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LOCUS XM_017144196 6507 bp mRNA linear INV 09-DEC-2024 transcript variant X6, mRNA. ACCESSION XM_017144196 VERSION XM_017144196.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017144196.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6507 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6507 /gene="Nup153" /note="Nucleoporin 153kD; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108059114" CDS 869..6364 /gene="Nup153" /codon_start=1 /product="nuclear pore complex protein Nup153 isoform X6" /protein_id="XP_016999685.2" /db_xref="GeneID:108059114" /translation="MEDGQEQRESSQAELSKLHPMTPLKEMPEEEEEEEEGEEEEEEG EEEEDESSAGAKQSNSSSSNNNSIMGKMKMRVSSILPASLSGWFSPSSKGGPESSPAN LHQPRQANGRSTTKRKRGRRRIMLAEADADAADDLDDGSDAKGLNYEEVALADNIAEH DLAAEDEQTRRSEYNVFLLRKRREAVDAAAAAAGEDEADAEEDELEEEDDEEEDDDEE QENLLQAAAAQPKRRRLELETTVNLRRLPLLSSTPAAGPLAGATSSSSQLAGARSRSQ LAPHRRNHLNLYGGQRQREPAYNFFTGNEAAEGITGDLPHSIRRSLNIPFGGSTAISS LPNHKRPSLLGQRTHRRDLVAMDETGLGSSISNSDGERLDHLLRISKTNNNISNNNNN NNNNVIKSKSRGGGAGGDSQSESDVNDYHDNGEGLRPSSHHNSNSNLEFYGNLQSTKS IFNRSNAATAQPSSHRNSTWSLNSLNQRRRFNASIYGSTSALSDSRLLSRSASTSGSA SASASSSPFYQGRTTFGGNSANNRVFSRSNLSSSAASSTLAINSAGSSPALSLTAGGI GYGMKAVDMRPTAAAGGNLSETSVSQSGGKKSGSGLSNTTLRILNLLDSYSTPLIDAK RMGSTLKEHQSSRQQRQAAPVASPYPRPSAAAAAALRATPNLSTELAELRSNKLLVPT MQQLLERRRLHRVTQNSRDVVHNSRVENQPNPNANPNPNPEKAKQYVAPPPVDQPASH SQQHTNKMRSRLSHQTRNKEPRTELEEAPLPPDLPQISFPDMASAPKFDLVIKPTTVP VSKPSAVLPIVSNKQLPNFLANPQPAAPIVNSSANGNVIPAAASKPMGRTFSFSEPTP LSSSQVNCVDKLDIKRKYYFPSPASLNEVQPQPPTMNGAMGFGEQFKKSAKEWECDMC MVRNKAEVSKCVACETAKPVAKSGAPPPPPAQAAPFVPLSAGFGDRFKKSSSAWECDA CMLSNKAEASKCIACETPRKTATATAAPKVNNFPLMINNSGGVSGFGMAFKPKADTWE CQVCLVMNKSSAAECVACQSPKPNSQAKGARSPTTSSSSSSSSSGSSSGSSSGSSSGS SSSSSSSASGASSPGRSASAAATETPKQDAGFKQLVAAQKAASWDCDACMAQNDMSRV KCICCEQLKPGAASPASTSSVISISSSDSSASSVPKFSFGFATVKEVVKQPAAEQTPA APAAAPSQFSFGFGGSSVGKDVADSKKATTEATKTFAFGVGKVDQPKTVSFKADTKDT ETKTPAAAAPALQFVFKAPTTATTATTATSITTTTTSSSSSSTTAPALAAFSFGAPSS SSTVSSSTASTAVKPMFSFSGAGSAVSSSSSSSSSFGVSSNAITTTTTASSTTAFALA PAVTPSQAAPAPAANFSFGTSASASQPKTSSAGTFFFGQTPAAAATPATPASVSSIFG STVASTSSSSLSVTTTSTAASTPQLFGNWGEKKTTTTETTTSGSSSSATKAFTFGSGT TTSTPSFGWSSNGAAAAAKITSAAVSSSSASTMATPVFGSSPMFGATSSSSTISTTSS SPFGSTATATTAAAATPAASLGGNGALAGVFGHVGNSLVASSGAPGAATPATSASAAS TAAPLANIFGHPTPIAAAAPVFGSGSSNTSGGFGAAAAAAATSAATAGPGSKLAFNFG GGAAAAPAPSSAPFKFGSTTNEPAVKPAFNFTGSAASSTPQAATFNFSANPAATSLSG GDSQSQPRIFQFGNPLAVVDSQASGAGGANNNSTSGGMPIFNFTAAAAPQMQSTPNAN APFQFSAGSPAPANIFAFNPPAAGNSAQNSQMARRKIRTPVRRLPPR" misc_feature 3581..3667 /gene="Nup153" /note="Zn-finger in Ran binding protein and others; Region: zf-RanBP; pfam00641" /db_xref="CDD:395516" misc_feature 3593..3652 /gene="Nup153" /note="RanBP2-type Zn finger [structural motif]; Region: RanBP2-type Zn finger" /db_xref="CDD:275376" misc_feature 3770..3844 /gene="Nup153" /note="Zn-finger in Ran binding protein and