 3481 gaaccaccgc cgcctccgcg ctgggcgggg ctgggggcgg tggcggtgct ggcgggggcg 3541 tggcacccag gacgggtggc tgccaaaacc aaccgcagca cggtggaatg tgacggagag 3601 tcgtgggaat ttatcgcaaa atacaggaaa aggctcacaa ctttttccta ttacgttagt 3661 gactactatt aacacacaaa aaccaaacaa aaaccaaaaa cgaaaaactc aaaaaaaaac 3721 aaagaaaaac tcttggaaaa atgcaaaaaa aaaatacaaa aaaaaaccaa aaagccaact 3781 aaagaaatat taaacaaatg tttaaagcat acaaagaatc caaaacagca atagcaaaag 3841 taccgtttaa cttataaagc ctagagaaaa acgaaaaagg aaattagaaa tttacttaat 3901 ggaacaccga gattgatgtt gaaaatacac tgaaaaaaag agatcacgag gagatgagct 3961 aactaagaga aatcttacat attgttaaac gtacacacac acactaaatc caagacaaag 4021 caaagataat gagaaacccc attgataagt aatactaaga agataccaaa actaccgccc 4081 ccttccccca attatataga cgatttttgt tgcatgtgta ggcaaatgat ttttgttaaa 4141 ttcatctgaa gtgggacatc aatcggagaa aaaccccctg agccccctaa ccaagtctcc 4201 tcttttaaac cattgactaa agtgaaatat ttaaaaacaa gaaaaacaac cgaacggaag 4261 gaataattaa tacgacttag cttaagagaa gtttttaagt tttgaatgtt ttgcatgccc 4321 gaacagattc attttactcg attgataacg ttagatctaa ctttagaccg attaacgcta 4381 acggcaacac acatatggaa ttttttatga tttagacccc agcgatagaa gcgaaaacaa 4441 aaagaaaaac aaaaactaaa accaaccatg ttaagtgtaa gaacccagtg aattaaacca 4501 aaattgaaag ccacccgagt taagaccatt taattcaaat ctaaatccaa atcccgaacc 4561 ccaaacaaca aagaagaaca gtctacagcc agactgtagt tgtatagtaa tatatatgat 4621 ataaatattt ttttttaata ttatttgtaa ataatttaaa tgttggactc gaatttaaat 4681 caagcggcta gcaaatgttg cagccaaact aaaactaaaa tgaaaacaaa gccaaaaaca 4741 cataaataac ataaataagg aagtaagtgg agagaaaaaa aggaaggtgg aaaagaaagg 4801 aaaaactatt gtacaattag ctaaagaatt tccatttcaa ttttcgattt tcgatttgaa 4861 ttgcaatttg atttgcttcc agaaaacaag agaaagagaa agatgataaa gatatagaaa 4921 aggaaaggag aagagatgag aagaaaagaa attagagaga gataaaccga aaataatgtc 4981 aaacgctgtc ttcgcaaata tttttcgcta tatatttact tatatcatta tttactagtt 5041 actaagctac ttactgagcc acacaattta aaaacgaaag agacaagaca cccggtcgag 5101 aaagagaggg agcatcgatg aatttagtga acaaacatta aacttactgg cagaaagcac 5161 acaatttaca aaccacaaag caaaccacca gaaaagactc ttcaagcaca agcaattttt 5221 agttttccaa atgaaaaatg aaaaaccaaa gcaaagcaaa accaacacac aaaggaaaag 5281 caaaacaaga aaaaacaaaa aaca