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LOCUS XM_017144208 5253 bp mRNA linear INV 09-DEC-2024 (Usp7), transcript variant X2, mRNA. ACCESSION XM_017144208 VERSION XM_017144208.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017144208.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5253 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5253 /gene="Usp7" /note="Ubiquitin-specific protease 7; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108059118" CDS 677..4090 /gene="Usp7" /codon_start=1 /product="ubiquitin carboxyl-terminal hydrolase 7" /protein_id="XP_016999697.2" /db_xref="GeneID:108059118" /translation="MEIETDQSIEAMDTQDTQEVEILTSDLQQQQQQQQLQTAQQNSP PQLPKFKNLIQPQLHAVGAVTQLPSENGNVPPQQLLADSSSTSFGQEAEAMGMDEESK EDQFRSETTFSFTVENVGQLKSQRLSPPVYVRMLPWKIMVIPNDRALGFFLQCNGEND SPTWSCNAIAELRLKCHKPEAQPFTRARIKHLFYSKENDYGYSNFITWQELQDAEKSY VHNNSITLEVHVIADAPHGVLWDSKKHTGYVGLKNQGATCYMNSLLQTLYFTNSLRLS VYRIPTEADDSTKSVGLSLQRVFHELQFGDRPVGTKKLTKSFGWETLDSFMQHDVQEF LRVLLDKLESKMKGTTLEGTIPGLFEGKMSSYIKCKNVDYNSTRYETFYDIQLNIKDK KNIYESFQDYVASETLEGDNKYDAGVHGLQEASKGVIFTSFPPVLHLHLMRFQYDPIT DSSIKYNDRFEFYEQINLDRYLAESEKTSADYVLHAVLVHSGDNHGGHYVVFINPKAD GRWFKFDDDVVSSCRKQEAIEQNYGGMDDEISFHAKCSNAYMLVYIRQSELERVLGDI PENEISSDLVERLDLEKRIEMARRKERSEANLYVSVHVILEEYFEDQHKRRLFDLEKA HPRIFRIKQNQTVDELVDMFVKGFGVTRDRMRIWNMCTAQTQKFLHFDFEAEASRTIE QIPTSQKPWVIWLELAWPNVPGPLPSFNPKTEVLLFLKYYDARNKRLNYIGCTQQPHS RRLSDLVPEVNRKLGFDPETELTIYDEYADKKLVNLGEPIESVLFIPQDHLQGHILIF ERESVDAKLDLPTVEDYFLDLVYRIEIIFSDKCNPNEPDFTLELSNRYNYEQLTNAVA ERLNTDPQKLQFFMCINNYKETAGNAVPYTFKGTIKDLVSYTKQSTPKRIFYQRLSLS IHELDNKKQFKCVWVSGDLKDEKELVLYPNKNDTVKGLLEEAAKKITFAENSRRKLRL MKVSNHKIVAVCKDDIPLDTLLKTSESITTTQGAQKTYRIEEVPAEEMQLAENEFLIP VAHFSKELYNSFGVPFLTKARQGEPYGALKQRIQRRLNVPDKEWENYKFSVITMGHNS DVNDNTPVDLEVYRSWTTGQLPFFGLDHINKSRKRSSLNFSEKAIKIYN" misc_feature 1001..4057 /gene="Usp7" /note="Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly...; Region: Peptidase_C19; cl02553" /db_xref="CDD:470612" misc_feature order(1433..1435,1448..1450,2168..2170,2222..2224) /gene="Usp7" /note="active site" /db_xref="CDD:239124" polyA_site 5253 /gene="Usp7" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ttgacagctg cacgggctgc tgcatgtgta tgtgtgtgtg aaaatattaa ttgatacctg 61 gcgacgatgc agtgccgtgt gaaatacgtc agagctgttt gtttttaaat tcacacgatt 121 taagatctga tttaacaaaa tttgtgtttt cggcatacac gattgctggg ctagccaaaa 181 ggcgacggga aacgcacaca ccgacagctt aaaagcggac gaaaaacgca cacacccata 241 caaatgccat aaattgaagt gtatttgtaa tattgtattg ttggaaagaa agcaagcagc 301 atacgcatac cgcaaaaaaa tacgaagagg aggaaaataa gtttttgcca gagcttcagc 361 ttcagtttca gttttagttc ggtacaacgg cacggttttc gatttaaacg ccctcgcctt 421 gccgccgccc gcccaccagc accagtatcc tccacccagc gcccaccccc gatttttgaa 481 acgggagcgg agagcgagcg ggccgaaaat atatttattt atatttattg acagcaagca 