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LOCUS XM_017144328 6367 bp mRNA linear INV 09-DEC-2024 (ovo), transcript variant X3, mRNA. ACCESSION XM_017144328 VERSION XM_017144328.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017144328.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6367 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6367 /gene="ovo" /note="transcriptional regulator ovo; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:108059196" CDS 771..5135 /gene="ovo" /codon_start=1 /product="transcriptional regulator ovo isoform X3" /protein_id="XP_016999817.2" /db_xref="GeneID:108059196" /translation="MPKIFLIKNRLHQQQQRLLESQNLLQHKSQDDERLVPPLSPSGS GSANSPTPTPTPTAQPPPEPQGQGQQVLGQVPDADQQPLSLTRKRFHHRRHYFGQSRH SLDHLHQNANLNQAQNPAELEVERATGQVQNENFAAELLQRLTPNANTTTTVAAQNNI VRPIVNDLVNNSKATTSVLATKDCAIENSPISIPKKDQREEEEEEQRAAAAAAEEEEE QAQKREQAEVEREAEVEERESKEEEDEEDDEVDVGVEAPRPRFYNTGVVLTQAQRKEY PQDPEPRDLSLAQSSPASPPPPPPNPCHSDSDTDTDSDSDGGCKLIVDEKPPLPAIKP LSLRLRSTPPPADQRPSPPPPRDPAPAVRCSVIQRAPQASSRLAGFLLPPLDQLGPEQ QEPIDYHVPKRRSPSVDSDEELNARRLERARQVREARRRSTILAARVLLAQSQRLNPR LVRSLPGILAAAAGHGRNSSSSSGAAGQGFQSSGFGSQNSGSGSSSSSNQNAGSGAGS PGSGAGGGGGMGGGRDGRGNYGPNSPPTGALPPFYESLKSGQQSTASNNTGQNSSHFN GNPANFLQNAAAAAYIMSAGGGGGGGSSGGGGSGGGGAAGGGGGGSSGGGNGNGYINC GGVAGPNNNLDAYGIILKDEPDIEYDEAKIDIGTFAQNIIQATMGSSGQFNASAYEDA IMSDLASSGQCPNGAVDPLQFTATLMLSSQTDHLLEQLSDAVDLSSFLQRSCVDDEES ASPRQDFELVSTPSLTPDSVTPVEQHNANTSQLDALHENLLTQLTHNMARNSSNQQQQ QQHQQQQQQQQHNMQQQHNMQQQHSVQQPPPPSYQHATRGLMMQQQPQHGGYQQQQQA ISSSYQQQQSHHQQQQQQHAAAYQQQHNMYAQQQQQQQQHHQQQQHHFHHQQQQQQQQ PHHSHHHGHGHDNSNMSLPSPTAAAAAAAAAAAAAAAAAHLQRPMSSSSSSGGTNSSN SSGGSSNSPLLDANAAAAAAAALLDTKPLIQSVSNPLDPSNNAQSQQTKQGKQITLMK TTTYTEFVEMVSMDVLVKPEPLVETKPEVTEVTLEEETVVPVAIPPPPPPPAAAATSG RKLRGRAKAVAYGSTMITLISTLKSSAEVPATKTVHRTTLRSLASAAAATAAGLLAPS PTVSVLNESKVLQRRLGLPPDLQLEFVNGGHGIKNPLAVENAHGGHHRIRNMDCIDDL SKHGHHSQQQQQQQQQQGSPQQQQQQQSMQQSVQQQSVQQSLQQQQQQQQQQQHHQHH SNSSASSNASSHGSAEALCMGSTSGGVNEDSSSGNNKFVCRVCMKTFSLQRLLNRHMK CHSDIKRYLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCNLCEKSFTQRCSLESHCQKV HSVQHQYAYKERRAKMYVCEECGHTTCEPEVHYLHLKNNHPFSPALLKFYDKRHFKFT NSQFANNLLGQLPMPVHN" misc_feature 4674..4736 /gene="ovo" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(4689..4691,4695..4697,4701..4703,4707..4712, 4719..4724,4731..4733,4773..4775,4779..4781,4791..4796, 4803..4808,4815..4817,4857..4859,4863..4865,4869..4871, 4875..4880,4887..4892,4902..4904) /gene="ovo" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 4713..4784 /gene="ovo" /note="Zinc-finger double domain; Region: zf-H2C2_2; pfam13465" /db_xref="CDD:463886" misc_feature 