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LOCUS XM_017144169 7917 bp mRNA linear INV 09-DEC-2024 paralytic (para), transcript variant X28, mRNA. ACCESSION XM_017144169 VERSION XM_017144169.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017144169.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7917 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..7917 /gene="para" /note="sodium voltage-gated channel paralytic; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins" /db_xref="GeneID:108059094" CDS 785..7078 /gene="para" /codon_start=1 /product="sodium channel protein para isoform X28" /protein_id="XP_016999658.2" /db_xref="GeneID:108059094" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEVPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPL EDIDPFYSNVLTFVVVSKGKDIFRFSASKAMWMLDPFNPIRRVAIYILVHPLFSLFII TTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLD FVVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVII LTMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWDYHNRNSSNWYSEDE GISFPLCGNISGAGQCDDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWED LYQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGE KGNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTYTIRNGRGRFGI PGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLGSRHSSYTSH QSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNTRNQSVGATNGGTTCLDTNHKLEH RDYEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDR GEDDDEDGPTFKDKALEVILKGIDVFCVWDCCWVWLKLQEWISLIVFDPFVELFITLC IVVNTMFMAMDHHDMNKEMERVLKSGNYFFTATFAIEATMKLCAMSPKYYFQEGWNIF DFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISIMGRTMGALGNL TFVLCIIIFIFAVMGMQLFGKNYHDHKDRFPDGDLPRWNFTDFMHSFMIVFRVLCGEW IESMWDCMYVGDVSCIPFFLATVVIGNLVVLNLFLALLLSNFGSSSLSAPTADNDTNK IAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSEHGDNELELGHDEILADGL IKKGIKEQTQLEVAIGDGMEFTIHGDMKNNKPKKSKYLNNATDDDTASINSYGSHKNR PFKDESHKGSAETMEGEEKRDASKEDLGLDEELDEEGECEEGPLDGDIIIHAHDEDIL DEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAVITMILMS SLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDF VIVMVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSI FNVLLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESENYTWVNS AMNFDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIF GSFFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRP RWRPQAIVFEIVTDKKFDIIIMLFIGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVIF SSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAK VGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSG INDVYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGNCGSATVG ITFLLSYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGT QYIRYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFAR KGNPIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKARGEGGGG GGGSFEPDPDQVDGDGGGDPDAGEPANDEPADGMAEAPAGGGGGGGGGDGSVNGGGTG TGTGDGAADAADESNVNSPGEDAASAAAGAATGATAGSPGAGSAGRQTAVLVESDGFV TKNGHKVVIHSRSPSITSRTADV" misc_feature 1238..2092 /gene="para" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 2441..2941 /gene="para" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 3146..3781 /gene="para" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3857..4516 /gene="para" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4526..5341 /gene="para" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5309..5467 /gene="para" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 5354..5365 /gene="para" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 5489..6241 /gene="para" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 6272..6415 /gene="para" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acacgcgctg cggcagctga cagtttcagt aaaccacgga gacgaacgga ttacggctct 61 gggaacaaaa cgcaacgttt gatgaaaatt tttggcaact cgtcgcgtcg tcttggttgt 121 tgttaaccac atcctgctaa cgccaaagtc cgaaaataaa attcaaccca aatacccaaa 181 aataacacag atcaaacaaa caaagcaaaa aaaaagcaaa caaaataaca aaaaaaaacc 241 aaaaaaaaaa acaaacaaaa aattcatctt ctacttgttc taccgcttca actttattcg 301 tcttcgtctc cgtaataaat atataaaaag tatatacata tatatatata tatatatgca 361 tatgtgtgtg agtgcgtcgc gtgtgtgttg gtgcctgtaa atgtgtgagc cacaacaaca 421 acaacagcag cagcagccag agccagagca acaaccacag cagcagcaac aacaacaaca 481 acaacagtag ttaacagcag caacaattct tagcagcaat aacaatacaa gcaagcacca 541 ccacaacaac aagagcagca acaacaccaa aaacagccac aatagcaatc acaataacaa 601 catcaaagga tagagcgagc agccaagcac aacatcgatt gacatcgatt aacgcatcgt 661 gctaagcggc gggcgctaat cgaacatggc gcctcggata tagttgtagc tttaatgtag 721 caggcgacat ccatgtgcct catgccttgg aaatctaagg ctctcatcgt tggccgcata 781 gacaatgaca gaagattccg actcgatatc tgaggaagaa cgcagtttgt tccgtccctt 841 tacccgcgaa tcattggtgc aaatcgaaca acgcattgcc gctgaacatg aaaagcagaa 901 ggagctggaa agaaagagag ccgagggaga ggtgccgcaa tatggtcgca agaaaaaaca 961 aaaagaaatc cgatatgatg acgaggacga ggatgaaggt ccacaaccgg atcctacact 1021 tgaacagggt gtgccaatac ctgttcgatt gcagggcagc ttcccgccgg aattggcctc 1081 cactcctctc gaggatatcg atcccttcta cagcaatgta ctgacattcg tagttgtaag 1141 caaaggaaaa gatatttttc gcttttctgc atcaaaagca atgtggatgc tcgatccatt 1201 caatccgata cgtcgtgtgg ccatttacat tctagtgcat ccattatttt ccctattcat 1261 catcaccaca attctcgtca actgcatcct gatgataatg ccgacaacgc ccacggttga 1321 gtccactgag gtgatattca ccggaatcta cacatttgaa tcagctgtta aagtgatggc 1381 acgaggtttc attttatgcc cgtttacgta tcttagagat gcatggaatt ggctggactt 1441 cgtagtaata gctttagctt atgtgaccat gggtatagat ttaggtaatc tagcagcctt 1501 gcgaacgttt agggtgctgc gagcgcttaa aaccgtagcc attgtgccag gcttgaagac 1561 catcgtcggc gccgtcatcg aatcggtgaa gaatctgcgc gatgtgataa tcctcaccat 1621 gttctccctg tcggtcttcg cgctgatggg cctgcagatc tacatgggcg tgctcacgca 1681 gaagtgcatc aagaagttcc cgctggacgg ctcctggggc aatctgaccg acgagaactg 1741 ggactatcac aatcgcaaca gctccaattg gtactcggag gacgagggca tctcatttcc 1801 gctgtgcggc aatatatccg gcgcggggca atgcgacgat gactacgtgt gtctgcaggg 1861 gtttgggccg aatccgaact acggctacac cagcttcgat tcattcggct gggccttcct 1921 gtccgccttc cggctgatga cacaggactt ctgggaggac ctctaccagc tggtgttgcg 1981 cgccgccgga ccatggcaca tgctgttctt tatagtcatc atcttcctag gttcattcta 2041 tcttgtgaat ttgattttgg ccattgttgc catgtcgtat gacgaattgc aaaagaaggc 2101 cgaagaagaa gaggctgccg aagaggaggc gatacgtgaa gcggaggagg ctgccgccgc 2161 caaagctgcc aagctggagg agcgggccaa tgcgcaggct caggcagcag cggatgcggc 2221 tgccgccgaa gaggctgcac tgcatccgga gatggccaag agtccgacgt attcgtgcat 2281 cagctatgag cttttcgttg gcggcgagaa gggcaacgat gacaacaaca aggagaagat 2341 gtccattcgc agcgtcgagg tggagtcgga gtcggtgagc gttatacaaa gacaaccagc 2401 acctaccaca gcacaccaag ctaccaaagt