541 cggttagcaa gaatttgttt tccagcccag cgttgcaagc gagagagagc gatagtggga 601 aggaaggaag gaaggaaaga gagaggattt ccaatttccc acttgccatt tcagcaccat 661 tcaagtgccg agtaaaatgg aaatagaaac agaccagtct atcgaagcca tggacaccca 721 ggacacccaa gaggttgaga tcctcaccag tgacctccag cagcagcagc agcagcagca 781 actacagaca gcgcagcaga attcgccgcc acagctgccc aaattcaaga atcttatcca 841 gccacaactg cacgccgtcg gcgcagtcac ccagttgccc agcgagaacg gcaatgtgcc 901 gccccagcag ctgctggccg acagcagctc cacatcgttt ggccaggagg ccgaggccat 961 gggcatggac gaggagtcca aggaggatca gttccgctcg gagaccacct tctccttcac 1021 cgtcgagaat gtgggccaac tgaagtcgca gaggctatcg ccgcccgtct atgtgcgcat 1081 gctgccctgg aagatcatgg tcataccgaa tgaccgggcg ctgggcttct tcctgcagtg 1141 caacggggag aacgactcgc ccacctggtc gtgcaatgcc attgccgagc tgcggttgaa 1201 gtgccacaag ccggaggcac agcccttcac ccgggcccgc atcaagcatc tgttctactc 1261 gaaggagaac gactacggct actcgaactt catcacctgg caggagctgc aggatgccga 1321 gaagagctat gtgcataata atagcatcac cctggaggtc catgtcattg ccgatgcccc 1381 gcacggcgtt ttgtgggact cgaagaagca taccggctat gtgggtctga agaatcaggg 1441 cgccacctgc tacatgaact ccctgctgca gacactgtac ttcaccaact ccctgcggct 1501 gtccgtctat cgcataccca cggaggcgga tgatagcacc aagtcggtgg gtctgtcgct 1561 gcagcgggtc ttccacgaac tgcagttcgg cgaccgtccc gtcggcacca agaagctaac 1621 caagtccttt ggctgggaga cgctcgactc gttcatgcag cacgacgtcc aggagtttct 1681 gcgcgtgctc ctggacaagc tggagtcgaa gatgaagggc accacgttgg agggcaccat 1741 tccggggctg ttcgagggca agatgtcgtc gtatatcaag tgcaagaacg tcgactacaa 1801 cagcacgcgc tacgagacgt tctacgacat tcagctgaat atcaaggaca agaagaacat 1861 ctacgagtcc ttccaggatt acgtggcctc cgagaccctg gagggcgaca acaagtacga 1921 tgctggtgtg cacggccttc aggaggccag caagggcgtc atcttcacat cattcccgcc 1981 cgttctgcat ctccatctga tgcgtttcca gtacgatccc atcacggaca gctcgatcaa 2041 gtacaacgat cgcttcgagt tctacgagca gatcaatctg gatcgctatc tggccgagag 2101 cgagaaaacg tcggcggact acgtcctgca cgcggtgctg gttcactccg gcgacaacca 2161 cggcggccac tacgtggtct tcatcaatcc caaggccgac ggccgttggt tcaagttcga 2221 cgacgacgtc gtctccagtt gccgcaagca ggaggccatc gaacagaact acggcggcat 2281 ggacgacgag atctcgttcc atgccaagtg cagcaacgcc tacatgctgg tctacatccg 2341 ccagtcggag ctggagcgtg ttttgggcga cataccggag aacgagatct cgagcgatct 2401 ggtggagcgg ctggacctgg agaagcgcat cgagatggcg cgccgcaagg agcgcagcga 2461 ggccaatctc tatgtctccg tgcacgtgat cctcgaggag tacttcgagg accagcacaa 2521 gcggcggctc ttcgatctgg agaaggccca tccgcggatc ttcaggatca agcaaaatca 2581 gaccgtcgac gagctggtcg acatgtttgt caagggcttc ggcgtgacgc gcgaccggat 2641 gcgcatctgg aacatgtgca ccgcccagac gcaaaagttc ttgcactttg acttcgaggc 2701 ggaggcgtcg cgcaccatcg agcagatacc gacgtcccag aagccctggg tcatctggct 2761 ggagctggcc tggccgaatg tgcccggtcc cctgccgtcg ttcaatccca aaaccgaagt 2821 cttgctgttc ctcaagtact acgatgcgcg gaacaagcgg ctcaactaca tcggatgcac 2881 ccagcagccg catagccgcc