4758..4820 /gene="ovo" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 4794..4871 /gene="ovo" /note="Zinc-finger double domain; Region: zf-H2C2_2; pfam13465" /db_xref="CDD:463886" misc_feature 4842..4907 /gene="ovo" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" polyA_site 6367 /gene="ovo" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ccggcgttgt gaatgcacgt gttttcgctt caactcacct gggcgaaatc caaaaaccaa 61 agcaaactat aaaacacaca atatacaata tcttaatacg aaaacactgt gttgtgcatc 121 atacaaaata tgatatactg aaatacatca aaacaaaaag atacaaattt ttttcaagta 181 atttttttac aagtgcgcag aacaaaaaaa aaccaagaac caaaaagtgt ttgagaattc 241 aaaataactg gagaaaaaca tatattttct caacacgaat tttttgacaa attataaaaa 301 aaaaacaacg ttttttcgaa gaagaatttt aaaaactcaa aaaaccctgc tgaaaggcac 361 attttttcca agtgtttcaa ggaaaacaga acatcagaca acagaaaatt aaaaaaggaa 421 attaccaaaa taaaatacaa catttccaat tgactatttt gaacttgaag aacagaaaaa 481 cttgcaaaag acatgaagag ggccaaacaa aagttgactt gagctcggct catgacaaaa 541 tcaaaactga aattaaacaa tttttttttt tgaacgcagt ggacgagcgg cgaacaaaca 601 tacacacaca attggattag tgttttgttt atttcggacc cactgtgact gtccctcgtc 661 caccaattgc aacacaaata aaatcgtcgc gtgtcgccgt cgcgtttcgt ttcgtatcgt 721 ttcaatcgct tatcgttaat cgcaaatcgt caatcatccg ataatccatc atgccgaaga 781 ttttcctgat caaaaatcgc ctgcatcagc agcaacagcg tttgcttgaa tcgcaaaact 841 tgctgcagca caaaagccag gatgacgagc gcctggtgcc gcccctcagt ccgagtggga 901 gtggcagcgc caactcgccc acgcccacgc caacgcccac cgcccaacca ccgccggaac 961 cgcaaggtca ggggcaacag gtgctcggac aggtgcccga tgcggatcaa cagccgctga 1021 gcctgacccg caaaagattc caccaccgtc gccactattt cgggcaatcg cgccacagcc 1081 tcgatcatct ccatcagaat gcgaacctta atcaagcaca aaatcctgcg gaattggaag 1141 tcgagcgcgc cactggccaa gttcaaaatg aaaactttgc ggccgaatta ctgcagcgtt 1201 taaccccaaa cgccaacacc accaccactg tagctgcaca aaataatatt gttaggccaa 1261 tagttaatga tttggttaat aatagcaaag ccaccacctc cgttttagcc acaaaagact 1321 gcgcaattga aaactcccca attagcatac caaaaaaaga tcagcgagaa gaggaagaag 1381 aagagcagcg ggcagcagca gcagcagcag aagaagaaga agagcaggct caaaagagag 1441 agcaagcgga ggtagagaga gaggcggagg tagaagagag agagagcaaa gaggaagagg 1501 acgaggagga cgacgaagtg gatgtgggcg tagaggcgcc acgcccacgc ttctacaata 1561 ccggcgtggt tttaacccag gctcagcgca aggaatatcc gcaggatccc gagccccgtg 1621 acctttcgct cgcccaatcc tcgccagctt ccccgccgcc gccgccgcca aatccctgtc 1681 actccgattc cgataccgat accgattccg attcggatgg cggctgcaag ctaatcgtcg 1741 acgagaagcc cccattgccg gcgatcaagc cgctttccct gcgcctgcgc agcactccgc 1801 cgccagcgga tcagcgtccc agtccgccgc ctccgcgcga cccggcgccc gccgtccgct 1861 gctcggtgat ccagcgggca ccgcaggcca gcagccggct ggccggattc ctcctgccgc 1921 cgctcgatca