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LOCUS XM_017144164 7968 bp mRNA linear INV 09-DEC-2024 paralytic (para), transcript variant X23, mRNA. ACCESSION XM_017144164 VERSION XM_017144164.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017144164.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7968 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..7968 /gene="para" /note="sodium voltage-gated channel paralytic; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins" /db_xref="GeneID:108059094" CDS 785..7129 /gene="para" /codon_start=1 /product="sodium channel protein para isoform X23" /protein_id="XP_016999653.2" /db_xref="GeneID:108059094" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLEDIDPFYSNVLT FVVVSKGKDIFRFSASKAMWMLDPFNPIRRVAIYILVHPLFSLFIITTILVNCILMIM PTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDFVVIALAYVTMG IDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALM GLQIYMGVLTQKCIKKFPLDGSWGNLTDENWDYHNRNSSNWYSEDEGISFPLCGNISG AGQCDDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDLYQLVLRAAGPW HMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIREAEEAAAAKAA KLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEKGNDDNNKEKMS IRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNIRRGSRSSHKYTI RNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLG SRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNTRNQSVGATNGGTTC LDTNHKLEHRDYEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAA GRHSRASDRGVSVYYFPTEDDDEDGPTFKDKALEVILKGIDVFCVWDCCWVWLKLQEW ISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERVLKSGNYFFTATFAIEATMK LCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTL NLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDHKDRFPDGDLPRWNFT DFMHSFMIVFRVLCGEWIESMWDCMYVGDVSCIPFFLATVVIGNLVVLNLFLALLLSN FGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSEH GDNELELGHDEILADGLIKKGIKEQTQLEVAIGDGMEFTIHGDMKNNKPKKSKYLNNA TDDDTASINSYGSHKNRPFKDESHKGSAETMEGEEKRDASKEDLGLDEELDEEGECEE GPLDGDIIIHAHDEDILDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQL IENKYFETAVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWL ALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRM QGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEI IPNRNACESENYTWVNSAMNFDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPI RETNIYMYLYFVFFIIFGSFFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYN AMKKMGSKKPLKAIPRPRWRPQAIVFEIVTDKKFDIIIMLFIGLNMFTMTLDRYDASD TYNAVLDYLNAIFVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDII EKYFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFI FAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDP PDNDKGYPGNCGSATVGITFLLSYLVISFLIVINMYIAVILENYSQATEDVQEGLTDD DYDMYYEIWQQFDPEGTQYIRYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDL MYCVDILDALTKDFFARKGNPIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARL IQHAWRKHKARGEGGGGGGGSFEPDPDQVDGDGGGDPDAGEPANDEPADGMAEAPAGG GGGGGGGDGSVNGGGTGTGTGDGAADAADESNVNSPGEDAASAAAGAATGATAGSPGA GSAGRQTAVLVESDGFVTKNGHKVVIHSRSPSITSRTADV" misc_feature 1202..2056 /gene="para" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 2411..2968 /gene="para" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 3197..3832 /gene="para" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3908..4567 /gene="para" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4577..5392 /gene="para" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5360..5518 /gene="para" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 5405..5416 /gene="para" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 5540..6292 /gene="para" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 6323..6466 /gene="para" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acacgcgctg cggcagctga cagtttcagt aaaccacgga gacgaacgga ttacggctct 61 gggaacaaaa cgcaacgttt gatgaaaatt tttggcaact cgtcgcgtcg tcttggttgt 121 tgttaaccac atcctgctaa cgccaaagtc cgaaaataaa attcaaccca aatacccaaa 181 aataacacag atcaaacaaa caaagcaaaa aaaaagcaaa caaaataaca aaaaaaaacc 241 aaaaaaaaaa acaaacaaaa aattcatctt ctacttgttc taccgcttca actttattcg 301 tcttcgtctc cgtaataaat atataaaaag tatatacata tatatatata tatatatgca 361 tatgtgtgtg agtgcgtcgc gtgtgtgttg gtgcctgtaa atgtgtgagc cacaacaaca 421 acaacagcag cagcagccag agccagagca acaaccacag cagcagcaac aacaacaaca 481 acaacagtag ttaacagcag caacaattct tagcagcaat aacaatacaa gcaagcacca 541 ccacaacaac aagagcagca acaacaccaa aaacagccac aatagcaatc acaataacaa 601 catcaaagga tagagcgagc agccaagcac aacatcgatt gacatcgatt aacgcatcgt 661 gctaagcggc gggcgctaat cgaacatggc gcctcggata tagttgtagc tttaatgtag 721 caggcgacat ccatgtgcct catgccttgg aaatctaagg ctctcatcgt tggccgcata 781 gacaatgaca gaagattccg actcgatatc tgaggaagaa cgcagtttgt tccgtccctt 841 tacccgcgaa tcattggtgc aaatcgaaca acgcattgcc gctgaacatg aaaagcagaa 901 ggagctggaa agaaagagag ccgagggaga gatccgatat gatgacgagg acgaggatga 961 aggtccacaa ccggatccta cacttgaaca gggtgtgcca atacctgttc gattgcaggg 1021 cagcttcccg ccggaattgg cctccactcc tctcgaggat atcgatccct tctacagcaa 1081 tgtactgaca ttcgtagttg taagcaaagg aaaagatatt tttcgctttt ctgcatcaaa 1141 agcaatgtgg atgctcgatc cattcaatcc gatacgtcgt gtggccattt acattctagt 1201 gcatccatta ttttccctat tcatcatcac cacaattctc gtcaactgca tcctgatgat 1261 aatgccgaca acgcccacgg ttgagtccac tgaggtgata ttcaccggaa tctacacatt 1321 tgaatcagct gttaaagtga tggcacgagg tttcatttta tgcccgttta cgtatcttag 1381 agatgcatgg aattggctgg acttcgtagt aatagcttta gcttatgtga ccatgggtat 1441 agatttaggt aatctagcag ccttgcgaac gtttagggtg ctgcgagcgc ttaaaaccgt 1501 agccattgtg ccaggcttga agaccatcgt cggcgccgtc atcgaatcgg tgaagaatct 1561 gcgcgatgtg ataatcctca ccatgttctc cctgtcggtc ttcgcgctga tgggcctgca 1621 gatctacatg ggcgtgctca cgcagaagtg catcaagaag ttcccgctgg acggctcctg 1681 gggcaatctg accgacgaga actgggacta tcacaatcgc aacagctcca attggtactc 1741 ggaggacgag ggcatctcat ttccgctgtg cggcaatata tccggcgcgg ggcaatgcga 1801 cgatgactac gtgtgtctgc aggggtttgg gccgaatccg aactacggct acaccagctt 1861 cgattcattc ggctgggcct tcctgtccgc cttccggctg atgacacagg acttctggga 1921 ggacctctac cagctggtgt tgcgcgccgc cggaccatgg cacatgctgt tctttatagt 1981 catcatcttc ctaggttcat tctatcttgt gaatttgatt ttggccattg ttgccatgtc 2041 gtatgacgaa ttgcaaaaga aggccgaaga agaagaggct gccgaagagg aggcgatacg 2101 tgaagcggag gaggctgccg ccgccaaagc tgccaagctg gaggagcggg ccaatgcgca 2161 ggctcaggca gcagcggatg cggctgccgc cgaagaggct gcactgcatc cggagatggc 2221 caagagtccg acgtattcgt gcatcagcta tgagcttttc gttggcggcg agaagggcaa 2281 cgatgacaac aacaaggaga agatgtccat tcgcagcgtc gaggtggagt cggagtcggt 2341 gagcgttata caaagacaac cagcacctac cacagcacac caagctacca aagttcgtaa 2401 agtgagcacg acatccttat