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LOCUS XM_017144154 8010 bp mRNA linear INV 09-DEC-2024 paralytic (para), transcript variant X14, mRNA. ACCESSION XM_017144154 VERSION XM_017144154.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017144154.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8010 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..8010 /gene="para" /note="sodium voltage-gated channel paralytic; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins" /db_xref="GeneID:108059094" CDS 785..7171 /gene="para" /codon_start=1 /product="sodium channel protein para isoform X14" /protein_id="XP_016999643.2" /db_xref="GeneID:108059094" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEVPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPL EDIDPFYSNVLTFVVVSKGKDIFRFSASKAMWMLDPFNPIRRVAIYILVHPLFSLFII TTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLD FVVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVII LTMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWDYHNRNSSNWYSEDE GISFPLCGNISGAGQCDDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWED LYQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGE KGNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNI RRGSRSSHKYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENG AIIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNTRN QSVGATNGGTTCLDTNHKLEHRDYEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKD VMVLNDIIEQAAGRHSRASDRGEDDDEDGPTFKDKALEVILKGIDVFCVWDCCWVWLK LQEWISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERVLKSGNYFFTATFAIE ATMKLCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKS WPTLNLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDHKDRFPDGDLPR WNFTDFMHSFMIVFRVLCGEWIESMWDCMYVGDVSCIPFFLATVVIGNLVVLNLFLAL LLSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQ PSGKGVCRCISAEHGDNELELGHDEILADGLIKKGIKEQTQLEVAIGDGMEFTIHGDM KNNKPKKSKYLNNATDDDTASINSYGSHKNRPFKDESHKGSAETMEGEEKRDASKEDL GLDEELDEEGECEEGPLDGDIIIHAHDEDILDEYPADCCPDSYYKKFPILAGDDDSPF WQGWGNLRLKTFQLIENKYFETAVITMILMSSLALALEDVHLPQRPILQDILYYMDRI FTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMR TLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYF KCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQVATFKGWIQIM NDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLFIGVIIDNFNEQKKKAGGS LEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRPQAIVFEIVTDKKFDIIIMLFIGL NMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSSECLLKIFALRYHYFIEPWNLFDVVV VILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPA LFNICLLLFLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQMSTSAGWD GVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLLSYLVISFLIVINMYIAVILENY SQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEFLDVLEPPLQIHKPNKY KIISMDIPICRGDLMYCVDILDALTKDFFARKGNPIEETGEIGEIAARPDTEGYEPVS STLWRQREEYCARLIQHAWRKHKARGEGGGGGGGSFEPDPDQVDGDGGGDPDAGEPAN DEPADGMAEAPAGGGGGGGGGDGSVNGGGTGTGTGDGAADAADESNVNSPGEDAASAA AGAATGATAGSPGAGSAGRQTAVLVESDGFVTKNGHKVVIHSRSPSITSRTADV" misc_feature 1238..2092 /gene="para" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 2447..3004 /gene="para" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 3209..3844 /gene="para" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3920..4609 /gene="para" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4619..5434 /gene="para" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5402..5560 /gene="para" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 5447..5458 /gene="para" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 5582..6334 /gene="para" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 6365..6508 /gene="para" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acacgcgctg cggcagctga cagtttcagt aaaccacgga gacgaacgga ttacggctct 61 gggaacaaaa cgcaacgttt gatgaaaatt tttggcaact cgtcgcgtcg tcttggttgt 121 tgttaaccac atcctgctaa cgccaaagtc cgaaaataaa attcaaccca aatacccaaa 181 aataacacag atcaaacaaa caaagcaaaa aaaaagcaaa caaaataaca aaaaaaaacc 241 aaaaaaaaaa acaaacaaaa aattcatctt ctacttgttc taccgcttca actttattcg 301 tcttcgtctc cgtaataaat atataaaaag tatatacata tatatatata tatatatgca 361 tatgtgtgtg agtgcgtcgc gtgtgtgttg gtgcctgtaa atgtgtgagc cacaacaaca 421 acaacagcag cagcagccag agccagagca acaaccacag cagcagcaac aacaacaaca 481 acaacagtag ttaacagcag caacaattct tagcagcaat aacaatacaa gcaagcacca 541 ccacaacaac aagagcagca acaacaccaa aaacagccac aatagcaatc acaataacaa 601 catcaaagga tagagcgagc agccaagcac aacatcgatt gacatcgatt aacgcatcgt 661 gctaagcggc gggcgctaat cgaacatggc gcctcggata tagttgtagc tttaatgtag 721 caggcgacat ccatgtgcct catgccttgg aaatctaagg ctctcatcgt tggccgcata 781 gacaatgaca gaagattccg actcgatatc tgaggaagaa cgcagtttgt tccgtccctt 841 tacccgcgaa tcattggtgc aaatcgaaca acgcattgcc gctgaacatg aaaagcagaa 901 ggagctggaa agaaagagag ccgagggaga ggtgccgcaa tatggtcgca agaaaaaaca 961 aaaagaaatc cgatatgatg acgaggacga ggatgaaggt ccacaaccgg atcctacact 1021 tgaacagggt gtgccaatac ctgttcgatt gcagggcagc ttcccgccgg aattggcctc 1081 cactcctctc gaggatatcg atcccttcta cagcaatgta ctgacattcg tagttgtaag 1141 caaaggaaaa gatatttttc gcttttctgc atcaaaagca atgtggatgc tcgatccatt 1201 caatccgata cgtcgtgtgg ccatttacat tctagtgcat ccattatttt ccctattcat 1261 catcaccaca attctcgtca actgcatcct gatgataatg ccgacaacgc ccacggttga 1321 gtccactgag gtgatattca ccggaatcta cacatttgaa tcagctgtta aagtgatggc 1381 acgaggtttc attttatgcc cgtttacgta tcttagagat gcatggaatt ggctggactt 1441 cgtagtaata gctttagctt atgtgaccat gggtatagat ttaggtaatc tagcagcctt 1501 gcgaacgttt agggtgctgc gagcgcttaa aaccgtagcc attgtgccag gcttgaagac 1561 catcgtcggc gccgtcatcg aatcggtgaa gaatctgcgc gatgtgataa tcctcaccat 1621 gttctccctg tcggtcttcg cgctgatggg cctgcagatc tacatgggcg tgctcacgca 1681 gaagtgcatc aagaagttcc cgctggacgg ctcctggggc aatctgaccg acgagaactg 1741 ggactatcac aatcgcaaca gctccaattg gtactcggag gacgagggca tctcatttcc 1801 gctgtgcggc aatatatccg gcgcggggca atgcgacgat gactacgtgt gtctgcaggg 1861 gtttgggccg aatccgaact acggctacac cagcttcgat tcattcggct gggccttcct 1921 gtccgccttc cggctgatga cacaggactt ctgggaggac ctctaccagc tggtgttgcg 1981 cgccgccgga ccatggcaca tgctgttctt tatagtcatc atcttcctag gttcattcta 2041 tcttgtgaat ttgattttgg ccattgttgc catgtcgtat gacgaattgc aaaagaaggc 2101 cgaagaagaa gaggctgccg aagaggaggc gatacgtgaa gcggaggagg ctgccgccgc 2161 caaagctgcc aagctggagg agcgggccaa tgcgcaggct caggcagcag cggatgcggc 2221 tgccgccgaa gaggctgcac tgcatccgga gatggccaag agtccgacgt attcgtgcat 2281 cagctatgag cttttcgttg gcggcgagaa gggcaacgat gacaacaaca aggagaagat 2341 gtccattcgc agcgtcgagg tggagtcgga gtcggtgagc gttatacaaa gacaaccagc 2401 acctaccaca gcacaccaag ctaccaaagt tcgtaaagtg agcacgacat