gctcggtccc gagcagcagg agcccatcga ttaccacgtc ccgaagcggc 1981 ggagtccctc cgtcgactcc gatgaggagc tgaacgcccg ccggctggag agagcacgcc 2041 aggtgcgcga ggcgcgtcgc aggagcacca ttttggccgc tcgcgtcctc ttggcccagt 2101 cgcagaggct caatccgcgc ttggtgcgct cgctgccggg aattctagcc gccgctgcgg 2161 gtcacggacg caatagtagc agctccagcg gtgccgccgg ccagggcttc caatcctccg 2221 gatttggcag ccagaacagc ggcagtggtt cgtctagttc gtccaatcag aacgccggga 2281 gcggtgctgg atcaccggga tcgggggccg gaggaggtgg tggcatgggc ggcggtcgcg 2341 acggccgagg gaactacgga cccaattcac cgcccacggg ggcactgcct ccgttctacg 2401 agagcctcaa gagcggccag cagagcacgg cgagcaataa tacgggtcag aatagctcgc 2461 atttcaacgg gaatccagcg aattttctgc aaaacgcagc agcggctgct tacataatgt 2521 cagcaggagg aggaggtggt ggaggatctt ccggaggagg tggctccgga ggaggaggag 2581 ctgccggcgg aggaggaggc ggctccagtg gtggtggtaa cggcaatggc tacatcaatt 2641 gtggcggcgt tgctggtcca aacaataatc tcgacgccta tggaatcata ctgaaggatg 2701 agccggacat tgagtacgac gaggccaaga tcgacatagg aacctttgcg cagaacatca 2761 tccaggcgac gatgggcagc tcgggtcagt tcaatgccag cgcctatgaa gatgccatca 2821 tgtcggattt ggccagctcc ggtcagtgtc ccaatggcgc cgtcgatccg ctgcagttta 2881 cagcgacttt gatgctgagt tcgcagacgg atcatctgct ggagcagctg tccgatgccg 2941 tggatctcag ctccttcctg cagcgcagct gtgtggacga cgaggagtcc gcgagtccaa 3001 ggcaggactt tgagctggtg tccacgccct cgctgacgcc ggactcggtg acgccggtgg 3061 agcagcacaa tgccaacacc tcgcagttgg atgccctgca cgagaacctc ttgacgcagc 3121 tgacccacaa tatggccagg aacagcagca atcagcagca gcagcagcag catcagcagc 3181 agcaacagca gcagcagcat aatatgcagc agcaacataa tatgcagcag caacatagcg 3241 tgcaacagcc gccaccgccc tcgtatcagc atgccacgcg cggcttgatg atgcaacagc 3301 agccgcagca cggcggctac cagcagcagc agcaggccat cagcagcagc taccagcagc 3361 aacagtcgca ccaccagcag cagcagcagc aacatgccgc tgcctaccag cagcagcaca 3421 atatgtatgc ccagcagcag cagcagcagc agcaacatca ccagcagcaa cagcatcact 3481 tccaccacca gcaacagcag cagcaacagc agccgcatca ctcgcatcat catggccatg 3541 gtcatgacaa cagcaacatg tcgctgccct cgccaactgc ggctgctgcg gcggctgctg 3601 ctgctgctgc ggctgctgca gcggccgctc acctacagcg accgatgagc agcagcagca 3661 gctccggcgg caccaacagc agcaacagca gcggcggcag cagcaatagt ccgctcctag 3721 atgcaaatgc tgccgcggca gcagcggccg ccctgctgga caccaagccg ctcatccaaa 3781 gcgtaagtaa tccccttgat ccgtcgaata atgcccaatc acagcagaca aagcagggga 3841 agcaaatcac cctgatgaag accaccacgt acacggagtt cgtggagatg gtgtcgatgg 3901 atgtgctggt caagccggag cctttggtgg agaccaaacc ggaggtgact gaggtgactt 3961 tggaggagga gacagtggta ccggtggcaa taccaccgcc tccgccgccg ccagcagcag 4021 cagcaacttc gggcagaaag ctgcgcggaa gggccaaggc ggtggcctat ggctccacca 4081 tgatcacgct gatctccacg ctgaaatcct cggcggaggt gccggccacc aagacggtgc 4141 atcgcaccac