others; Region: zf-RanBP; pfam00641" /db_xref="CDD:395516" misc_feature 3770..3829 /gene="Nup153" /note="RanBP2-type Zn finger [structural motif]; Region: RanBP2-type Zn finger" /db_xref="CDD:275376" misc_feature 3941..4030 /gene="Nup153" /note="Zn-finger in Ran binding protein and others; Region: zf-RanBP; pfam00641" /db_xref="CDD:395516" misc_feature 3953..4012 /gene="Nup153" /note="RanBP2-type Zn finger [structural motif]; Region: RanBP2-type Zn finger" /db_xref="CDD:275376" misc_feature 4115..4174 /gene="Nup153" /note="RanBP2-type Zn finger [structural motif]; Region: RanBP2-type Zn finger" /db_xref="CDD:275375" misc_feature 4250..4339 /gene="Nup153" /note="Zn-finger in Ran binding protein and others; Region: zf-RanBP; pfam00641" /db_xref="CDD:395516" misc_feature 4262..4321 /gene="Nup153" /note="RanBP2-type Zn finger [structural motif]; Region: RanBP2-type Zn finger" /db_xref="CDD:275375" ORIGIN 1 ctggagacat cgatagcagc gagccaacat cgattcaagt tccagctcta tactgtggcc 61 acacacgcgt tttttcccaa atcgtgcttt tttttgtgaa atttcgtttg ttgcaatcgg 121 catttcatta atttcgcgca gccaacggaa aacccagcgc gggcacgaaa ccgagtcaaa 181 gttgccagca agtgcgtgca attggccgca ggaaaatgcc aaaattcgga ccgattcgca 241 gcgcgcgtgt gtgtgtgtga gaagagtgaa gaagaggagc gaagaattgc gaaagcagtg 301 tgtgcaaggc ggaagaagca caaagacaaa agggaggcga taaaaaattc ggcaggcggt 361 gcggtgcggt gctgtccggc gatcgaaacg gaacgaaacg aagcgaaaag aatcgcagga 421 gcaaaacaag gcggcatgcc ggaaagcgtg cccagcattc acatagacga ggtggtggcc 481 aaagttaaac ccaaggcgaa tgctgtcagt ttgtggcgcc aaacggaata gtttttaaaa 541 atatcgccgc gtgtgtgaaa tctcggcgaa actcgggaga aaagaataaa aaaccacgac 601 ggcgtgcgta agcgcactca cacgctcgca cacgcacaga cagagagaga gcgagagcga 661 gagggagaga gcgacagcta agagccagag cgagtgagcg ctacacacgc acacaaactc 721 gctggcagga attgcaacag tgtgtgcttc tttttttttt tttttgttgt gtgcgcggcg 781 gcgcttcttt ttggctgctt tttgtgtctc tcttttgggc cgttgcttcg ccggctaaga 841 aggaaaagcg aaatttgaaa ttggcataat ggaggatggt caggagcaaa gggaatcctc 901 gcaagcggag ctgtccaagc tgcatccgat gacgccgctg aaggagatgc ccgaagaaga 961 ggaggaggag gaggagggtg aggaggagga ggaggagggt gaggaggagg aggacgaatc 1021 ctcggcggga gccaagcagt ccaatagcag cagcagcaac aacaactcca tcatgggcaa 1081 gatgaagatg cgcgtctcca gcattctgcc cgcctccctg agcggctggt tctcgccctc 1141 atcgaagggt ggccccgaat cctccccagc caatctccac cagcctcgcc aggccaacgg 1201 acgctccacc acgaagcgga aacgcggacg ccgtcgcatc atgctggccg aagcggatgc 1261 cgatgcagcc gacgacctgg acgacggttc cgatgccaag gggctcaact acgaggaggt 1321 ggccctggcc gacaacatag ccgagcacga cctggccgcc gaggatgagc agacgcggcg 1381 cagcgagtac aatgtgttcc tgctgcgcaa gcgacgcgag gcggtggatg ccgccgctgc 1441 tgccgctggc gaggatgagg ccgatgccga ggaggatgaa ctggaggagg aggatgacga 1501 ggaggaagac gacgacgagg agcaggagaa tctcttgcag gcagccgcag cgcagcccaa 1561 aaggcggcgt ctggagctgg agaccaccgt caacttgcgt cgtctgcctt tattgtcatc 1621 cacgcctgct gccggccctc ttgcaggtgc caccagctcc