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LOCUS XM_017144327 6526 bp mRNA linear INV 09-DEC-2024 (ovo), transcript variant X1, mRNA. ACCESSION XM_017144327 VERSION XM_017144327.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017144327.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6526 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6526 /gene="ovo" /note="transcriptional regulator ovo; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:108059196" CDS 771..5294 /gene="ovo" /codon_start=1 /product="transcriptional regulator ovo isoform X1" /protein_id="XP_016999816.2" /db_xref="GeneID:108059196" /translation="MPKIFLIKNRLHQQQQRLLESQNLLQHKSQDDERLVPPLSPSGS GSANSPTPTPTPTAQPPPEPQGQGQQVLGQVPDADQQPLSLTRKRFHHRRHYFGQSRH SLDHLHQNANLNQAQNPAELEVERATGQVQNENFAAELLQRLTPNANTTTTVAAQNNI VRPIVNDLVNNSKATTSVLATKDCAIENSPISIPKKDQREEEEEEQRAAAAAAEEEEE QAQKREQAEVEREAEVEERESKEEEDEEDDEVDVGVEAPRPRFYNTGVVLTQAQRKEY PQDPEPRDLSLAQSSPASPPPPPPNPCHSDSDTDTDSDSDGGCKLIVDEKPPLPAIKP LSLRLRSTPPPADQRPSPPPPRDPAPAVRCSVIQRAPQASSRLAGFLLPPLDQLGPEQ QEPIDYHVPKRRSPSVDSDEELNARRLERARQVREARRRSTILAARVLLAQSQRLNPR LVRSLPGILAAAAGHGRNSSSSSGAAGQGFQSSGFGSQNSGSGSSSSSNQNAGSGAGS PGSGAGGGGGMGGGRDGRGNYGPNSPPTGALPPFYESLKSGQQSTASNNTGQNSSHFN GNPANFLQNAAAAAYIMSAGGGGGGGSSGGGGSGGGGAAGGGGGGSSGGGNGNGYINC GGVAGPNNNLDGNNLLNFASVSNYNDSNSKFHNHHHHHHHHHNNNNNGGQPSMMGHPF YGGNPSAYGIILKDEPDIEYDEAKIDIGTFAQNIIQATMGSSGQFNASAYEDAIMSDL ASSGQCPNGAVDPLQFTATLMLSSQTDHLLEQLSDAVDLSSFLQRSCVDDEESASPRQ DFELVSTPSLTPDSVTPVEQHNANTSQLDALHENLLTQLTHNMARNSSNQQQQQQHQQ QQQQQQHNMQQQHNMQQQHSVQQPPPPSYQHATRGLMMQQQPQHGGYQQQQQAISSSY QQQQSHHQQQQQQHAAAYQQQHNMYAQQQQQQQQHHQQQQHHFHHQQQQQQQQPHHSH HHGHGHDNSNMSLPSPTAAAAAAAAAAAAAAAAAHLQRPMSSSSSSGGTNSSNSSGGS SNSPLLDANAAAAAAAALLDTKPLIQSVSNPLDPSNNAQSQQTKQGKQITLMKTTTYT EFVEMVSMDVLVKPEPLVETKPEVTEVTLEEETVVPVAIPPPPPPPAAAATSGRKLRG RAKAVAYGSTMITLISTLKSSAEVPATKTVHRTTLRSLASAAAATAAGLLAPSPTVSV LNESKVLQRRLGLPPDLQLEFVNGGHGIKNPLAVENAHGGHHRIRNMDCIDDLSKHGH HSQQQQQQQQQQGSPQQQQQQQSMQQSVQQQSVQQSLQQQQQQQQQQQHHQHHSNSSA SSNASSHGSAEALCMGSTSGGVNEDSSSGNNKFVCRVCMKTFSLQRLLNRHMKCHSDI KRYLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCNLCEKSFTQRCSLESHCQKVHSVQH QYAYKERRAKMYVCEECGHTTCEPEVHYLHLKNNHPFSPALLKFYDKRHFKFTNSQFA NNLLGQLPMPVHN" misc_feature 4833..4895 /gene="ovo" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(4848..4850,4854..4856,4860..4862,4866..4871, 4878..4883,4890..4892,4932..4934,4938..4940,4950..4955, 4962..4967,4974..4976,5016..5018,5022..5024,5028..5030, 5034..5039,5046..5051,5061..5063) /gene="ovo" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 4872..4943 /gene="ovo" /note="Zinc-finger double domain; Region: zf-H2C2_2; pfam13465" /db_xref="CDD:463886" misc_feature 4917..4979 /gene="ovo" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 4953..5030 /gene="ovo" /note="Zinc-finger double domain; Region: zf-H2C2_2; pfam13465" /db_xref="CDD:463886" misc_feature 5001..5066 /gene="ovo" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" polyA_site 6526 /gene="ovo" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ccggcgttgt gaatgcacgt gttttcgctt caactcacct gggcgaaatc caaaaaccaa 61 agcaaactat aaaacacaca atatacaata tcttaatacg aaaacactgt gttgtgcatc 121 atacaaaata tgatatactg aaatacatca aaacaaaaag atacaaattt ttttcaagta 181 atttttttac aagtgcgcag aacaaaaaaa aaccaagaac caaaaagtgt ttgagaattc 241 aaaataactg gagaaaaaca tatattttct caacacgaat tttttgacaa attataaaaa 301 aaaaacaacg ttttttcgaa gaagaatttt aaaaactcaa aaaaccctgc tgaaaggcac 361 attttttcca agtgtttcaa ggaaaacaga acatcagaca acagaaaatt aaaaaaggaa 421 attaccaaaa taaaatacaa catttccaat tgactatttt gaacttgaag aacagaaaaa 481 cttgcaaaag acatgaagag ggccaaacaa aagttgactt gagctcggct catgacaaaa 541 tcaaaactga aattaaacaa tttttttttt tgaacgcagt ggacgagcgg cgaacaaaca 601 tacacacaca attggattag tgttttgttt atttcggacc cactgtgact gtccctcgtc 661 caccaattgc aacacaaata aaatcgtcgc gtgtcgccgt cgcgtttcgt ttcgtatcgt 721 ttcaatcgct tatcgttaat cgcaaatcgt caatcatccg ataatccatc atgccgaaga 781 ttttcctgat caaaaatcgc ctgcatcagc agcaacagcg tttgcttgaa tcgcaaaact 841 tgctgcagca caaaagccag gatgacgagc gcctggtgcc gcccctcagt ccgagtggga 901 gtggcagcgc caactcgccc acgcccacgc caacgcccac cgcccaacca ccgccggaac 961 cgcaaggtca ggggcaacag gtgctcggac aggtgcccga tgcggatcaa cagccgctga 1021 gcctgacccg caaaagattc caccaccgtc gccactattt cgggcaatcg cgccacagcc 1081 tcgatcatct ccatcagaat gcgaacctta atcaagcaca aaatcctgcg gaattggaag 1141 tcgagcgcgc cactggccaa gttcaaaatg aaaactttgc ggccgaatta ctgcagcgtt 1201 taaccccaaa cgccaacacc accaccactg tagctgcaca aaataatatt gttaggccaa 1261 tagttaatga tttggttaat aatagcaaag ccaccacctc cgttttagcc acaaaagact 1321 gcgcaattga aaactcccca attagcatac caaaaaaaga tcagcgagaa gaggaagaag 1381 aagagcagcg ggcagcagca gcagcagcag aagaagaaga agagcaggct caaaagagag 1441 agcaagcgga ggtagagaga gaggcggagg tagaagagag agagagcaaa gaggaagagg 1501 acgaggagga cgacgaagtg gatgtgggcg tagaggcgcc acgcccacgc ttctacaata 1561 ccggcgtggt tttaacccag gctcagcgca aggaatatcc gcaggatccc gagccccgtg 1621 acctttcgct cgcccaatcc tcgccagctt ccccgccgcc gccgccgcca aatccctgtc 1681 actccgattc cgataccgat accgattccg attcggatgg cggctgcaag ctaatcgtcg 1741 acgagaagcc cccattgccg gcgatcaagc cgctttccct gcgcctgcgc agcactccgc 1801 cgccagcgga tcagcgtccc agtccgccgc ctccgcgcga cccggcgccc gccgtccgct 1861 gctcggtgat ccagcgggca ccgcaggcca gcagccggct ggccggattc ctcctgccgc 1921 cgctcgatca gctcggtccc gagcagcagg agcccatcga ttaccacgtc ccgaagcggc 1981 ggagtccctc