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LOCUS XM_017144150 8034 bp mRNA linear INV 09-DEC-2024 paralytic (para), transcript variant X10, mRNA. ACCESSION XM_017144150 VERSION XM_017144150.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017144150.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8034 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..8034 /gene="para" /note="sodium voltage-gated channel paralytic; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins" /db_xref="GeneID:108059094" CDS 785..7195 /gene="para" /codon_start=1 /product="sodium channel protein para isoform X10" /protein_id="XP_016999639.2" /db_xref="GeneID:108059094" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEVPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPL EDIDPFYSNVLTFVVVSKGKDIFRFSASKAMWMLDPFNPIRRVAIYILVHPLFSLFII TTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLD FVVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVII LTMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWDYHNRNSSNWYSEDE GISFPLCGNISGAGQCDDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWED LYQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGE KGNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNI RRGSRSSHKYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENG AIIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNTRN QSVGATNGGTTCLDTNHKLEHRDYEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKD VMVLNDIIEQAAGRHSRASDRGVSVYYFPTEDDDEDGPTFKDKALEVILKGIDVFCVW DCCWVWLKLQEWISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERVLKSGNYF FTATFAIEATMKLCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLL RVFKLAKSWPTLNLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDHKDR FPDGDLPRWNFTDFMHSFMIVFRVLCGEWIESMWDCMYVGDVSCIPFFLATVVIGNLV VLNLFLALLLSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNK LTNQISDQPSGKGVCRCISAEHGDNELELGHDEILADGLIKKGIKEQTQLEVAIGDGM EFTIHGDMKNNKPKKSKYLNNATDDDTASINSYGSHKNRPFKDESHKGSAETMEGEEK RDASKEDLGLDEELDEEGECEEGPLDGDIIIHAHDEDILDEYPADCCPDSYYKKFPIL AGDDDSPFWQGWGNLRLKTFQLIENKYFETAVITMILMSSLALALEDVHLPQRPILQD ILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVIVMLSLINLAAVWSGADD VPAFRSMRTLRALRPLRAVSRWEGMKVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGV QLFAGKYFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQVAT FKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLFIGVIIDNFNE QKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRPQAIVFEIVTDKKFDI IIMLFIGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSSECLLKIFALRYHYFIEP WNLFDVVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLF ALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQ MSTSAGWDGVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLLSYLVISFLIVINMY IAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEFLDVLEPPL QIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGNPIEETGEIGEIAARPD TEGYEPVSSTLWRQREEYCARLIQHAWRKHKARGEGGGGGGGSFEPDPDQVDGDGGGD PDAGEPANDEPADGMAEAPAGGGGGGGGGDGSVNGGGTGTGTGDGAADAADESNVNSP GEDAASAAAGAATGATAGSPGAGSAGRQTAVLVESDGFVTKNGHKVVIHSRSPSITSR TADV" misc_feature 1238..2092 /gene="para" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 2447..3004 /gene="para" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 3233..3868 /gene="para" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3944..4633 /gene="para" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4643..5458 /gene="para" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5426..5584 /gene="para" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 5471..5482 /gene="para" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 5606..6358 /gene="para" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 6389..6532 /gene="para" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acacgcgctg cggcagctga cagtttcagt aaaccacgga gacgaacgga ttacggctct 61 gggaacaaaa cgcaacgttt gatgaaaatt tttggcaact cgtcgcgtcg tcttggttgt 121 tgttaaccac atcctgctaa cgccaaagtc cgaaaataaa attcaaccca aatacccaaa 181 aataacacag atcaaacaaa caaagcaaaa aaaaagcaaa caaaataaca aaaaaaaacc 241 aaaaaaaaaa acaaacaaaa aattcatctt ctacttgttc taccgcttca actttattcg 301 tcttcgtctc cgtaataaat atataaaaag tatatacata tatatatata tatatatgca 361 tatgtgtgtg agtgcgtcgc gtgtgtgttg gtgcctgtaa atgtgtgagc cacaacaaca 421 acaacagcag cagcagccag agccagagca acaaccacag cagcagcaac aacaacaaca 481 acaacagtag ttaacagcag caacaattct tagcagcaat aacaatacaa gcaagcacca 541 ccacaacaac aagagcagca acaacaccaa aaacagccac aatagcaatc acaataacaa 601 catcaaagga tagagcgagc agccaagcac aacatcgatt gacatcgatt aacgcatcgt 661 gctaagcggc gggcgctaat cgaacatggc gcctcggata tagttgtagc tttaatgtag 721 caggcgacat ccatgtgcct catgccttgg aaatctaagg ctctcatcgt tggccgcata 781 gacaatgaca gaagattccg actcgatatc tgaggaagaa cgcagtttgt tccgtccctt 841 tacccgcgaa tcattggtgc aaatcgaaca acgcattgcc gctgaacatg aaaagcagaa 901 ggagctggaa agaaagagag ccgagggaga ggtgccgcaa tatggtcgca agaaaaaaca 961 aaaagaaatc cgatatgatg acgaggacga ggatgaaggt ccacaaccgg atcctacact 1021 tgaacagggt gtgccaatac ctgttcgatt gcagggcagc ttcccgccgg aattggcctc 1081 cactcctctc gaggatatcg atcccttcta cagcaatgta ctgacattcg tagttgtaag 1141 caaaggaaaa gatatttttc gcttttctgc atcaaaagca atgtggatgc tcgatccatt 1201 caatccgata cgtcgtgtgg ccatttacat tctagtgcat ccattatttt ccctattcat 1261 catcaccaca attctcgtca actgcatcct gatgataatg ccgacaacgc ccacggttga 1321 gtccactgag gtgatattca ccggaatcta cacatttgaa tcagctgtta aagtgatggc 1381 acgaggtttc attttatgcc cgtttacgta tcttagagat gcatggaatt ggctggactt 1441 cgtagtaata gctttagctt atgtgaccat gggtatagat ttaggtaatc tagcagcctt 1501 gcgaacgttt agggtgctgc gagcgcttaa aaccgtagcc attgtgccag gcttgaagac 1561 catcgtcggc gccgtcatcg aatcggtgaa gaatctgcgc gatgtgataa tcctcaccat 1621 gttctccctg tcggtcttcg cgctgatggg cctgcagatc tacatgggcg tgctcacgca 1681 gaagtgcatc aagaagttcc cgctggacgg ctcctggggc aatctgaccg acgagaactg 1741 ggactatcac aatcgcaaca gctccaattg gtactcggag gacgagggca tctcatttcc 1801 gctgtgcggc aatatatccg gcgcggggca atgcgacgat gactacgtgt gtctgcaggg 1861 gtttgggccg aatccgaact acggctacac cagcttcgat tcattcggct gggccttcct 1921 gtccgccttc cggctgatga cacaggactt ctgggaggac ctctaccagc tggtgttgcg 1981 cgccgccgga ccatggcaca tgctgttctt tatagtcatc atcttcctag gttcattcta 2041 tcttgtgaat ttgattttgg ccattgttgc catgtcgtat gacgaattgc aaaagaaggc 2101 cgaagaagaa gaggctgccg aagaggaggc gatacgtgaa gcggaggagg ctgccgccgc 2161 caaagctgcc aagctggagg agcgggccaa tgcgcaggct caggcagcag cggatgcggc 2221 tgccgccgaa gaggctgcac tgcatccgga gatggccaag agtccgacgt attcgtgcat 2281 cagctatgag cttttcgttg gcggcgagaa gggcaacgat gacaacaaca aggagaagat 2341 gtccattcgc