tcctcgcagt tggcgggcgc 1681 caggagcaga agccagttgg ctcctcaccg gcgcaaccac ctcaacttgt acggcggcca 1741 aaggcagcgc gaaccagcct acaacttttt cacgggcaac gaagccgccg agggcatcac 1801 cggggatctg ccgcacagca tccgtcgctc gttgaacata cctttcggag gcagcaccgc 1861 catctccagc cttcccaacc acaagcgacc ctcgcttctg ggccagcgaa cacatcgtag 1921 ggatctggtg gccatggatg aaacgggtct gggctcctca atatccaatt ccgacggcga 1981 gcggctcgat catttgctga ggatcagcaa gaccaacaac aacataagca acaataacaa 2041 taataataac aacaatgtca tcaagtcaaa gtcaagagga ggaggagctg gtggagattc 2101 gcagtccgag agcgatgtaa acgattacca cgacaatggt gagggactgc gaccgtcgtc 2161 gcatcacaac agcaacagca atctggagtt ctacggcaat ctgcagagca ccaagtcgat 2221 attcaacagg agcaacgccg ccaccgcgca gccatcatcg catcgcaatt ccacgtggtc 2281 cctgaactcg ctgaaccagc ggcgtcgctt caatgcctcc atttacggca gcacgtcggc 2341 cctgagcgac agtcgcctgc tgagtcgcag tgcctcaacc tctggctcgg catcggcttc 2401 ggcctccagt tcgccgttct accagggacg caccaccttt ggcggcaatt cggccaacaa 2461 tcgggtgttt agtcgcagca atctaagctc ctcggccgcc tcctccacgc tggccattaa 2521 ttcggctggc agttcaccgg cgctttcgtt gaccgccggt ggcattggtt acgggatgaa 2581 ggcagtggat atgcgaccaa ctgccgccgc aggtggtaat ctctctgaaa catctgtaag 2641 ccagagtggc ggcaaaaagt ccggctccgg cctgtcgaac accacgctgc gcatcctcaa 2701 cctgctggac agctactcca cgccattgat cgatgccaag cgcatgggca gcaccctcaa 2761 ggagcaccaa agcagtcgcc agcagcgtca ggcagctccg gtcgcatcgc cgtatccacg 2821 tccctcggcg gcggcggcgg cggcgttacg cgctacgccc aatctgtcca ccgaattggc 2881 cgagctgcgc tctaataaac tgctggtgcc caccatgcag cagcttttgg aacgccggcg 2941 cctgcatcgc gttacccaga actcccgcga tgtggtgcac aattcgcgcg tggagaacca 3001 gccaaatcca aacgcaaacc cgaatccaaa tccagagaag gccaaacaat atgttgctcc 3061 tcctccggtg gatcagccgg ccagccatag tcagcagcac acaaacaaga tgcgctcgcg 3121 actctcgcat cagacgcgca acaaggagcc gcgcacggag ctggaggagg cacccctgcc 3181 gccggatctg ccgcagatca gcttcccgga catggccagt gcgccaaagt tcgacttggt 3241 catcaaaccg acgacggtgc cagtctccaa gccatctgcc gtgctcccaa tcgttagtaa 3301 taagcagctg cccaacttcc tggccaatcc acagcctgcg gctcccattg ttaactcttc 3361 cgccaatgga aacgtcatcc cagcagccgc tagtaaacca atgggacgca cattcagctt 3421 ctcggagccc acacctttgt cgagttcgca ggtgaactgt gtggacaagc tggatatcaa 3481 gcgtaaatac tacttccctt caccggcttc actaaatgag gtgcaaccac agccgcccac 3541 tatgaatgga gcaatgggat tcggtgagca gtttaaaaag tccgccaagg aatgggagtg 3601 cgacatgtgc atggtgcgca acaaggcgga ggttagcaag tgtgtggcct gtgagacggc 3661 caaaccggta gcgaaatctg gagctccccc tcctcctcca gcacaggcag caccatttgt 3721 gccactttct gccggctttg gggatcgttt caagaaatcc tcttccgcct gggagtgcga 3781 cgcctgcatg ctgtccaaca aggcggaggc cagcaagtgc attgcctgcg agacgccccg 3841 aaagactgcg actgcgactg cggctccgaa ggtgaacaac tttccgctga tgataaacaa 3901 ttcgggtgga gtttccggtt ttggtatggc cttcaagcca aaggcggata cgtgggagtg 3961 ccaggtgtgc ctggtgatga acaagtccag tgccgccgag tgcgtggcct gccagtcgcc 4021 caagccaaat tcgcaagcca aaggcgcccg tagcccaact acatcgtcct cctcctcgtc 4081 