cgtcgactcc gatgaggagc tgaacgcccg ccggctggag agagcacgcc 2041 aggtgcgcga ggcgcgtcgc aggagcacca ttttggccgc tcgcgtcctc ttggcccagt 2101 cgcagaggct caatccgcgc ttggtgcgct cgctgccggg aattctagcc gccgctgcgg 2161 gtcacggacg caatagtagc agctccagcg gtgccgccgg ccagggcttc caatcctccg 2221 gatttggcag ccagaacagc ggcagtggtt cgtctagttc gtccaatcag aacgccggga 2281 gcggtgctgg atcaccggga tcgggggccg gaggaggtgg tggcatgggc ggcggtcgcg 2341 acggccgagg gaactacgga cccaattcac cgcccacggg ggcactgcct ccgttctacg 2401 agagcctcaa gagcggccag cagagcacgg cgagcaataa tacgggtcag aatagctcgc 2461 atttcaacgg gaatccagcg aattttctgc aaaacgcagc agcggctgct tacataatgt 2521 cagcaggagg aggaggtggt ggaggatctt ccggaggagg tggctccgga ggaggaggag 2581 ctgccggcgg aggaggaggc ggctccagtg gtggtggtaa cggcaatggc tacatcaatt 2641 gtggcggcgt tgctggtcca aacaataatc tcgacggtaa taacctattg aacttcgcca 2701 gtgtttctaa ctataacgac tccaattcca aattccataa tcaccatcat catcatcatc 2761 atcatcacaa caacaataat aatggtggtc aaccatccat gatgggtcat cccttttacg 2821 gcggcaatcc ctcagcctat ggaatcatac tgaaggatga gccggacatt gagtacgacg 2881 aggccaagat cgacatagga acctttgcgc agaacatcat ccaggcgacg atgggcagct 2941 cgggtcagtt caatgccagc gcctatgaag atgccatcat gtcggatttg gccagctccg 3001 gtcagtgtcc caatggcgcc gtcgatccgc tgcagtttac agcgactttg atgctgagtt 3061 cgcagacgga tcatctgctg gagcagctgt ccgatgccgt ggatctcagc tccttcctgc 3121 agcgcagctg tgtggacgac gaggagtccg cgagtccaag gcaggacttt gagctggtgt 3181 ccacgccctc gctgacgccg gactcggtga cgccggtgga gcagcacaat gccaacacct 3241 cgcagttgga tgccctgcac gagaacctct tgacgcagct gacccacaat atggccagga 3301 acagcagcaa tcagcagcag cagcagcagc atcagcagca gcaacagcag cagcagcata 3361 atatgcagca gcaacataat atgcagcagc aacatagcgt gcaacagccg ccaccgccct 3421 cgtatcagca tgccacgcgc ggcttgatga tgcaacagca gccgcagcac ggcggctacc 3481 agcagcagca gcaggccatc agcagcagct accagcagca acagtcgcac caccagcagc 3541 agcagcagca acatgccgct gcctaccagc agcagcacaa tatgtatgcc cagcagcagc 3601 agcagcagca gcaacatcac cagcagcaac agcatcactt ccaccaccag caacagcagc 3661 agcaacagca gccgcatcac tcgcatcatc atggccatgg tcatgacaac agcaacatgt 3721 cgctgccctc gccaactgcg gctgctgcgg cggctgctgc tgctgctgcg gctgctgcag 3781 cggccgctca cctacagcga ccgatgagca gcagcagcag ctccggcggc accaacagca 3841 gcaacagcag cggcggcagc agcaatagtc cgctcctaga tgcaaatgct gccgcggcag 3901 cagcggccgc cctgctggac accaagccgc tcatccaaag cgtaagtaat ccccttgatc 3961 cgtcgaataa tgcccaatca cagcagacaa agcaggggaa gcaaatcacc ctgatgaaga 4021 ccaccacgta cacggagttc gtggagatgg tgtcgatgga tgtgctggtc aagccggagc 4081 ctttggtgga gaccaaaccg gaggtgactg aggtgacttt ggaggaggag acagtggtac 4141 cggtggcaat accaccgcct ccgccgccgc cagcagcagc agcaacttcg ggcagaaagc 4201 tgcgcggaag ggccaaggcg gtggcctatg gctccaccat gatcacgctg atctccacgc 