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LOCUS XM_017144219 2384 bp mRNA linear INV 09-DEC-2024 rngo (rngo), transcript variant X2, mRNA. ACCESSION XM_017144219 VERSION XM_017144219.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017144219.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2384 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2384 /gene="rngo" /note="DNA damage inducible 1 homolog rngo; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108059127" CDS 347..1747 /gene="rngo" /codon_start=1 /product="protein DDI1 homolog 2 isoform X2" /protein_id="XP_016999708.1" /db_xref="GeneID:108059127" /translation="MKITVTTSDDKVFCLDVAQDLELENLKALCAMEIGAEVAHIVLI FNGRELSSDKQTLQQCGVGDGDFIMLERRRSANRSGGANPAISTLDFSSIAVPGTSSG GSPPSRSAQQQLGAQLQQQQQFNNLTDIPMTDEFNVNFDDDPATVRQMFLSSPETLSL LRQYNPRLAEAIDSGDQETFARLLREHISERKRRNEHRMRMLNADPFDEETQRLIAEE IKQKNIQDNMAAAIEYNPEIFGTVTMLYINCKVNGYPVKAFVDSGAQTTIMSKDCAER CHVNRLIDTRWNGVAKGVGTQPILGRIHMVQLQIENDHLTSSFTVLGQQPMDMLLGLD MLKRHQCLIDLQRNLLIIGTTGTTTPFLPESELPVSARLTGNSEESMEQEAIANAIEQ SKRESGGGLSGAGGGPNTIQPLDRFTEQDVTDLMALGYPRSDVLTVLRLCGGNKQAAS SVLLNRNAAASGAELS" misc_feature 347..562 /gene="rngo" /note="ubiquitin-like (Ubl) domain found in the eukaryotic Ddi1 family; Region: Ubl_Ddi1_like; cd01796" /db_xref="CDD:340494" misc_feature 1031..1390 /gene="rngo" /note="retropepsin-like domain of DNA damage inducible protein; Region: RP_DDI; cd05479" /db_xref="CDD:133146" misc_feature 1127..1135 /gene="rngo" /note="catalytic motif [active]" /db_xref="CDD:133146" misc_feature 1127..1129 /gene="rngo" /note="Catalytic residue [active]" /db_xref="CDD:133146" misc_feature 1601..1708 /gene="rngo" /note="UBA domain-like superfamily; Region: UBA_like_SF; cl21463" /db_xref="CDD:473871" polyA_site 2384 /gene="rngo" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cacattaaat gagaaagttt caagagcctc tccaaattat ctgtaacttc ccgtttcgga 61 gcaccgagcc caaaaagaaa tatgaattga ccttagccac ccccgcaaac atcgataggc 121 agagtaagct aagagtaccg ataacgcgcc gcttgcaacc ctgtcgtgtg gaggcggcgt 181 tttcgttgtt gtgtcaaaac aataagcgac cagcagaata tcagcacacc catcggccag 241 gcgaagataa agaacggtta gcagagatta gagacccacc accacccaca gagccgatcc 301 cacaaagaga tcaccatcca ccccccggag aacagcggca gcggcaatga aaatcacagt 361 gaccaccagc gatgacaagg tcttctgctt ggacgtggcc caggatctgg agctggagaa 421 tctcaaggcc ctctgcgcga tggagatcgg tgccgaggtg gcccacatag tgctcatctt 481 caacggacgc gagctctcca gcgacaaaca gacgctgcag cagtgcggcg tcggtgatgg 541 cgacttcatc atgctggaac gacgcaggag cgccaatcgg tcaggtggtg cgaacccggc 601 gatcagcacg ctggacttca gcagcatcgc agtgccgggc acgagttcgg gcggcagtcc 661 gccctcgagg agcgcccagc agcagctggg agcgcagctg cagcagcagc agcagttcaa 721 caacctcaca gacatcccca tgaccgacga gttcaacgtg aacttcgacg acgacccggc 781 gacagtgcgt cagatgttcc tgtccagtcc cgagacgctg tcgctgctcc ggcagtacaa 841 tccccgtctg gcggaggcca tcgattccgg cgaccaggag accttcgccc gcctgctccg 901 cgagcacatt tcggagcgaa agcgacgcaa cgagcaccgc atgcgcatgc tgaacgccga 961 tcccttcgac gaggagacgc aacggctgat tgccgaggag atcaagcaga agaacatcca 1021 ggacaacatg gcggcggcca ttgagtacaa tccggagatc ttcggcacgg tgaccatgct 1081 ctacatcaac tgcaaggtga atggctatcc ggtgaaggcc ttcgtggact cgggcgccca 1141 gacgacgatc atgagcaagg actgcgccga gcggtgccac gtcaaccggc tgatagacac 1201 gcgctggaac ggagtggcca agggcgtggg cacacagccc attctgggca ggattcacat 1261 ggtgcagctg cagatcgaga acgatcatct aacgtccagc ttcacggtgc tgggccagca 1321 gccgatggac atgttgctcg gcctggacat gttgaagcga catcagtgcc tcattgactt 1381 gcagcggaat ctgctgatta tcggcaccac cggcacaacg acgccgtttc tgccggagag 1441 cgagctgccg gtcagcgccc ggctcacagg gaactcggag gaatcgatgg agcaggaggc 1501 cattgccaat gccatcgagc agagcaagag ggaaagtggc ggcggcttaa gtggagctgg 1561 cggcggaccc aataccattc agccgctgga ccgattcacc gagcaggacg tcaccgatct 1621 catggccctc ggctatccgc gcagcgatgt gctcaccgtg ctgcggctgt gcggcggcaa 1681 caagcaggcc gccagctccg tgctgctcaa ccgcaatgca gccgcctcgg gcgcagagct 1741 cagctgaacg cggctagacg aggatcccta gtactcgagc agaactcccc acagccagaa 1801 accggattgc aataggatga tgatgacgaa atactccgag caataccaaa aacttagcca 1861 cgccacatct aaagtcaagt aaatgatcag ttagagggta aaacacacac acagaacaga 1921 aacaacaaat aagcaatgaa aaccgaaacg aaaacctttc taatttagtg aaatttttat 1981 aaactgaagc cactttttta tacgaatcgt ttgttacgat gtacaatatc taatttttaa 2041 aacagagcca gggttggttt tttctagaga atattgagtg gaggatcgag taggcgattt 2101 aatctattat taactaagcg aaaaggaagg aaagtaattg gacaaactgg acggtgatgg 2161 aaccaagccg catcaacgaa aacattaact gtattgcaag agaaatacaa gaaaaaacat 2221 aaacaaaaaa cggaattaag tacgcctgac tattaaaata tattacaatt atacacattt 2281 aaaaacattt atacacaatt tgaactagta ttaaggctct gtcaagctaa actgaattgg 2341 gtcaataaaa ggtcgagagt attgttttgg atttgaaaag gaaa