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LOCUS XM_017144168 7938 bp mRNA linear INV 09-DEC-2024 paralytic (para), transcript variant X27, mRNA. ACCESSION XM_017144168 VERSION XM_017144168.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017144168.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7938 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..7938 /gene="para" /note="sodium voltage-gated channel paralytic; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins" /db_xref="GeneID:108059094" CDS 785..7099 /gene="para" /codon_start=1 /product="sodium channel protein para isoform X27" /protein_id="XP_016999657.2" /db_xref="GeneID:108059094" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEVIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLEDIDPFYSNVL TFVVVSKGKDIFRFSASKAMWMLDPFNPIRRVAIYILVHPLFSLFIITTILVNCILMI MPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDFVVIALAYVTM GIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFAL MGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWDYHNRNSSNWYSEDEGISFPLCGNIS GAGQCDDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDLYQLVLRAAGP WHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIREAEEAAAAKA AKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEKGNDDNNKEKM SIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTYTIRNGRGRFGIPGSDRKPLVLS TYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLGSRHSSYTSHQSRISYTSHGD LLGGMAVMGVSTMTKESKLRNRNTRNQSVGATNGGTTCLDTNHKLEHRDYEIGLECTD EAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDRGVSVYYFPTED DDEDGPTFKDKALEVILKGIDVFCVWDCCWVWLKLQEWISLIVFDPFVELFITLCIVV NTMFMAMDHHDMNKEMERVLKSGNYFFTATFAIEATMKLCAMSPKYYFQEGWNIFDFI IVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISIMGRTMGALGNLTFV LCIIIFIFAVMGMQLFGKNYHDHKDRFPDGDLPRWNFTDFMHSFMIVFRVLCGEWIES MWDCMYVGDVSCIPFFLATVVIGNLVVLNLFLALLLSNFGSSSLSAPTADNDTNKIAE AFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSGKGVCRCISAEHGDNELELGHD EILADGLIKKGIKEQTQLEVAIGDGMEFTIHGDMKNNKPKKSKYLNNATDDDTASINS YGSHKNRPFKDESHKGSAETMEGEEKRDASKEDLGLDEELDEEGECEEGPLDGDIIIH AHDEDILDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAV ITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTN AWCWLDFVIVMLSLINLAAVWSGADDVPAFRSMRTLRALRPLRAVSRWEGMKVVVNAL VQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESE NYTWVNSAMNFDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLY FVFFIIFGSFFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKP LKAIPRPRWRPQAIVFEIVTDKKFDIIIMLFIGLNMFTMTLDRYDASDTYNAVLDYLN AIFVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLL RVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFM HVKEKSGINDVYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGN CGSATVGITFLLSYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQ QFDPEGTQYIRYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDAL TKDFFARKGNPIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKA RGEGGGGGGGSFEPDPDQVDGDGGGDPDAGEPANDEPADGMAEAPAGGGGGGGGGDGS VNGGGTGTGTGDGAADAADESNVNSPGEDAASAAAGAATGATAGSPGAGSAGRQTAVL VESDGFVTKNGHKVVIHSRSPSITSRTADV" misc_feature 1205..2059 /gene="para" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 2408..2908 /gene="para" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 3137..3772 /gene="para" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3848..4537 /gene="para" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4547..5362 /gene="para" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5330..5488 /gene="para" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 5375..5386 /gene="para" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 5510..6262 /gene="para" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 6293..6436 /gene="para" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acacgcgctg cggcagctga cagtttcagt aaaccacgga gacgaacgga ttacggctct 61 gggaacaaaa cgcaacgttt gatgaaaatt tttggcaact cgtcgcgtcg tcttggttgt 121 tgttaaccac atcctgctaa cgccaaagtc cgaaaataaa attcaaccca aatacccaaa 181 aataacacag atcaaacaaa caaagcaaaa aaaaagcaaa caaaataaca aaaaaaaacc 241 aaaaaaaaaa acaaacaaaa aattcatctt ctacttgttc taccgcttca actttattcg 301 tcttcgtctc cgtaataaat atataaaaag tatatacata tatatatata tatatatgca 361 tatgtgtgtg agtgcgtcgc gtgtgtgttg gtgcctgtaa atgtgtgagc cacaacaaca 421 acaacagcag cagcagccag agccagagca acaaccacag cagcagcaac aacaacaaca 481 acaacagtag ttaacagcag caacaattct tagcagcaat aacaatacaa gcaagcacca 541 ccacaacaac aagagcagca acaacaccaa aaacagccac aatagcaatc acaataacaa 601 catcaaagga tagagcgagc agccaagcac aacatcgatt gacatcgatt aacgcatcgt 661 gctaagcggc gggcgctaat cgaacatggc gcctcggata tagttgtagc tttaatgtag 721 caggcgacat ccatgtgcct catgccttgg aaatctaagg ctctcatcgt tggccgcata 781 gacaatgaca gaagattccg actcgatatc tgaggaagaa cgcagtttgt tccgtccctt 841 tacccgcgaa tcattggtgc aaatcgaaca acgcattgcc gctgaacatg aaaagcagaa 901 ggagctggaa agaaagagag ccgagggaga ggtgatccga tatgatgacg aggacgagga 961 tgaaggtcca caaccggatc ctacacttga acagggtgtg ccaatacctg ttcgattgca 1021 gggcagcttc ccgccggaat tggcctccac tcctctcgag gatatcgatc ccttctacag 1081 caatgtactg acattcgtag ttgtaagcaa aggaaaagat atttttcgct tttctgcatc 1141 aaaagcaatg tggatgctcg atccattcaa tccgatacgt cgtgtggcca tttacattct 1201 agtgcatcca ttattttccc tattcatcat caccacaatt ctcgtcaact gcatcctgat 1261 gataatgccg acaacgccca cggttgagtc cactgaggtg atattcaccg gaatctacac 1321 atttgaatca gctgttaaag tgatggcacg aggtttcatt ttatgcccgt ttacgtatct 1381 tagagatgca tggaattggc tggacttcgt agtaatagct ttagcttatg tgaccatggg 1441 tatagattta ggtaatctag cagccttgcg aacgtttagg gtgctgcgag cgcttaaaac 1501 cgtagccatt gtgccaggct tgaagaccat cgtcggcgcc gtcatcgaat cggtgaagaa 1561 tctgcgcgat gtgataatcc tcaccatgtt ctccctgtcg gtcttcgcgc tgatgggcct 1621 gcagatctac atgggcgtgc tcacgcagaa gtgcatcaag aagttcccgc tggacggctc 1681 ctggggcaat ctgaccgacg agaactggga ctatcacaat cgcaacagct ccaattggta 1741 ctcggaggac gagggcatct catttccgct gtgcggcaat atatccggcg cggggcaatg 1801 cgacgatgac tacgtgtgtc tgcaggggtt tgggccgaat ccgaactacg gctacaccag 1861 cttcgattca ttcggctggg ccttcctgtc cgccttccgg ctgatgacac aggacttctg 1921 ggaggacctc taccagctgg tgttgcgcgc cgccggacca tggcacatgc tgttctttat 1981 agtcatcatc ttcctaggtt cattctatct tgtgaatttg attttggcca ttgttgccat 2041 gtcgtatgac gaattgcaaa agaaggccga agaagaagag gctgccgaag aggaggcgat 2101 acgtgaagcg gaggaggctg ccgccgccaa agctgccaag ctggaggagc gggccaatgc 2161 gcaggctcag gcagcagcgg atgcggctgc cgccgaagag gctgcactgc atccggagat 2221 ggccaagagt ccgacgtatt cgtgcatcag ctatgagctt ttcgttggcg gcgagaaggg 2281 caacgatgac aacaacaagg agaagatgtc cattcgcagc gtcgaggtgg agtcggagtc 2341 ggtgagcgtt atacaaagac aaccagcacc taccacagca caccaagcta ccaaagttcg 