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LOCUS XM_017144207 5239 bp mRNA linear INV 09-DEC-2024 (Usp7), transcript variant X1, mRNA. ACCESSION XM_017144207 VERSION XM_017144207.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017144207.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5239 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5239 /gene="Usp7" /note="Ubiquitin-specific protease 7; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108059118" CDS 663..4076 /gene="Usp7" /codon_start=1 /product="ubiquitin carboxyl-terminal hydrolase 7" /protein_id="XP_016999696.2" /db_xref="GeneID:108059118" /translation="MEIETDQSIEAMDTQDTQEVEILTSDLQQQQQQQQLQTAQQNSP PQLPKFKNLIQPQLHAVGAVTQLPSENGNVPPQQLLADSSSTSFGQEAEAMGMDEESK EDQFRSETTFSFTVENVGQLKSQRLSPPVYVRMLPWKIMVIPNDRALGFFLQCNGEND SPTWSCNAIAELRLKCHKPEAQPFTRARIKHLFYSKENDYGYSNFITWQELQDAEKSY VHNNSITLEVHVIADAPHGVLWDSKKHTGYVGLKNQGATCYMNSLLQTLYFTNSLRLS VYRIPTEADDSTKSVGLSLQRVFHELQFGDRPVGTKKLTKSFGWETLDSFMQHDVQEF LRVLLDKLESKMKGTTLEGTIPGLFEGKMSSYIKCKNVDYNSTRYETFYDIQLNIKDK KNIYESFQDYVASETLEGDNKYDAGVHGLQEASKGVIFTSFPPVLHLHLMRFQYDPIT DSSIKYNDRFEFYEQINLDRYLAESEKTSADYVLHAVLVHSGDNHGGHYVVFINPKAD GRWFKFDDDVVSSCRKQEAIEQNYGGMDDEISFHAKCSNAYMLVYIRQSELERVLGDI PENEISSDLVERLDLEKRIEMARRKERSEANLYVSVHVILEEYFEDQHKRRLFDLEKA HPRIFRIKQNQTVDELVDMFVKGFGVTRDRMRIWNMCTAQTQKFLHFDFEAEASRTIE QIPTSQKPWVIWLELAWPNVPGPLPSFNPKTEVLLFLKYYDARNKRLNYIGCTQQPHS RRLSDLVPEVNRKLGFDPETELTIYDEYADKKLVNLGEPIESVLFIPQDHLQGHILIF ERESVDAKLDLPTVEDYFLDLVYRIEIIFSDKCNPNEPDFTLELSNRYNYEQLTNAVA ERLNTDPQKLQFFMCINNYKETAGNAVPYTFKGTIKDLVSYTKQSTPKRIFYQRLSLS IHELDNKKQFKCVWVSGDLKDEKELVLYPNKNDTVKGLLEEAAKKITFAENSRRKLRL MKVSNHKIVAVCKDDIPLDTLLKTSESITTTQGAQKTYRIEEVPAEEMQLAENEFLIP VAHFSKELYNSFGVPFLTKARQGEPYGALKQRIQRRLNVPDKEWENYKFSVITMGHNS DVNDNTPVDLEVYRSWTTGQLPFFGLDHINKSRKRSSLNFSEKAIKIYN" misc_feature 987..4043 /gene="Usp7" /note="Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly...; Region: Peptidase_C19; cl02553" /db_xref="CDD:470612" misc_feature order(1419..1421,1434..1436,2154..2156,2208..2210) /gene="Usp7" /note="active site" /db_xref="CDD:239124" polyA_site 5239 /gene="Usp7" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ttgacagctg cacgggctgc tgcatgtgta tgtgtgtgtg aaaatattaa ttgatacctg 61 gcgacgatgc agtgccgtgt gaaatacgtc agagctgttt gtttttaaat tcacacgatt 121 taagatctga tttaacaaaa tttgtgtttt cggcatacac gattgctggg ctagccaaaa 181 ggcgacggga aacgcacaca ccgacagctt aaaagcggac gaaaaacgca cacacccata 241 caaatgccat aaattgaagt gtatttgtaa tattgtattg ttggaaagaa agcaagcagc 301 atacgcatac cgcaaaaaaa tacgaagagg aggaaaataa gtttttgcca gagcttcagc 361 ttcagtttca gttttagttc ggtacaacgg cacggttttc gatttaaacg ccctcgcctt 421 gccgccgccc gcccaccagc accagtatcc tccacccagc gcccaccccc gatttttgaa 481 acgggagcgg agagcgagcg ggccgaaaat atatttattt atatttattg