PREDICTED: Drosophila takahashii LSM12 homolog a (Lsm12a), mRNA.

LOCUS       XM_017144229            1381 bp    mRNA    linear   INV 09-DEC-2024
ACCESSION   XM_017144229
VERSION     XM_017144229.3
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 9, 2024 this sequence version replaced XM_017144229.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1381
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..1381
                     /gene="Lsm12a"
                     /note="LSM12 homolog a; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 Proteins"
                     /db_xref="GeneID:108059134"
     CDS             654..1307
                     /gene="Lsm12a"
                     /codon_start=1
                     /product="LSM12 homolog A"
                     /protein_id="XP_016999718.1"
                     /db_xref="GeneID:108059134"
                     /translation="MAAAAASAVNAVNDCFSIGSTVVCTTCFNEEVEGEVLAFDHNTK
                     MLILKCRSKSTEELSDIYAMNLSLCSNVQVVKECNGNFDDPQKLNLEQVKMRLRKTVE
                     RRQDYLKSKNADVSPEAQELYRAIAKQYGYNEVSWQGLNIQILNEVTISPPYRVDNVV
                     SSSNNETSCNYIKRIIKQFFNTRPSPVPESGAAASTSSPSVSPTSSSLASGSPVPAN"
     misc_feature    693..872
                     /gene="Lsm12a"
                     /note="Like-Sm protein 12, N-terminal domain; Region:
                     LSm12_N; cd01735"
                     /db_xref="CDD:212482"
     misc_feature    order(717..737,741..779,786..800)
                     /gene="Lsm12a"
                     /note="Sm1 motif; other site"
                     /db_xref="CDD:212482"
     misc_feature    order(771..773,777..779,846..848)
                     /gene="Lsm12a"
                     /note="putative RNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:212482"
     misc_feature    834..869
                     /gene="Lsm12a"
                     /note="Sm2 motif; other site"
                     /db_xref="CDD:212482"
     misc_feature    903..1178
                     /gene="Lsm12a"
                     /note="Anticodon-binding domain; Region: AD; smart00995"
                     /db_xref="CDD:214962"
     polyA_site      1381
                     /gene="Lsm12a"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 atatacattc aaattaaaag ttccgttaaa taactggtga aaattctcat ccctagcgtt
       61 gccagacgcc gcgaatcgat gactatcgaa cctatcgctg cgcggcatgt gcaacactgc
      121 gtttttctgc tgcccccttt tggctgttgt ttcgtgtgtt gaccaataaa tttttcgcat
      181 attttcccaa cttttcaatt accgaaccgc aagaggcgcc aacgcagacc gtcgcaggcc
      241 agctgaccga gtaattagcg agtttttggc caagtcaact ggatcagtcg caggagcagg
      301 agcaggatct cgaccacaga tcgccaggaa tcgacatttg cattgcagtg gagcggtgaa
      361 cagttcaagt gaaagcgaga gagcgacatc gagatagaca gacggcgcga gagagagagc
      421 gagcgagaga gcaagtgaaa tcctttccag aaatcgcgaa tccgaatccg aatccctggc
      481 ccagcaactt gagacatcgt ttgtttgtgc aacgttgtgt aaacaagcgg aacatcggaa
      541 atccagatcg gcatcccgaa aacacacaca cacacatcta catctatagc cacatatcca
      601 cacagattgt gggtgcactt ttccagttgg ccaatcttat ccagcaatta aaaatggccg
      661 ctgccgctgc gagcgcagtg aatgcagtga acgactgctt cagcatcgga tccacagtcg
      721 tctgtacgac ctgtttcaac gaggaggtgg agggcgaggt gctggccttc gatcacaaca
      781 caaagatgct tatcctgaaa tgccgatcca agtccacgga ggagctgagt gatatctacg
      841 cgatgaacct ctcgctgtgc agcaacgtgc aggtggtcaa ggagtgcaat ggcaactttg
      901 acgatccgca aaagctcaac ctggaacagg tgaaaatgcg cctgcgaaaa acagtagagc
      961 gaagacaaga ctacttgaag tccaagaacg cagatgtcag tccagaggca caagagcttt
     1021 atagagcgat agccaaacaa tacgggtaca atgaagtctc ctggcaagga cttaacatac
     1081 agatcctcaa cgaagtcacc atctcgccgc cgtaccgagt ggacaacgtg gtgtccagct
     1141 cgaacaacga aacttcgtgc aactacatca agcgcatcat caaacagttc ttcaatacga
     1201 ggccatcgcc ggttccagaa agcggagctg ctgccagcac ctcgtcacca tcggtgtctc
     1261 ccacgtcctc atctcttgca tctggatcgc cggttcccgc aaactaataa taaagagaaa
     1321 acaaaaaata cacaaacaaa acaacacaaa aacaaaaaac agaaatgtgc ttcaaaaagg
     1381 a