ccttatcctt 2461 acctggttca ccgtttaaca tacgcagggg atcacgtagt tctcacaagt acacgatacg 2521 gaacggacgt ggccgctttg gtatacccgg tagcgatcgc aagccgttgg tattgtcaac 2581 atatcaggat gcccagcagc acttgcccta tgccgacgac tcgaatgccg tcaccccgat 2641 gtccgaggag aacggggcca tcatagtgcc cgtgtactat ggcaacctag gctctcggca 2701 ctcatcgtat acctcgcatc agtcccgaat atcgtatacc tcacatggcg atctactcgg 2761 cggcatggcc gtcatgggcg tcagcacaat gaccaaggag agcaaattgc gcaaccgcaa 2821 cacacgcaat caatcagtgg gcgccaccaa tggcggcacc acctgcctgg acaccaatca 2881 caagctcgag catcgcgact acgaaatcgg tctggagtgc acggacgaag ctggcaagat 2941 taaacatcat gacaatcctt ttatcgagcc cgtccagaca caaacggtgg tcgacatgaa 3001 agatgtgatg gtcctgaatg acatcatcga acaggccgct ggtcggcaca gtcgggcaag 3061 cgatcgcggt gaggacgatg acgaggacgg gccgacgttc aaagacaagg cactcgaagt 3121 gatcctaaag ggcatcgatg tgttttgtgt gtgggactgt tgctgggttt ggttgaaatt 3181 gcaggagtgg atctcgctga tcgtcttcga tcccttcgtc gagctcttca tcacgctgtg 3241 cattgtggtc aacacgatgt tcatggcgat ggatcaccac gatatgaaca aggagatgga 3301 gcgcgtgctc aagagtggca actatttctt cacggccacc tttgccatcg aggccaccat 3361 gaagctgtgc gccatgagcc ccaagtacta tttccaggag ggctggaaca tcttcgactt 3421 catcatcgtg gccctgtcgc ttttggagct gggtctcgag ggcgtccagg gcctgtccgt 3481 cttgcgttcg tttcgattgc tgcgtgtatt taaattggcc aaatcttggc caacacttaa 3541 tttactcatt tcgattatgg gacgcaccat gggcgctttg ggtaatctga catttgtact 3601 ttgcattatc atcttcatct ttgcggtgat gggaatgcaa ctgttcggaa agaattatca 3661 tgatcacaag gaccgtttcc cggatggcga cctgccgcgc tggaacttca ccgactttat 3721 gcacagcttc atgatcgtgt tccgggtgct ctgcggcgaa tggatcgagt ccatgtggga 3781 ctgtatgtac gtgggcgatg tctcgtgcat tcccttcttc ttggccaccg ttgtcatcgg 3841 caatcttgtg gtacttaacc ttttcttagc cttgcttttg tccaattttg gctcatctag 3901 cttatcagcg ccgactgccg ataacgatac gaataaaata gccgaggcct tcaatcgaat 3961 tggccgattt aaaagttggg ttaagcgtaa tattgctgat tgtttcaagt taatacgtaa 4021 caaattgaca aatcaaataa gtgatcaacc atcaggcaaa ggcgtttgtc gttgtatatc 4081 tgcagagcat ggtgacaacg aactggagct ggggcacgac gagatcctcg ccgatggcct 4141 gatcaagaag ggaatcaagg agcagacgca actggaggtg gccatcgggg atggcatgga 4201 gttcacgata cacggcgaca tgaagaacaa caagccgaag aaatccaaat atctaaataa 4261 cgcaacggac gacgacactg ccagcattaa ctcatatggt agccataaga atcgaccatt 4321 caaggacgag agccacaagg gcagcgccga gacgatggag ggcgaggaga agcgcgacgc 4381 cagcaaggag gatttaggtc tcgacgagga actggacgag gagggcgaat gcgaggaggg 4441 cccgctcgac ggtgatatca ttattcatgc acacgacgag gatatactcg atgaatatcc 4501 agctgattgc tgccccgatt cgtactataa gaaatttccg atcttagccg gtgacgatga 4561 ctcgccgttc tggcaaggat ggggcaattt acgactgaaa acttttcaat taattgaaaa 4621 taaatatttt gaaacagctg ttatcactat gattttaatg agtagcttag ctttggcatt 4681 agaagatgta catctgccac aaagacccat actgcaggat attttatact atatggacag 4741 aatatttacg gttatattct tcttggaaat gttaatcaag tggttggcgc tcggcttcaa 4801 agtgtacttc accaacgcgt ggtgttggct cgatttcgtg attgtcatgg tatcgcttat 4861 caacttcgtt gcttcacttg ttggagctgg tggtattcaa gccttcaaga ctatgcgaac 4921 gttaagagca ctgagaccac tacgtgccat gtcccgtatg cagggcatga gggtcgtcgt 4981 taatgcgctg gtacaagcta taccgtccat cttcaatgtg ctattggtgt gtctaatatt 5041 ttggctaatt tttgccataa tgggtgtaca gctttttgct ggaaaatatt ttaagtgcga 5101 ggacatgaac ggcacgaagc tcagccacga gatcatacca aatcgcaatg cctgcgagag 5161 cgagaactac acgtgggtga attcagcaat gaatttcgat catgtaggta acgcgtatct 5221 gtgccttttc