2401 taaagtgagc acgtacacga tacggaacgg acgtggccgc tttggtatac ccggtagcga 2461 tcgcaagccg ttggtattgt caacatatca ggatgcccag cagcacttgc cctatgccga 2521 cgactcgaat gccgtcaccc cgatgtccga ggagaacggg gccatcatag tgcccgtgta 2581 ctatggcaac ctaggctctc ggcactcatc gtatacctcg catcagtccc gaatatcgta 2641 tacctcacat ggcgatctac tcggcggcat ggccgtcatg ggcgtcagca caatgaccaa 2701 ggagagcaaa ttgcgcaacc gcaacacacg caatcaatca gtgggcgcca ccaatggcgg 2761 caccacctgc ctggacacca atcacaagct cgagcatcgc gactacgaaa tcggtctgga 2821 gtgcacggac gaagctggca agattaaaca tcatgacaat ccttttatcg agcccgtcca 2881 gacacaaacg gtggtcgaca tgaaagatgt gatggtcctg aatgacatca tcgaacaggc 2941 cgctggtcgg cacagtcggg caagcgatcg cggtgtctcc gtttactatt ttccaacaga 3001 ggacgatgac gaggacgggc cgacgttcaa agacaaggca ctcgaagtga tcctaaaggg 3061 catcgatgtg ttttgtgtgt gggactgttg ctgggtttgg ttgaaattgc aggagtggat 3121 ctcgctgatc gtcttcgatc ccttcgtcga gctcttcatc acgctgtgca ttgtggtcaa 3181 cacgatgttc atggcgatgg atcaccacga tatgaacaag gagatggagc gcgtgctcaa 3241 gagtggcaac tatttcttca cggccacctt tgccatcgag gccaccatga agctgtgcgc 3301 catgagcccc aagtactatt tccaggaggg ctggaacatc ttcgacttca tcatcgtggc 3361 cctgtcgctt ttggagctgg gtctcgaggg cgtccagggc ctgtccgtct tgcgttcgtt 3421 tcgattgctg cgtgtattta aattggccaa atcttggcca acacttaatt tactcatttc 3481 gattatggga cgcaccatgg gcgctttggg taatctgaca tttgtacttt gcattatcat 3541 cttcatcttt gcggtgatgg gaatgcaact gttcggaaag aattatcatg atcacaagga 3601 ccgtttcccg gatggcgacc tgccgcgctg gaacttcacc gactttatgc acagcttcat 3661 gatcgtgttc cgggtgctct gcggcgaatg gatcgagtcc atgtgggact gtatgtacgt 3721 gggcgatgtc tcgtgcattc ccttcttctt ggccaccgtt gtcatcggca atcttgtggt 3781 acttaacctt ttcttagcct tgcttttgtc caattttggc tcatctagct tatcagcgcc 3841 gactgccgat aacgatacga ataaaatagc cgaggccttc aatcgaattg gccgatttaa 3901 aagttgggtt aagcgtaata ttgctgattg tttcaagtta atacgtaaca aattgacaaa 3961 tcaaataagt gatcaaccat caggcaaagg cgtttgtcgt tgtatatctg cagagcatgg 4021 tgacaacgaa ctggagctgg ggcacgacga gatcctcgcc gatggcctga tcaagaaggg 4081 aatcaaggag cagacgcaac tggaggtggc catcggggat ggcatggagt tcacgataca 4141 cggcgacatg aagaacaaca agccgaagaa atccaaatat ctaaataacg caacggacga 4201 cgacactgcc agcattaact catatggtag ccataagaat cgaccattca aggacgagag 4261 ccacaagggc agcgccgaga cgatggaggg cgaggagaag cgcgacgcca gcaaggagga 4321 tttaggtctc gacgaggaac tggacgagga gggcgaatgc gaggagggcc cgctcgacgg 4381 tgatatcatt attcatgcac acgacgagga tatactcgat gaatatccag ctgattgctg 4441 ccccgattcg tactataaga aatttccgat cttagccggt gacgatgact cgccgttctg 4501 gcaaggatgg ggcaatttac gactgaaaac ttttcaatta attgaaaata aatattttga 4561 aacagctgtt atcactatga ttttaatgag tagcttagct ttggcattag aagatgtaca 4621 tctgccacaa agacccatac tgcaggatat tttatactat atggacagaa tatttacggt 4681 tatattcttc ttggaaatgt taatcaagtg gttggcgctc ggcttcaaag tgtacttcac 4741 caacgcgtgg tgttggctcg atttcgtgat tgtcatgctg tcgctaatta atttggccgc 4801 ggtctggtcc ggggccgacg atgtgcccgc ctttcgctcg atgcgaactc tgcgcgccct 4861 gcgacctctg cgggcagttt cgcgctggga gggcatgaaa gtcgtcgtta atgcgctggt 4921 acaagctata ccgtccatct tcaatgtgct attggtgtgt ctaatatttt ggctaatttt 4981 tgccataatg ggtgtacagc tttttgctgg aaaatatttt aagtgcgagg acatgaacgg 5041 cacgaagctc agccacgaga tcataccaaa tcgcaatgcc tgcgagagcg agaactacac 5101 gtgggtgaat tcagcaatga atttcgatca tgtaggtaac gcgtatctgt gccttttcca 5161 