acagcaagca 541 cggttagcaa gcccagcgtt gcaagcgaga gagagcgata gtgggaagga aggaaggaag 601 gaaagagaga ggatttccaa tttcccactt gccatttcag caccattcaa gtgccgagta 661 aaatggaaat agaaacagac cagtctatcg aagccatgga cacccaggac acccaagagg 721 ttgagatcct caccagtgac ctccagcagc agcagcagca gcagcaacta cagacagcgc 781 agcagaattc gccgccacag ctgcccaaat tcaagaatct tatccagcca caactgcacg 841 ccgtcggcgc agtcacccag ttgcccagcg agaacggcaa tgtgccgccc cagcagctgc 901 tggccgacag cagctccaca tcgtttggcc aggaggccga ggccatgggc atggacgagg 961 agtccaagga ggatcagttc cgctcggaga ccaccttctc cttcaccgtc gagaatgtgg 1021 gccaactgaa gtcgcagagg ctatcgccgc ccgtctatgt gcgcatgctg ccctggaaga 1081 tcatggtcat accgaatgac cgggcgctgg gcttcttcct gcagtgcaac ggggagaacg 1141 actcgcccac ctggtcgtgc aatgccattg ccgagctgcg gttgaagtgc cacaagccgg 1201 aggcacagcc cttcacccgg gcccgcatca agcatctgtt ctactcgaag gagaacgact 1261 acggctactc gaacttcatc acctggcagg agctgcagga tgccgagaag agctatgtgc 1321 ataataatag catcaccctg gaggtccatg tcattgccga tgccccgcac ggcgttttgt 1381 gggactcgaa gaagcatacc ggctatgtgg gtctgaagaa tcagggcgcc acctgctaca 1441 tgaactccct gctgcagaca ctgtacttca ccaactccct gcggctgtcc gtctatcgca 1501 tacccacgga ggcggatgat agcaccaagt cggtgggtct gtcgctgcag cgggtcttcc 1561 acgaactgca gttcggcgac cgtcccgtcg gcaccaagaa gctaaccaag tcctttggct 1621 gggagacgct cgactcgttc atgcagcacg acgtccagga gtttctgcgc gtgctcctgg 1681 acaagctgga gtcgaagatg aagggcacca cgttggaggg caccattccg gggctgttcg 1741 agggcaagat gtcgtcgtat atcaagtgca agaacgtcga ctacaacagc acgcgctacg 1801 agacgttcta cgacattcag ctgaatatca aggacaagaa gaacatctac gagtccttcc 1861 aggattacgt ggcctccgag accctggagg gcgacaacaa gtacgatgct ggtgtgcacg 1921 gccttcagga ggccagcaag ggcgtcatct tcacatcatt cccgcccgtt ctgcatctcc 1981 atctgatgcg tttccagtac gatcccatca cggacagctc gatcaagtac aacgatcgct 2041 tcgagttcta cgagcagatc aatctggatc gctatctggc cgagagcgag aaaacgtcgg 2101 cggactacgt cctgcacgcg gtgctggttc actccggcga caaccacggc ggccactacg 2161 tggtcttcat caatcccaag gccgacggcc gttggttcaa gttcgacgac gacgtcgtct 2221 ccagttgccg caagcaggag gccatcgaac agaactacgg cggcatggac gacgagatct 2281 cgttccatgc caagtgcagc aacgcctaca tgctggtcta catccgccag tcggagctgg 2341 agcgtgtttt gggcgacata ccggagaacg agatctcgag cgatctggtg gagcggctgg 2401 acctggagaa gcgcatcgag atggcgcgcc gcaaggagcg cagcgaggcc aatctctatg 2461 tctccgtgca cgtgatcctc gaggagtact tcgaggacca gcacaagcgg cggctcttcg 2521 atctggagaa ggcccatccg cggatcttca ggatcaagca aaatcagacc gtcgacgagc 2581 tggtcgacat gtttgtcaag ggcttcggcg tgacgcgcga ccggatgcgc atctggaaca 2641 tgtgcaccgc ccagacgcaa aagttcttgc actttgactt cgaggcggag gcgtcgcgca 2701 ccatcgagca gataccgacg tcccagaagc cctgggtcat ctggctggag ctggcctggc 2761 cgaatgtgcc cggtcccctg ccgtcgttca atcccaaaac cgaagtcttg ctgttcctca 2821 agtactacga tgcgcggaac aagcggctca actacatcgg atgcacccag cagccgcata 2881 gccgccggct