4261 tgaaatcctc ggcggaggtg ccggccacca agacggtgca tcgcaccacc ttgcgatcgc 4321 tggcctcggc ggcggcggcc acggcagcgg gactgctggc gccgtcgccc accgtttccg 4381 ttttgaatga gagcaaagtc ctgcagcggc gcttgggcct gccgccagat ctgcagctgg 4441 agtttgtgaa cggcggccat ggcattaaga acccgctggc cgtggagaat gcccatggtg 4501 gccatcaccg aatacgcaac atggattgca ttgatgatct cagcaagcat ggccaccact 4561 cgcagcagca gcagcaacag cagcagcagc agggctcgcc acagcagcag cagcaacagc 4621 agagcatgca gcaatcggtg caacagcagt cggtgcagca atccctccag cagcagcaac 4681 agcaacagca gcagcagcag caccatcagc accacagcaa cagcagcgcc agcagcaatg 4741 ccagcagtca cggctccgcc gaagcccttt gcatgggctc aaccagcggc ggagttaacg 4801 aggactcctc ctcgggcaac aacaagttcg tgtgccgcgt ctgcatgaag accttctcgc 4861 tgcagcgact gctcaatcgg cacatgaagt gccactcgga catcaagcga tatctgtgca 4921 cgttctgcgg caagggattc aacgacacct tcgacctcaa gcggcacacg cgcacccaca 4981 cgggcgtgcg gccgtacaag tgcaatctgt gcgagaagag cttcacgcag cgctgctctt 5041 tggagtcgca ctgccagaag gtgcacagcg ttcagcacca gtacgcctac aaggagcgca 5101 gggccaagat gtacgtctgc gaggagtgcg gccacaccac ctgcgaaccg gaggtgcact 5161 atctgcattt gaagaacaac catcccttct cgccggcgct gctcaagttc tacgacaagc 5221 ggcacttcaa gttcaccaac tcgcagttcg ccaacaatct gcttggccag ctgcccatgc 5281 cggtccataa ttagtaaatg gatgggattg aatttagata taggaactta ggcaacaacc 5341 aacattgtga ctttgaagtt ttttgaaaac tgaaaactgc ccccccgcgg aggaaacgga 5401 atttttggag attatgctta ttatgtatat ttttgcctag ccctaagttt aattagttat 5461 agctgtagaa tcacgctact ccactactca ctttgctgtg caaatctgtc tcacttgaaa 5521 cttttgagcc ttttgtttat agttaatctt gaattttcca tttaatgcaa ttattttttt 5581 ttcggtttac cgcttcttag tcaaaaaatt atcgtagagc taagaaatgt tttgaagaag 5641 ctttgagcaa cacacaaaaa ttatggatta tcaatcgttt ataggtatat tacaagaaaa 5701 tatatataaa aaagatatag ctgtaagatg ttaagagcta acaaccgaac aagctgcaaa 5761 cgtttgcatt tatttgtctt caacaaaagc aaaaacaaaa aacggaatag atcgcgtaga 5821 aaaatgagca aggattaaca tatttacaca ccaccaacgc ataaatattt attacttaat 5881 cacaaaccac attgcaaaga ggcaaaacat tcgaataaat taggctagga tacataaaac 5941 ataaaacaaa acgtaaacta aagctgttca taaatgaagt caaagcccca acaatatcca 6001 acatgttttg gaagaatcgt tgcgataaga taattctttg aatgtatatc ttgcattaaa 6061 cttagctttt aggcaatacc accaattgta ctgatcttaa atgaacaaac actaagaaaa 6121 acatacattt tatatatata aaccgatatc cgatggtata ttcgataagc cttagtccta 6181 aggtaaaatt actcttgaat ctggattcga atttgagttt gaatttgata acaattgagg 6241 gaaactatga tttcccatgc gtaacattaa actgcattat tatttctgtt ttagcttaac 6301 gctttttttt tcttttaatt tgttgtaagc aacaacgggt tttttgtgca atcgcttggt 6361 gttggttaaa tggaattaag gatgatgaca tgacaaatcg gatttaagaa tcgtacttta 6421 aggtttatgc tgtgggggct gtgcattgtg gcgccacgcc caccgcccgc tgtacagccc 6481 ccaaagaaga aggagtagaa tacggcggat atcgaaactt ggcaaa