agtggccacc ttcaaaggct ggatacaaat aatgaacgat gctatcgatt cacgagaggt 5221 ggacaagcaa ccaattcgtg aaacgaacat ctacatgtat ttatatttcg tattcttcat 5281 catatttgga tcatttttca cactcaatct gttcattggt gttatcattg ataattttaa 5341 tgagcaaaag aaaaaagcag gtggatcatt agaaatgttc atgacagaag atcagaaaaa 5401 gtactataat gctatgaaaa agatgggctc taaaaaacca ttaaaagcca ttccaagacc 5461 aaggtggcga ccacaagcaa tagtctttga aatagtaacc gataagaaat tcgatataat 5521 cattatgtta ttcattggtc tgaacatgtt caccatgacc ctcgatcgtt acgatgcgtc 5581 ggacacgtac aacgcggtcc tagactatct caatgcgata ttcgtagtta ttttcagttc 5641 cgaatgtcta ttaaaaatat tcgctttacg atatcactat tttattgagc catggaattt 5701 atttgatgta gtagttgtca ttttatccat cttaggtctc gtacttagcg atattatcga 5761 gaagtacttc gtgtcgccga ccctgctccg agtggtgcgt gtggcgaaag tgggtcgagt 5821 cctgcgactg gtgaagggcg ccaagggcat caggacactg ctattcgcgt tggccatgtc 5881 gctgccggcc ctcttcaaca tctgcctgct gctgttcctg gtcatgttca tcttcgccat 5941 cttcggcatg tcgttcttca tgcacgtgaa ggagaagagc ggcatcaacg acgtctacaa 6001 cttcaagacc tttggtcaga gcatgatcct gctctttcag atgtcgacgt cagccggttg 6061 ggatggtgta ctggacgcca ttatcaatga ggaagcatgc gatccacccg acaacgacaa 6121 aggctatccg ggcaattgtg gttcagcgac cgttggaata acgtttctcc tctcatacct 6181 agttataagc tttttgatag ttattaatat gtacattgct gtcattctcg agaactatag 6241 tcaggccacc gaggacgtgc aagagggtct aaccgacgac gactacgaca tgtactacga 6301 gatctggcag caattcgatc cggagggcac ccagtatata cgctacgacc agctgtccga 6361 attcctggac gtgctggagc ccccgctgca gatccataag ccgaacaagt acaagatcat 6421 atcgatggac atacccatct gtcgcggcga cctcatgtac tgtgtcgaca tcctcgacgc 6481 cctcacgaaa gacttctttg cgcgcaaggg caatccgatt gaggagacgg gcgagatcgg 6541 tgagatagcc gcccgtccgg acacggaggg ctatgagccc gtctcatcga cgctgtggcg 6601 ccagcgggag gagtactgtg cccgtctcat ccagcacgcc tggcggaagc acaaggcgcg 6661 cggcgagggc ggtggtggtg gtggtgggtc cttcgagccg gatccggatc aggtcgatgg 6721 cgatggtggt ggcgatccgg atgccgggga gcctgcaaac gacgaaccgg cggatgggat 6781 ggctgaggcc cccgcaggag gaggaggagg aggaggagga ggagatggta gtgttaatgg 6841 tggaggaact ggaactggaa ctggagacgg agctgccgat gctgccgacg agagcaatgt 6901 aaatagtccg ggtgaggatg cagcgtcggc ggcagcagga gcggcgacag gagcgacggc 6961 gggaagtccc ggggcgggca gcgccggacg acagaccgcc gttctcgtgg agagcgacgg 7021 gttcgtgacg aagaacggcc acaaggtggt catccactcg cgatcgccga gcatcacgtc 7081 gcgcacggcg gatgtctgag ccaggcctcg cccccccctc caagatgcac gcgagtatta 7141 gcatgagtac gtgttggatg ttgcatgttg cgtgttgcgc gttgggtgct taaccaatcc 7201 agtgcgtcat gtgcaactaa acagtgagct aacaacaaca gcgaacaagg cgaacaacaa 7261 gcataatttt ctgctatata taatgaaagt acaccataca acaaaacaat cgaaacaaac 7321 caacaacagt aacaacatca tcaagagaac aaccacaaca acaacagtaa caacaatcga 7381 tgaaataacg aagaagaaca acaacaacac cagtgtaatg tctttgagtt acaaaacata 7441 catacataca tatacatact atatatttgt atacccgcat tattcagtta acgagtcagc 7501 aaccaacaac aatcatactt aagctaaaca accgaaatgt cgaaatattt tgtaagcagc 7561 tcgtagtcca atccatttag gcgttttttc caaaccaaac aatttgccta agcaggtgga 7621 agaagaagta aaacatcaac acacccacac tagagcttga aaatgatcga taaataccga 7681 ttcgataata tcgatgtttt caaggcaaaa cacatattta atatcgagaa agtgcaaact 7741 gtcgatattt tccaagctct aacatacaca caaaacccac acacaacaca ctcacacata 7801 accataaaca aatataatcc caaaaaacaa aaaaccaaaa ccgataacaa agttaaagaa 7861 cgatgaacaa gctctaaaaa ttgtatttgc cagtagtggg acaacaaaca acacgcttga 7921 tttaattaac taccaaac