ccttacctgg ttcaccgttt aacatacgca ggggatcacg 2461 tagttctcac aagtacacga tacggaacgg acgtggccgc tttggtatac ccggtagcga 2521 tcgcaagccg ttggtattgt caacatatca ggatgcccag cagcacttgc cctatgccga 2581 cgactcgaat gccgtcaccc cgatgtccga ggagaacggg gccatcatag tgcccgtgta 2641 ctatggcaac ctaggctctc ggcactcatc gtatacctcg catcagtccc gaatatcgta 2701 tacctcacat ggcgatctac tcggcggcat ggccgtcatg ggcgtcagca caatgaccaa 2761 ggagagcaaa ttgcgcaacc gcaacacacg caatcaatca gtgggcgcca ccaatggcgg 2821 caccacctgc ctggacacca atcacaagct cgagcatcgc gactacgaaa tcggtctgga 2881 gtgcacggac gaagctggca agattaaaca tcatgacaat ccttttatcg agcccgtcca 2941 gacacaaacg gtggtcgaca tgaaagatgt gatggtcctg aatgacatca tcgaacaggc 3001 cgctggtcgg cacagtcggg caagcgatcg cggtgtctcc gtttactatt ttccaacaga 3061 ggacgatgac gaggacgggc cgacgttcaa agacaaggca ctcgaagtga tcctaaaggg 3121 catcgatgtg ttttgtgtgt gggactgttg ctgggtttgg ttgaaattgc aggagtggat 3181 ctcgctgatc gtcttcgatc ccttcgtcga gctcttcatc acgctgtgca ttgtggtcaa 3241 cacgatgttc atggcgatgg atcaccacga tatgaacaag gagatggagc gcgtgctcaa 3301 gagtggcaac tatttcttca cggccacctt tgccatcgag gccaccatga agctgtgcgc 3361 catgagcccc aagtactatt tccaggaggg ctggaacatc ttcgacttca tcatcgtggc 3421 cctgtcgctt ttggagctgg gtctcgaggg cgtccagggc ctgtccgtct tgcgttcgtt 3481 tcgattgctg cgtgtattta aattggccaa atcttggcca acacttaatt tactcatttc 3541 gattatggga cgcaccatgg gcgctttggg taatctgaca tttgtacttt gcattatcat 3601 cttcatcttt gcggtgatgg gaatgcaact gttcggaaag aattatcatg atcacaagga 3661 ccgtttcccg gatggcgacc tgccgcgctg gaacttcacc gactttatgc acagcttcat 3721 gatcgtgttc cgggtgctct gcggcgaatg gatcgagtcc atgtgggact gtatgtacgt 3781 gggcgatgtc tcgtgcattc ccttcttctt ggccaccgtt gtcatcggca atcttgtggt 3841 acttaacctt ttcttagcct tgcttttgtc caattttggc tcatctagct tatcagcgcc 3901 gactgccgat aacgatacga ataaaatagc cgaggccttc aatcgaattg gccgatttaa 3961 aagttgggtt aagcgtaata ttgctgattg tttcaagtta atacgtaaca aattgacaaa 4021 tcaaataagt gatcaaccat cagagcatgg tgacaacgaa ctggagctgg ggcacgacga 4081 gatcctcgcc gatggcctga tcaagaaggg aatcaaggag cagacgcaac tggaggtggc 4141 catcggggat ggcatggagt tcacgataca cggcgacatg aagaacaaca agccgaagaa 4201 atccaaatat ctaaataacg caacggacga cgacactgcc agcattaact catatggtag 4261 ccataagaat cgaccattca aggacgagag ccacaagggc agcgccgaga cgatggaggg 4321 cgaggagaag cgcgacgcca gcaaggagga tttaggtctc gacgaggaac tggacgagga 4381 gggcgaatgc gaggagggcc cgctcgacgg tgatatcatt attcatgcac acgacgagga 4441 tatactcgat gaatatccag ctgattgctg ccccgattcg tactataaga aatttccgat 4501 cttagccggt gacgatgact cgccgttctg gcaaggatgg ggcaatttac gactgaaaac 4561 ttttcaatta attgaaaata aatattttga aacagctgtt atcactatga ttttaatgag 4621 tagcttagct ttggcattag aagatgtaca tctgccacaa agacccatac tgcaggatat 4681 tttatactat atggacagaa tatttacggt tatattcttc ttggaaatgt taatcaagtg 4741 gttggcgctc ggcttcaaag tgtacttcac caacgcgtgg tgttggctcg atttcgtgat 4801 tgtcatggta tcgcttatca acttcgttgc ttcacttgtt ggagctggtg gtattcaagc 4861 cttcaagact atgcgaacgt taagagcact gagaccacta cgtgccatgt cccgtatgca 4921 gggcatgagg gtcgtcgtta atgcgctggt acaagctata ccgtccatct tcaatgtgct 4981 attggtgtgt ctaatatttt ggctaatttt tgccataatg ggtgtacagc tttttgctgg 5041 aaaatatttt aagtgcgagg acatgaacgg cacgaagctc agccacgaga tcataccaaa 5101 tcgcaatgcc tgcgagagcg agaactacac gtgggtgaat tcagcaatga atttcgatca 5161 tgtaggtaac gcgtatctgt gccttttcca agtggccacc