PREDICTED: Drosophila takahashii E3 ubiquitin-protein ligase

LOCUS       XM_017144615            1393 bp    mRNA    linear   INV 09-DEC-2024
            MARCHF5 (LOC108059383), mRNA.
ACCESSION   XM_017144615
VERSION     XM_017144615.3
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 9, 2024 this sequence version replaced XM_017144615.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1393
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..1393
                     /gene="LOC108059383"
                     /note="E3 ubiquitin-protein ligase MARCHF5; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 Proteins"
                     /db_xref="GeneID:108059383"
     CDS             126..1301
                     /gene="LOC108059383"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase MARCHF5"
                     /protein_id="XP_017000104.2"
                     /db_xref="GeneID:108059383"
                     /translation="MGSHLEVFYQPGDQAEDFQSQAEDLQLEDAETQRGSGGSNRHAE
                     ERSCWICFAGEEDNRRAKWVQPCRCRGATKWVHQSCLYRWIDEKQRGNHRRSVSCAQC
                     QTEYIIVFPRMNLLAGALEFLDLAVRRTCPYVAAGMFMCCVYWTAITYGAITVIQVLG
                     QKRGLELMENEVFLLVGLPFIPVGLVLSRLVRWEDAVLKAMRSRYNILRKLPFFHWAG
                     EPELGGGSGLSDSSSSLPPLQNSPAMTEPLYISRLFCGAVFLPTVATAMGNVFFASLD
                     DPLQRTLLGGFTYIGVKGLLKIYLRQKLYVRRRRRRIVNYTDENVRIYMGGQIREAPP
                     QGAQNPQNFQNPNARQFAGNDEHYEDSSSAVTTDSEGGDPDREHIQGVLHTADPPLD"
     misc_feature    261..443
                     /gene="LOC108059383"
                     /note="RING-CH finger, H2 subclass (C4HC3-type), found in
                     membrane-associated RING-CH5 (MARCH5); Region:
                     RING_CH-C4HC3_MARCH5; cd16701"
                     /db_xref="CDD:438361"
ORIGIN      
        1 ttcagctcag tcgtttctgt tgtgtttcta gtgtcgtaat agtttcagtc attatatttc
       61 gtaccaaatt cgttgtgtat gttttctttt ccgtcctcga ttactgcaag aaattccagg
      121 atttgatggg atcgcacctg gaggtgttct accagccggg tgatcaggcc gaggatttcc
      181 aatcccaggc cgaagatctc cagctggaag atgcggagac gcagcgcggc agtggtggat
      241 cgaatcgtca cgccgaggag cgctcctgct ggatttgctt cgccggcgag gaggacaacc
      301 ggcgggccaa gtgggtgcag ccttgccgct gccggggggc caccaagtgg gtgcaccaga
      361 gctgcctgta ccggtggatc gacgagaagc agcgcggcaa ccaccggcgc tcggtgagct
      421 gcgcccaatg ccagacggag tacatcatcg tctttccgcg gatgaatctc ctggccggtg
      481 cactggagtt cctggacctg gcggtgcgca ggacgtgtcc ctatgtggcg gccggtatgt
      541 tcatgtgctg tgtctactgg acggccatca cgtatggcgc cattaccgtc atccaggtgc
      601 tgggccagaa acgcggcctg gagctcatgg agaacgaggt ctttctgctg gtgggcctgc
      661 ccttcattcc ggtgggtttg gtcctctcgc gcctcgttcg ctgggaggat gccgtcctga
      721 aggcgatgcg cagccggtac aacatcctgc gcaagctgcc cttcttccac tgggccgggg
      781 aaccggaact ggggggtggg agtggactca gcgacagttc gagcagcctg ccacccctcc
      841 aaaattcgcc ggccatgacc gaacccctct acatctcgcg gctcttctgc ggcgccgtct
      901 tcctgcccac cgtggccacg gcgatgggta atgtgttctt cgccagcctc gacgatcccc
      961 tgcagcgcac cctcctgggt ggatttacgt acatcggggt gaagggtctg ctgaagatct
     1021 atctgcggca gaagctctat gtccgccggc ggcgccgtcg cattgtgaac tatacggatg
     1081 agaatgtgag gatttatatg ggtggccaga ttcgggaggc accgccccag ggtgcccaga
     1141 atccccagaa tttccagaat cctaatgcca ggcaatttgc cgggaacgat gagcactacg
     1201 aggacagctc cagtgcggtc accacggact ccgagggtgg tgaccccgac agggagcaca
     1261 ttcagggcgt actgcacacg gcagatccac cactggatta gtcatatatg tatcattgaa
     1321 aatagattgc aatccgtgaa ccagagaatt gtatacctta accagaggta atataataaa
     1381 ataataaaag cgg