tcgtaaagtg agcacgtaca cgatacggaa 2461 cggacgtggc cgctttggta tacccggtag cgatcgcaag ccgttggtat tgtcaacata 2521 tcaggatgcc cagcagcact tgccctatgc cgacgactcg aatgccgtca ccccgatgtc 2581 cgaggagaac ggggccatca tagtgcccgt gtactatggc aacctaggct ctcggcactc 2641 atcgtatacc tcgcatcagt cccgaatatc gtatacctca catggcgatc tactcggcgg 2701 catggccgtc atgggcgtca gcacaatgac caaggagagc aaattgcgca accgcaacac 2761 acgcaatcaa tcagtgggcg ccaccaatgg cggcaccacc tgcctggaca ccaatcacaa 2821 gctcgagcat cgcgactacg aaatcggtct ggagtgcacg gacgaagctg gcaagattaa 2881 acatcatgac aatcctttta tcgagcccgt ccagacacaa acggtggtcg acatgaaaga 2941 tgtgatggtc ctgaatgaca tcatcgaaca ggccgctggt cggcacagtc gggcaagcga 3001 tcgcggtgag gacgatgacg aggacgggcc gacgttcaaa gacaaggcac tcgaagtgat 3061 cctaaagggc atcgatgtgt tttgtgtgtg ggactgttgc tgggtttggt tgaaattgca 3121 ggagtggatc tcgctgatcg tcttcgatcc cttcgtcgag ctcttcatca cgctgtgcat 3181 tgtggtcaac acgatgttca tggcgatgga tcaccacgat atgaacaagg agatggagcg 3241 cgtgctcaag agtggcaact atttcttcac ggccaccttt gccatcgagg ccaccatgaa 3301 gctgtgcgcc atgagcccca agtactattt ccaggagggc tggaacatct tcgacttcat 3361 catcgtggcc ctgtcgcttt tggagctggg tctcgagggc gtccagggcc tgtccgtctt 3421 gcgttcgttt cgattgctgc gtgtatttaa attggccaaa tcttggccaa cacttaattt 3481 actcatttcg attatgggac gcaccatggg cgctttgggt aatctgacat ttgtactttg 3541 cattatcatc ttcatctttg cggtgatggg aatgcaactg ttcggaaaga attatcatga 3601 tcacaaggac cgtttcccgg atggcgacct gccgcgctgg aacttcaccg actttatgca 3661 cagcttcatg atcgtgttcc gggtgctctg cggcgaatgg atcgagtcca tgtgggactg 3721 tatgtacgtg ggcgatgtct cgtgcattcc cttcttcttg gccaccgttg tcatcggcaa 3781 tcttgtggta cttaaccttt tcttagcctt gcttttgtcc aattttggct catctagctt 3841 atcagcgccg actgccgata acgatacgaa taaaatagcc gaggccttca atcgaattgg 3901 ccgatttaaa agttgggtta agcgtaatat tgctgattgt ttcaagttaa tacgtaacaa 3961 attgacaaat caaataagtg atcaaccatc agagcatggt gacaacgaac tggagctggg 4021 gcacgacgag atcctcgccg atggcctgat caagaaggga atcaaggagc agacgcaact 4081 ggaggtggcc atcggggatg gcatggagtt cacgatacac ggcgacatga agaacaacaa 4141 gccgaagaaa tccaaatatc taaataacgc aacggacgac gacactgcca gcattaactc 4201 atatggtagc cataagaatc gaccattcaa ggacgagagc cacaagggca gcgccgagac 4261 gatggagggc gaggagaagc gcgacgccag caaggaggat ttaggtctcg acgaggaact 4321 ggacgaggag ggcgaatgcg aggagggccc gctcgacggt gatatcatta ttcatgcaca 4381 cgacgaggat atactcgatg aatatccagc tgattgctgc cccgattcgt actataagaa 4441 atttccgatc ttagccggtg acgatgactc gccgttctgg caaggatggg gcaatttacg 4501 actgaaaact tttcaattaa ttgaaaataa atattttgaa acagctgtta tcactatgat 4561 tttaatgagt agcttagctt tggcattaga agatgtacat ctgccacaaa gacccatact 4621 gcaggatatt ttatactata tggacagaat atttacggtt atattcttct tggaaatgtt 4681 aatcaagtgg ttggcgctcg gcttcaaagt gtacttcacc aacgcgtggt gttggctcga 4741 tttcgtgatt gtcatggtat cgcttatcaa cttcgttgct tcacttgttg gagctggtgg 4801 tattcaagcc ttcaagacta tgcgaacgtt aagagcactg agaccactac gtgccatgtc 4861 ccgtatgcag ggcatgaggg tcgtcgttaa tgcgctggta caagctatac cgtccatctt 4921 caatgtgcta ttggtgtgtc taatattttg gctaattttt gccataatgg gtgtacagct 4981 ttttgctgga aaatatttta agtgcgagga catgaacggc acgaagctca gccacgagat 5041 cataccaaat cgcaatgcct gcgagagcga gaactacacg tgggtgaatt cagcaatgaa 5101 tttcgatcat gtaggtaacg cgtatctgtg ccttttccaa gtggccacct tcaaaggctg 5161 gatacaaata