ttcaaaggct ggatacaaat 5221 aatgaacgat gctatcgatt cacgagaggt ggacaagcaa ccaattcgtg aaacgaacat 5281 ctacatgtat ttatatttcg tattcttcat catatttgga tcatttttca cactcaatct 5341 gttcattggt gttatcattg ataattttaa tgagcaaaag aaaaaagcag gtggatcatt 5401 agaaatgttc atgacagaag atcagaaaaa gtactataat gctatgaaaa agatgggctc 5461 taaaaaacca ttaaaagcca ttccaagacc aaggtggcga ccacaagcaa tagtctttga 5521 aatagtaacc gataagaaat tcgatataat cattatgtta ttcattggtc tgaacatgtt 5581 caccatgacc ctcgatcgtt acgatgcgtc ggacacgtac aacgcggtcc tagactatct 5641 caatgcgata ttcgtagtta ttttcagttc cgaatgtcta ttaaaaatat tcgctttacg 5701 atatcactat tttattgagc catggaattt atttgatgta gtagttgtca ttttatccat 5761 cttaggtctc gtacttagcg atattatcga gaagtacttc gtgtcgccga ccctgctccg 5821 agtggtgcgt gtggcgaaag tgggtcgagt cctgcgactg gtgaagggcg ccaagggcat 5881 caggacactg ctattcgcgt tggccatgtc gctgccggcc ctcttcaaca tctgcctgct 5941 gctgttcctg gtcatgttca tcttcgccat cttcggcatg tcgttcttca tgcacgtgaa 6001 ggagaagagc ggcatcaacg acgtctacaa cttcaagacc tttggtcaga gcatgatcct 6061 gctctttcag atgtcgacgt cagccggttg ggatggtgta ctggacgcca ttatcaatga 6121 ggaagcatgc gatccacccg acaacgacaa aggctatccg ggcaattgtg gttcagcgac 6181 cgttggaata acgtttctcc tctcatacct agttataagc tttttgatag ttattaatat 6241 gtacattgct gtcattctcg agaactatag tcaggccacc gaggacgtgc aagagggtct 6301 aaccgacgac gactacgaca tgtactacga gatctggcag caattcgatc cggagggcac 6361 ccagtatata cgctacgacc agctgtccga attcctggac gtgctggagc ccccgctgca 6421 gatccataag ccgaacaagt acaagatcat atcgatggac atacccatct gtcgcggcga 6481 cctcatgtac tgtgtcgaca tcctcgacgc cctcacgaaa gacttctttg cgcgcaaggg 6541 caatccgatt gaggagacgg gcgagatcgg tgagatagcc gcccgtccgg acacggaggg 6601 ctatgagccc gtctcatcga cgctgtggcg ccagcgggag gagtactgtg cccgtctcat 6661 ccagcacgcc tggcggaagc acaaggcgcg cggcgagggc ggtggtggtg gtggtgggtc 6721 cttcgagccg gatccggatc aggtcgatgg cgatggtggt ggcgatccgg atgccgggga 6781 gcctgcaaac gacgaaccgg cggatgggat ggctgaggcc cccgcaggag gaggaggagg 6841 aggaggagga ggagatggta gtgttaatgg tggaggaact ggaactggaa ctggagacgg 6901 agctgccgat gctgccgacg agagcaatgt aaatagtccg ggtgaggatg cagcgtcggc 6961 ggcagcagga gcggcgacag gagcgacggc gggaagtccc ggggcgggca gcgccggacg 7021 acagaccgcc gttctcgtgg agagcgacgg gttcgtgacg aagaacggcc acaaggtggt 7081 catccactcg cgatcgccga gcatcacgtc gcgcacggcg gatgtctgag ccaggcctcg 7141 cccccccctc caagatgcac gcgagtatta gcatgagtac gtgttggatg ttgcatgttg 7201 cgtgttgcgc gttgggtgct taaccaatcc agtgcgtcat gtgcaactaa acagtgagct 7261 aacaacaaca gcgaacaagg cgaacaacaa gcataatttt ctgctatata taatgaaagt 7321 acaccataca acaaaacaat cgaaacaaac caacaacagt aacaacatca tcaagagaac 7381 aaccacaaca acaacagtaa caacaatcga tgaaataacg aagaagaaca acaacaacac 7441 cagtgtaatg tctttgagtt acaaaacata catacataca tatacatact atatatttgt 7501 atacccgcat tattcagtta acgagtcagc aaccaacaac aatcatactt aagctaaaca 7561 accgaaatgt cgaaatattt tgtaagcagc tcgtagtcca atccatttag gcgttttttc 7621 caaaccaaac aatttgccta agcaggtgga agaagaagta aaacatcaac acacccacac 7681 tagagcttga aaatgatcga taaataccga ttcgataata tcgatgtttt caaggcaaaa 7741 cacatattta atatcgagaa agtgcaaact gtcgatattt tccaagctct aacatacaca 7801 caaaacccac acacaacaca ctcacacata accataaaca aatataatcc caaaaaacaa 7861 aaaaccaaaa ccgataacaa agttaaagaa cgatgaacaa gctctaaaaa ttgtatttgc 7921 cagtagtggg acaacaaaca acacgcttga tttaattaac taccaaac