caagtggcca ccttcaaagg ctggatacaa ataatgaacg atgctatcga 5281 ttcacgagag gtggacaagc aaccaattcg tgaaacgaac atctacatgt atttatattt 5341 cgtattcttc atcatatttg gatcattttt cacactcaat ctgttcattg gtgttatcat 5401 tgataatttt aatgagcaaa agaaaaaagc aggtggatca ttagaaatgt tcatgacaga 5461 agatcagaaa aagtactata atgctatgaa aaagatgggc tctaaaaaac cattaaaagc 5521 cattccaaga ccaaggtggc gaccacaagc aatagtcttt gaaatagtaa ccgataagaa 5581 attcgatata atcattatgt tattcattgg tctgaacatg ttcaccatga ccctcgatcg 5641 ttacgatgcg tcggacacgt acaacgcggt cctagactat ctcaatgcga tattcgtagt 5701 tattttcagt tccgaatgtc tattaaaaat attcgcttta cgatatcact attttattga 5761 gccatggaat ttatttgatg tagtagttgt cattttatcc atcttaggtc tcgtacttag 5821 cgatattatc gagaagtact tcgtgtcgcc gaccctgctc cgagtggtgc gtgtggcgaa 5881 agtgggtcga gtcctgcgac tggtgaaggg cgccaagggc atcaggacac tgctattcgc 5941 gttggccatg tcgctgccgg ccctcttcaa catctgcctg ctgctgttcc tggtcatgtt 6001 catcttcgcc atcttcggca tgtcgttctt catgcacgtg aaggagaaga gcggcatcaa 6061 cgacgtctac aacttcaaga cctttggtca gagcatgatc ctgctctttc agatgtcgac 6121 gtcagccggt tgggatggtg tactggacgc cattatcaat gaggaagcat gcgatccacc 6181 cgacaacgac aaaggctatc cgggcaattg tggttcagcg accgttggaa taacgtttct 6241 cctctcatac ctagttataa gctttttgat agttattaat atgtacattg ctgtcattct 6301 cgagaactat agtcaggcca ccgaggacgt gcaagagggt ctaaccgacg acgactacga 6361 catgtactac gagatctggc agcaattcga tccggagggc acccagtata tacgctacga 6421 ccagctgtcc gaattcctgg acgtgctgga gcccccgctg cagatccata agccgaacaa 6481 gtacaagatc atatcgatgg acatacccat ctgtcgcggc gacctcatgt actgtgtcga 6541 catcctcgac gccctcacga aagacttctt tgcgcgcaag ggcaatccga ttgaggagac 6601 gggcgagatc ggtgagatag ccgcccgtcc ggacacggag ggctatgagc ccgtctcatc 6661 gacgctgtgg cgccagcggg aggagtactg tgcccgtctc atccagcacg cctggcggaa 6721 gcacaaggcg cgcggcgagg gcggtggtgg tggtggtggg tccttcgagc cggatccgga 6781 tcaggtcgat ggcgatggtg gtggcgatcc ggatgccggg gagcctgcaa acgacgaacc 6841 ggcggatggg atggctgagg cccccgcagg aggaggagga ggaggaggag gaggagatgg 6901 tagtgttaat ggtggaggaa ctggaactgg aactggagac ggagctgccg atgctgccga 6961 cgagagcaat gtaaatagtc cgggtgagga tgcagcgtcg gcggcagcag gagcggcgac 7021 aggagcgacg gcgggaagtc ccggggcggg cagcgccgga cgacagaccg ccgttctcgt 7081 ggagagcgac gggttcgtga cgaagaacgg ccacaaggtg gtcatccact cgcgatcgcc 7141 gagcatcacg tcgcgcacgg cggatgtctg agccaggcct cgcccccccc tccaagatgc 7201 acgcgagtat tagcatgagt acgtgttgga tgttgcatgt tgcgtgttgc gcgttgggtg 7261 cttaaccaat ccagtgcgtc atgtgcaact aaacagtgag ctaacaacaa cagcgaacaa 7321 ggcgaacaac aagcataatt ttctgctata tataatgaaa gtacaccata caacaaaaca 7381 atcgaaacaa accaacaaca gtaacaacat catcaagaga acaaccacaa caacaacagt 7441 aacaacaatc gatgaaataa cgaagaagaa caacaacaac accagtgtaa tgtctttgag 7501 ttacaaaaca tacatacata catatacata ctatatattt gtatacccgc attattcagt 7561 taacgagtca gcaaccaaca acaatcatac ttaagctaaa caaccgaaat gtcgaaatat 7621 tttgtaagca gctcgtagtc caatccattt aggcgttttt tccaaaccaa acaatttgcc 7681 taagcaggtg gaagaagaag taaaacatca acacacccac actagagctt gaaaatgatc 7741 gataaatacc gattcgataa tatcgatgtt ttcaaggcaa aacacatatt taatatcgag 7801 aaagtgcaaa ctgtcgatat tttccaagct ctaacataca cacaaaaccc acacacaaca 7861 cactcacaca taaccataaa caaatataat cccaaaaaac aaaaaaccaa aaccgataac 7921 aaagttaaag aacgatgaac aagctctaaa aattgtattt gccagtagtg ggacaacaaa 7981 caacacgctt gatttaatta actaccaaac