cttgcgatcg ctggcctcgg cggcggcggc cacggcagcg ggactgctgg 4201 cgccgtcgcc caccgtttcc gttttgaatg agagcaaagt cctgcagcgg cgcttgggcc 4261 tgccgccaga tctgcagctg gagtttgtga acggcggcca tggcattaag aacccgctgg 4321 ccgtggagaa tgcccatggt ggccatcacc gaatacgcaa catggattgc attgatgatc 4381 tcagcaagca tggccaccac tcgcagcagc agcagcaaca gcagcagcag cagggctcgc 4441 cacagcagca gcagcaacag cagagcatgc agcaatcggt gcaacagcag tcggtgcagc 4501 aatccctcca gcagcagcaa cagcaacagc agcagcagca gcaccatcag caccacagca 4561 acagcagcgc cagcagcaat gccagcagtc acggctccgc cgaagccctt tgcatgggct 4621 caaccagcgg cggagttaac gaggactcct cctcgggcaa caacaagttc gtgtgccgcg 4681 tctgcatgaa gaccttctcg ctgcagcgac tgctcaatcg gcacatgaag tgccactcgg 4741 acatcaagcg atatctgtgc acgttctgcg gcaagggatt caacgacacc ttcgacctca 4801 agcggcacac gcgcacccac acgggcgtgc ggccgtacaa gtgcaatctg tgcgagaaga 4861 gcttcacgca gcgctgctct ttggagtcgc actgccagaa ggtgcacagc gttcagcacc 4921 agtacgccta caaggagcgc agggccaaga tgtacgtctg cgaggagtgc ggccacacca 4981 cctgcgaacc ggaggtgcac tatctgcatt tgaagaacaa ccatcccttc tcgccggcgc 5041 tgctcaagtt ctacgacaag cggcacttca agttcaccaa ctcgcagttc gccaacaatc 5101 tgcttggcca gctgcccatg ccggtccata attagtaaat ggatgggatt gaatttagat 5161 ataggaactt aggcaacaac caacattgtg actttgaagt tttttgaaaa ctgaaaactg 5221 cccccccgcg gaggaaacgg aatttttgga gattatgctt attatgtata tttttgccta 5281 gccctaagtt taattagtta tagctgtaga atcacgctac tccactactc actttgctgt 5341 gcaaatctgt ctcacttgaa acttttgagc cttttgttta tagttaatct tgaattttcc 5401 atttaatgca attatttttt tttcggttta ccgcttctta gtcaaaaaat tatcgtagag 5461 ctaagaaatg ttttgaagaa gctttgagca acacacaaaa attatggatt atcaatcgtt 5521 tataggtata ttacaagaaa atatatataa aaaagatata gctgtaagat gttaagagct 5581 aacaaccgaa caagctgcaa acgtttgcat ttatttgtct tcaacaaaag caaaaacaaa 5641 aaacggaata gatcgcgtag aaaaatgagc aaggattaac atatttacac accaccaacg 5701 cataaatatt tattacttaa tcacaaacca cattgcaaag aggcaaaaca ttcgaataaa 5761 ttaggctagg atacataaaa cataaaacaa aacgtaaact aaagctgttc ataaatgaag 5821 tcaaagcccc aacaatatcc aacatgtttt ggaagaatcg ttgcgataag ataattcttt 5881 gaatgtatat cttgcattaa acttagcttt taggcaatac caccaattgt actgatctta 5941 aatgaacaaa cactaagaaa aacatacatt ttatatatat aaaccgatat ccgatggtat 6001 attcgataag ccttagtcct aaggtaaaat tactcttgaa tctggattcg aatttgagtt 6061 tgaatttgat aacaattgag ggaaactatg atttcccatg cgtaacatta aactgcatta 6121 ttatttctgt tttagcttaa cgcttttttt ttcttttaat ttgttgtaag caacaacggg 6181 ttttttgtgc aatcgcttgg tgttggttaa atggaattaa ggatgatgac atgacaaatc 6241 ggatttaaga atcgtacttt aaggtttatg ctgtgggggc tgtgcattgt ggcgccacgc 6301 ccaccgcccg ctgtacagcc cccaaagaag aaggagtaga atacggcgga tatcgaaact 6361 tggcaaa