atgaacgatg ctatcgattc acgagaggtg gacaagcaac caattcgtga 5221 aacgaacatc tacatgtatt tatatttcgt attcttcatc atatttggat catttttcac 5281 actcaatctg ttcattggtg ttatcattga taattttaat gagcaaaaga aaaaagcagg 5341 tggatcatta gaaatgttca tgacagaaga tcagaaaaag tactataatg ctatgaaaaa 5401 gatgggctct aaaaaaccat taaaagccat tccaagacca aggtggcgac cacaagcaat 5461 agtctttgaa atagtaaccg ataagaaatt cgatataatc attatgttat tcattggtct 5521 gaacatgttc accatgaccc tcgatcgtta cgatgcgtcg gacacgtaca acgcggtcct 5581 agactatctc aatgcgatat tcgtagttat tttcagttcc gaatgtctat taaaaatatt 5641 cgctttacga tatcactatt ttattgagcc atggaattta tttgatgtag tagttgtcat 5701 tttatccatc ttaggtctcg tacttagcga tattatcgag aagtacttcg tgtcgccgac 5761 cctgctccga gtggtgcgtg tggcgaaagt gggtcgagtc ctgcgactgg tgaagggcgc 5821 caagggcatc aggacactgc tattcgcgtt ggccatgtcg ctgccggccc tcttcaacat 5881 ctgcctgctg ctgttcctgg tcatgttcat cttcgccatc ttcggcatgt cgttcttcat 5941 gcacgtgaag gagaagagcg gcatcaacga cgtctacaac ttcaagacct ttggtcagag 6001 catgatcctg ctctttcaga tgtcgacgtc agccggttgg gatggtgtac tggacgccat 6061 tatcaatgag gaagcatgcg atccacccga caacgacaaa ggctatccgg gcaattgtgg 6121 ttcagcgacc gttggaataa cgtttctcct ctcataccta gttataagct ttttgatagt 6181 tattaatatg tacattgctg tcattctcga gaactatagt caggccaccg aggacgtgca 6241 agagggtcta accgacgacg actacgacat gtactacgag atctggcagc aattcgatcc 6301 ggagggcacc cagtatatac gctacgacca gctgtccgaa ttcctggacg tgctggagcc 6361 cccgctgcag atccataagc cgaacaagta caagatcata tcgatggaca tacccatctg 6421 tcgcggcgac ctcatgtact gtgtcgacat cctcgacgcc ctcacgaaag acttctttgc 6481 gcgcaagggc aatccgattg aggagacggg cgagatcggt gagatagccg cccgtccgga 6541 cacggagggc tatgagcccg tctcatcgac gctgtggcgc cagcgggagg agtactgtgc 6601 ccgtctcatc cagcacgcct ggcggaagca caaggcgcgc ggcgagggcg gtggtggtgg 6661 tggtgggtcc ttcgagccgg atccggatca ggtcgatggc gatggtggtg gcgatccgga 6721 tgccggggag cctgcaaacg acgaaccggc ggatgggatg gctgaggccc ccgcaggagg 6781 aggaggagga ggaggaggag gagatggtag tgttaatggt ggaggaactg gaactggaac 6841 tggagacgga gctgccgatg ctgccgacga gagcaatgta aatagtccgg gtgaggatgc 6901 agcgtcggcg gcagcaggag cggcgacagg agcgacggcg ggaagtcccg gggcgggcag 6961 cgccggacga cagaccgccg ttctcgtgga gagcgacggg ttcgtgacga agaacggcca 7021 caaggtggtc atccactcgc gatcgccgag catcacgtcg cgcacggcgg atgtctgagc 7081 caggcctcgc ccccccctcc aagatgcacg cgagtattag catgagtacg tgttggatgt 7141 tgcatgttgc gtgttgcgcg ttgggtgctt aaccaatcca gtgcgtcatg tgcaactaaa 7201 cagtgagcta acaacaacag cgaacaaggc gaacaacaag cataattttc tgctatatat 7261 aatgaaagta caccatacaa caaaacaatc gaaacaaacc aacaacagta acaacatcat 7321 caagagaaca accacaacaa caacagtaac aacaatcgat gaaataacga agaagaacaa 7381 caacaacacc agtgtaatgt ctttgagtta caaaacatac atacatacat atacatacta 7441 tatatttgta tacccgcatt attcagttaa cgagtcagca accaacaaca atcatactta 7501 agctaaacaa ccgaaatgtc gaaatatttt gtaagcagct cgtagtccaa tccatttagg 7561 cgttttttcc aaaccaaaca atttgcctaa gcaggtggaa gaagaagtaa aacatcaaca 7621 cacccacact agagcttgaa aatgatcgat aaataccgat tcgataatat cgatgttttc 7681 aaggcaaaac acatatttaa tatcgagaaa gtgcaaactg tcgatatttt ccaagctcta 7741 acatacacac aaaacccaca cacaacacac tcacacataa ccataaacaa atataatccc 7801 aaaaaacaaa aaaccaaaac cgataacaaa gttaaagaac gatgaacaag ctctaaaaat 7861 tgtatttgcc agtagtggga caacaaacaa cacgcttgat ttaattaact accaaac