ggctgagcga tctggtgccc gaggtcaacc ggaagctggg 2941 cttcgatccg gaaaccgagc tgaccatcta cgacgagtac gccgacaaga agctggtcaa 3001 tctgggcgag cccattgaga gcgtgctctt cataccgcag gaccacctgc agggccacat 3061 cctcatcttc gagcgcgaga gcgtcgacgc caagctggac ctgcccacgg tggaggacta 3121 cttcctcgat ctcgtctacc gcatcgagat catcttcagc gacaagtgca accccaatga 3181 gccggacttc acgctggagc tgtccaatcg ctacaactac gagcagctca ccaacgcggt 3241 ggccgagcgc ctgaacaccg atccccagaa gctgcagttc ttcatgtgca tcaacaacta 3301 caaggagacg gcgggcaatg cggtgcccta tacgttcaag ggcaccatca aggacctggt 3361 gtcgtacacc aaacagagca cgcccaagcg gatcttctac cagcgcctct cgctcagcat 3421 ccacgagctg gacaacaaga agcagttcaa gtgcgtctgg gtgagcggcg acctgaagga 3481 cgagaaggag ctggtgctgt acccgaacaa gaacgacacg gtgaagggcc tgctggagga 3541 ggcggccaag aagataacgt tcgcggagaa cagccgccgc aagctgcgcc tgatgaaggt 3601 cagcaaccac aagatcgtgg cggtctgcaa ggacgacata ccgctggaca cgctgctgaa 3661 gaccagcgag tcgatcacga ccacgcaggg cgcccagaag acttatcgca tcgaggaggt 3721 gccggcggag gagatgcagc tggcggagaa cgagttcctc atcccagtgg cgcacttcag 3781 caaggagctg tacaactcgt tcggcgtgcc cttcctcacc aaggcgcgcc agggtgagcc 3841 gtacggcgca ctgaagcagc gcatccagcg gcgcctgaat gtgcccgaca aggagtggga 3901 gaactacaag ttctccgtca tcaccatggg ccacaattcg gatgtgaacg acaacacgcc 3961 cgtcgacctg gaggtctatc gctcctggac caccggccag ctgcccttct tcggcctgga 4021 tcacatcaac aagtcgcgca agcgcagctc gctcaacttt tccgagaagg ccatcaagat 4081 ttacaactag ggggtttcgt tagaggagca gcagcagcag cagcagaagt ctgttatttt 4141 ttttgttgtc ggaaaagaag gggtcaaagg atttaaggat cgctctctcg ccggcaggct 4201 aagctaaatg tggtttcccc aggctcaaca agctcaacgt gcggacgaga gaacgacccc 4261 gggaagtatt gtgaaatgga acaacggcaa aaggaatgga tgatggatga ttggcggcca 4321 aaagtccacc caaattgtaa cagtgaagca gctctcgacg tcgcatttcc acgcaccttc 4381 gttggagccc cgatcacaca cacggaaaaa aaaaaacaaa gaagaactta ccccgcttaa 4441 tttaaataca aactgtttat ttttttgtaa tctaaccgct aagtcaaatg tagttattta 4501 ttaacccagc agaactggcc accagctcct tcccgatttc tatatgcggt ttacgtttcc 4561 gtttccgcat gccacaaatc ctgaccagag tatcaacttt cgcatcgagt ccagtcaccc 4621 agagttctac tgacttatcg cttgaactaa agttaaagta acttcaattt aggcttaggc 4681 ttttacgtgt gtgtgtattt tttatgctat aatattctta atcgataatt gtttaatcgc 4741 aggcagaagt gaattcgaaa tgaagcgaat cggttacttt ttgtctaaat gtaaataagt 4801 gttcgttgca agttgcccat taaaaaacac atcaaaaagt gaagggcgaa acagaaaaac 4861 aaaaaacaaa aaacccaaaa caagaaaaca aaggaagaac ctaaactaaa caaaaccaac 4921 aaaagataca tatatatata taaatataaa atatacgaga gagagagctg taaacaaata 4981 aacgcaacta agtaacaagt ataactttaa acaaggaaga aacaaacgat ttaaacaaaa 5041 agtcatcaag ttgcgctaaa cgagacaaag aaagggacgg atacagatac agttgatata 5101 ttcgagcagc agatcgaaag agacggaaga cggagatgaa aaatataaga tttgtttcaa 5161 acaattattt gtgattttta aacatgaaat gataaaaatg tatgcaaagg actagacaac 5221 ataatattaa ataataaatt actataatac aca