PREDICTED: Drosophila takahashii ubiquitin carboxyl-terminal

LOCUS       XM_017144187            1268 bp    mRNA    linear   INV 09-DEC-2024
            hydrolase isozyme L5 (LOC108059109), mRNA.
ACCESSION   XM_017144187
VERSION     XM_017144187.3
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 9, 2024 this sequence version replaced XM_017144187.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1268
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..1268
                     /gene="LOC108059109"
                     /note="ubiquitin carboxyl-terminal hydrolase isozyme L5;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 7 Proteins"
                     /db_xref="GeneID:108059109"
     CDS             118..1164
                     /gene="LOC108059109"
                     /codon_start=1
                     /product="ubiquitin carboxyl-terminal hydrolase isozyme
                     L5"
                     /protein_id="XP_016999676.2"
                     /db_xref="GeneID:108059109"
                     /translation="MAEANPVAGSGSGSGSGGGSKEEPDSSWCLIESDPGVFTELIRG
                     FGCTGAQVEEIWTLDADAFHHLEPIHGLIFLFKWVQDDKPAGRVVRDRSDIFFARQVI
                     PNACATQALLSLLLNLRHPDVDLGDTLNGFKRFCQDLDPVTRGLCLSNEEKIRQVHNS
                     FARPVLFELDMRMAPPDEDVYHFVGYMPIRGRLFELDGLHEGPIELAEIGRDQNWLDV
                     VRPIIEARMQRYSVGEIHFNLMALVSDRQRSYERQIQLLVHQPSPLSHSERQAEIASL
                     RTYVRFEQDKKRRYRQENLRRRHNYLPFIVELLKQLGETGQLMPIYEKAKQRAIQSQV
                     SRCAGLKLKQAQGQ"
     misc_feature    199..843
                     /gene="LOC108059109"
                     /note="Cysteine peptidase C12 containing ubiquitin
                     carboxyl-terminal hydrolase (UCH) families UCH37 (UCH-L5)
                     and BAP1; Region: Peptidase_C12_UCH37_BAP1; cd09617"
                     /db_xref="CDD:187738"
     misc_feature    order(415..417,433..435,661..663,706..708)
                     /gene="LOC108059109"
                     /note="cancer-causing mutation sites; other site"
                     /db_xref="CDD:187738"
     misc_feature    order(415..417,433..435,661..663,706..708)
                     /gene="LOC108059109"
                     /note="catalytic site [active]"
                     /db_xref="CDD:187738"
     misc_feature    934..1071
                     /gene="LOC108059109"
                     /note="Ubiquitin carboxyl-terminal hydrolases; Region:
                     UCH_C; pfam18031"
                     /db_xref="CDD:465622"
     polyA_site      1268
                     /gene="LOC108059109"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 gtcatgaata ttctccgttt catgtgtcac aaaaactcca aacaaacccc aaaattctga
       61 gctcatcgtt tgttgtccac caggatctgt tgttgaaatt gctaaattac agctaggatg
      121 gcggaagcaa atccagtagc aggatcagga tcaggatcag gatcaggagg aggatccaaa
      181 gaggagcccg acagcagctg gtgcctcatc gagagcgacc cgggggtctt caccgaactg
      241 attcggggct tcggctgcac gggcgcccag gtggaggaga tctggaccct ggacgccgac
      301 gccttccacc acctggagcc catccacggc ctgatcttcc tgttcaagtg ggtgcaggac
      361 gacaagcccg ccggtcgcgt ggtgcgcgat cggagcgaca tcttcttcgc ccgccaggtg
      421 atcccgaatg cctgtgccac gcaggccctc ctcagtctcc tgctgaacct ccgccacccg
      481 gacgtcgatc tgggcgacac tctgaacggc ttcaagcgct tctgccagga cctggacccc
      541 gtgacccggg gcctctgcct gagcaacgag gagaagatcc gccaagtgca caactccttc
      601 gcccgacccg tgctcttcga gctggacatg cggatggctc cgccggacga ggatgtctac
      661 cacttcgtgg gctacatgcc cattaggggc cgtctgttcg agctggacgg gctgcacgag
      721 ggtcccatcg agctggccga gatcggcagg gaccagaact ggctggacgt ggtgagaccc
      781 atcatcgagg cccgcatgca gcgctacagc gtcggggaga tccacttcaa cctgatggcc
      841 ctggtctcgg atcgccagcg gagctacgag cggcagatcc agctgctcgt ccaccagccg
      901 tcgccgctga gccactcgga gcggcaggcg gagatcgcca gcctcaggac ctacgtgaga
      961 ttcgagcagg acaagaagcg ccgctaccgc caggagaacc tccggcggcg ccacaactat
     1021 ctgcccttca tcgtcgagct gctgaagcag ctgggcgaga ccggccagct gatgcccatc
     1081 tacgagaagg ccaagcagcg ggccatccag agccaggtgt ccaggtgcgc cggccttaag
     1141 ctcaagcaag cccaaggaca gtgatttaaa ttttgatgtc atcttaacca atcttatatt
     1201 ctctggaaaa atctgcgaat tattatagtt aatatatttt tccaatatgg attacgttta
     1261 aaagataa