atcctcctcg ggatcatctt ctggctcatc ctcgggctca tcctcgggtt catcctcttc 4141 gtcgagcagc tcagcctcgg gtgcatcctc cccaggaaga tcagcatcag cagctgcaac 4201 ggagacgccc aagcaggatg ctggattcaa gcagctggtg gcagcccaaa aggcagccag 4261 ttgggactgc gatgcttgca tggcccagaa cgatatgtcg cgcgtcaagt gcatctgctg 4321 tgagcaactg aagccgggag cagccagccc cgcctccacg tcctccgtga tctcgatttc 4381 ctcctccgac agtagcgcca gttcggtgcc caaatttagc tttggctttg cgacggtcaa 4441 ggaggtggtc aagcagccag ctgcggaaca gactccggct gctccagcag ctgctccttc 4501 ccagtttagc ttcggctttg ggggcagcag tgtgggcaag gatgtggccg acagtaagaa 4561 ggcgacgacg gaagccacaa agacttttgc gttcggcgtt ggcaaagtgg atcagcccaa 4621 gacggtgagc ttcaaggcgg atacaaagga tacagagact aaaactccag ctgcagctgc 4681 accagccctt cagtttgtat tcaaagcacc aactacggca accactgcaa ccacggccac 4741 ctcaatcact accacaacca ccagcagcag tagcagtagc accactgctc ctgctttggc 4801 agcctttagc tttggcgctc catcttcatc ctcgactgtg tccagttcca cggccagcac 4861 ggctgtcaag cccatgttta gcttctcggg agccggcagt gcagtcagca gcagcagcag 4921 cagcagcagc agctttggtg tctcctcgaa tgccattaca acaacgacga cagcctcctc 4981 gacgacagcc tttgccttag caccggcagt aactccatct caagctgcac ctgctccagc 5041 tgccaacttt agctttggaa caagtgcaag tgcaagtcag ccgaagacgt cgtccgctgg 5101 aaccttcttc tttggccaga caccagcggc agccgcgacg ccagcaacgc cagccagcgt 5161 gagctcaatc tttggatcaa cagtggcgag cactagcagt tccagcttaa gtgtaaccac 5221 caccagcacg gccgcctcaa ccccgcagct ctttggcaac tggggtgaga agaagacaac 5281 cacgacggag acgacgacca gcggcagcag cagcagcgca acgaaggcat tcacctttgg 5341 atccggaacg acgacgagca cgcccagctt cggctggtca agcaatggag ccgcggcggc 5401 ggctaagatc accagtgcgg cggtgtcatc ctcgtcggcc tccacaatgg ccacgccggt 5461 ctttggcagc agtcccatgt ttggagctac tagcagcagc agtaccatca gcaccaccag 5521 tagctcacct tttggatcga cagcgacggc gacaacggcg gcggcggcca caccggcagc 5581 tagtttgggt ggcaacggag ccctcgccgg ggtctttggc catgtgggca actcactggt 5641 tgcctcatct ggagcacctg gagccgccac gccggctacc tctgcctcgg ccgcctcgac 5701 cgctgctccg ctggccaata tctttggcca tccgacgccc attgcggcgg cagcgcctgt 5761 ttttggcagc ggcagcagca atacgagcgg aggattcgga gcagctgcag ctgcagctgc 5821 cacatcggcc gcaacagcgg gcccgggatc gaagctagca tttaactttg gcggaggagc 5881 cgcagccgcg ccagctccct cgagtgcacc attcaagttt ggaagcacca ccaatgagcc 5941 ggcggtcaag cctgcgttca actttacggg ctccgcggcg agctcgactc ctcaggcggc 6001 caccttcaac ttctcggcca atccggcggc caccagtctg tccggcggcg attcgcagtc 6061 gcagccgcgc atcttccaat ttggaaatcc attagcggtg gttgatagcc aggctagtgg 6121 agcgggaggt gccaacaaca actccacctc cggcggtatg cccatattca attttaccgc 6181 cgccgcggcg ccgcagatgc agtcaacgcc gaatgccaat gcaccgttcc aatttagcgc 6241 cggttcccca gcgccagcca atatatttgc cttcaatccg ccagccgctg gcaattcggc 6301 gcagaattct cagatggctc gtcgcaagat ccggactccc gtgcgccgcc tgccgccccg 6361 gtagaaatgg catcgcagtc ggccgtcgag atagcaaatg catctgctga ggccgccatc 6421 ggattaggct taggatgggg ggtgctgcca ggaggaggag gcggaggcgg aggagcagca 6481 gcggaggagt atgacagcaa cagcaac