gagcgatctg gtgcccgagg tcaaccggaa gctgggcttc gatccggaaa 2941 ccgagctgac catctacgac gagtacgccg acaagaagct ggtcaatctg ggcgagccca 3001 ttgagagcgt gctcttcata ccgcaggacc acctgcaggg ccacatcctc atcttcgagc 3061 gcgagagcgt cgacgccaag ctggacctgc ccacggtgga ggactacttc ctcgatctcg 3121 tctaccgcat cgagatcatc ttcagcgaca agtgcaaccc caatgagccg gacttcacgc 3181 tggagctgtc caatcgctac aactacgagc agctcaccaa cgcggtggcc gagcgcctga 3241 acaccgatcc ccagaagctg cagttcttca tgtgcatcaa caactacaag gagacggcgg 3301 gcaatgcggt gccctatacg ttcaagggca ccatcaagga cctggtgtcg tacaccaaac 3361 agagcacgcc caagcggatc ttctaccagc gcctctcgct cagcatccac gagctggaca 3421 acaagaagca gttcaagtgc gtctgggtga gcggcgacct gaaggacgag aaggagctgg 3481 tgctgtaccc gaacaagaac gacacggtga agggcctgct ggaggaggcg gccaagaaga 3541 taacgttcgc ggagaacagc cgccgcaagc tgcgcctgat gaaggtcagc aaccacaaga 3601 tcgtggcggt ctgcaaggac gacataccgc tggacacgct gctgaagacc agcgagtcga 3661 tcacgaccac gcagggcgcc cagaagactt atcgcatcga ggaggtgccg gcggaggaga 3721 tgcagctggc ggagaacgag ttcctcatcc cagtggcgca cttcagcaag gagctgtaca 3781 actcgttcgg cgtgcccttc ctcaccaagg cgcgccaggg tgagccgtac ggcgcactga 3841 agcagcgcat ccagcggcgc ctgaatgtgc ccgacaagga gtgggagaac tacaagttct 3901 ccgtcatcac catgggccac aattcggatg tgaacgacaa cacgcccgtc gacctggagg 3961 tctatcgctc ctggaccacc ggccagctgc ccttcttcgg cctggatcac atcaacaagt 4021 cgcgcaagcg cagctcgctc aacttttccg agaaggccat caagatttac aactaggggg 4081 tttcgttaga ggagcagcag cagcagcagc agaagtctgt tatttttttt gttgtcggaa 4141 aagaaggggt caaaggattt aaggatcgct ctctcgccgg caggctaagc taaatgtggt 4201 ttccccaggc tcaacaagct caacgtgcgg acgagagaac gaccccggga agtattgtga 4261 aatggaacaa cggcaaaagg aatggatgat ggatgattgg cggccaaaag tccacccaaa 4321 ttgtaacagt gaagcagctc tcgacgtcgc atttccacgc accttcgttg gagccccgat 4381 cacacacacg gaaaaaaaaa aacaaagaag aacttacccc gcttaattta aatacaaact 4441 gtttattttt ttgtaatcta accgctaagt caaatgtagt tatttattaa cccagcagaa 4501 ctggccacca gctccttccc gatttctata tgcggtttac gtttccgttt ccgcatgcca 4561 caaatcctga ccagagtatc aactttcgca tcgagtccag tcacccagag ttctactgac 4621 ttatcgcttg aactaaagtt aaagtaactt caatttaggc ttaggctttt acgtgtgtgt 4681 gtatttttta tgctataata ttcttaatcg ataattgttt aatcgcaggc agaagtgaat 4741 tcgaaatgaa gcgaatcggt tactttttgt ctaaatgtaa ataagtgttc gttgcaagtt 4801 gcccattaaa aaacacatca aaaagtgaag ggcgaaacag aaaaacaaaa aacaaaaaac 4861 ccaaaacaag aaaacaaagg aagaacctaa actaaacaaa accaacaaaa gatacatata 4921 tatatataaa tataaaatat acgagagaga gagctgtaaa caaataaacg caactaagta 4981 acaagtataa ctttaaacaa ggaagaaaca aacgatttaa acaaaaagtc atcaagttgc 5041 gctaaacgag acaaagaaag ggacggatac agatacagtt gatatattcg agcagcagat 5101 cgaaagagac ggaagacgga gatgaaaaat ataagatttg tttcaaacaa ttatttgtga 5161 tttttaaaca tgaaatgata aaaatgtatg caaaggacta gacaacataa tattaaataa 5221 taaattacta taatacaca