agcgtcgagg tggagtcgga gtcggtgagc gttatacaaa gacaaccagc 2401 acctaccaca gcacaccaag ctaccaaagt tcgtaaagtg agcacgacat ccttatcctt 2461 acctggttca ccgtttaaca tacgcagggg atcacgtagt tctcacaagt acacgatacg 2521 gaacggacgt ggccgctttg gtatacccgg tagcgatcgc aagccgttgg tattgtcaac 2581 atatcaggat gcccagcagc acttgcccta tgccgacgac tcgaatgccg tcaccccgat 2641 gtccgaggag aacggggcca tcatagtgcc cgtgtactat ggcaacctag gctctcggca 2701 ctcatcgtat acctcgcatc agtcccgaat atcgtatacc tcacatggcg atctactcgg 2761 cggcatggcc gtcatgggcg tcagcacaat gaccaaggag agcaaattgc gcaaccgcaa 2821 cacacgcaat caatcagtgg gcgccaccaa tggcggcacc acctgcctgg acaccaatca 2881 caagctcgag catcgcgact acgaaatcgg tctggagtgc acggacgaag ctggcaagat 2941 taaacatcat gacaatcctt ttatcgagcc cgtccagaca caaacggtgg tcgacatgaa 3001 agatgtgatg gtcctgaatg acatcatcga acaggccgct ggtcggcaca gtcgggcaag 3061 cgatcgcggt gtctccgttt actattttcc aacagaggac gatgacgagg acgggccgac 3121 gttcaaagac aaggcactcg aagtgatcct aaagggcatc gatgtgtttt gtgtgtggga 3181 ctgttgctgg gtttggttga aattgcagga gtggatctcg ctgatcgtct tcgatccctt 3241 cgtcgagctc ttcatcacgc tgtgcattgt ggtcaacacg atgttcatgg cgatggatca 3301 ccacgatatg aacaaggaga tggagcgcgt gctcaagagt ggcaactatt tcttcacggc 3361 cacctttgcc atcgaggcca ccatgaagct gtgcgccatg agccccaagt actatttcca 3421 ggagggctgg aacatcttcg acttcatcat cgtggccctg tcgcttttgg agctgggtct 3481 cgagggcgtc cagggcctgt ccgtcttgcg ttcgtttcga ttgctgcgtg tatttaaatt 3541 ggccaaatct tggccaacac ttaatttact catttcgatt atgggacgca ccatgggcgc 3601 tttgggtaat ctgacatttg tactttgcat tatcatcttc atctttgcgg tgatgggaat 3661 gcaactgttc ggaaagaatt atcatgatca caaggaccgt ttcccggatg gcgacctgcc 3721 gcgctggaac ttcaccgact ttatgcacag cttcatgatc gtgttccggg tgctctgcgg 3781 cgaatggatc gagtccatgt gggactgtat gtacgtgggc gatgtctcgt gcattccctt 3841 cttcttggcc accgttgtca tcggcaatct tgtggtactt aaccttttct tagccttgct 3901 tttgtccaat tttggctcat ctagcttatc agcgccgact gccgataacg atacgaataa 3961 aatagccgag gccttcaatc gaattggccg atttaaaagt tgggttaagc gtaatattgc 4021 tgattgtttc aagttaatac gtaacaaatt gacaaatcaa ataagtgatc aaccatcagg 4081 caaaggcgtt tgtcgttgta tatctgcaga gcatggtgac aacgaactgg agctggggca 4141 cgacgagatc ctcgccgatg gcctgatcaa gaagggaatc aaggagcaga cgcaactgga 4201 ggtggccatc ggggatggca tggagttcac gatacacggc gacatgaaga acaacaagcc 4261 gaagaaatcc aaatatctaa ataacgcaac ggacgacgac actgccagca ttaactcata 4321 tggtagccat aagaatcgac cattcaagga cgagagccac aagggcagcg ccgagacgat 4381 ggagggcgag gagaagcgcg acgccagcaa ggaggattta ggtctcgacg aggaactgga 4441 cgaggagggc gaatgcgagg agggcccgct cgacggtgat atcattattc atgcacacga 4501 cgaggatata ctcgatgaat atccagctga ttgctgcccc gattcgtact ataagaaatt 4561 tccgatctta gccggtgacg atgactcgcc gttctggcaa ggatggggca atttacgact 4621 gaaaactttt caattaattg aaaataaata ttttgaaaca gctgttatca ctatgatttt 4681 aatgagtagc ttagctttgg cattagaaga tgtacatctg ccacaaagac ccatactgca 4741 ggatatttta tactatatgg acagaatatt tacggttata ttcttcttgg aaatgttaat 4801 caagtggttg gcgctcggct tcaaagtgta cttcaccaac gcgtggtgtt ggctcgattt 4861 cgtgattgtc atgctgtcgc taattaattt ggccgcggtc tggtccgggg ccgacgatgt 4921 gcccgccttt cgctcgatgc gaactctgcg cgccctgcga cctctgcggg cagtttcgcg 4981 ctgggagggc atgaaagtcg tcgttaatgc gctggtacaa gctataccgt ccatcttcaa 5041 tgtgctattg gtgtgtctaa tattttggct aatttttgcc ataatgggtg tacagctttt 5101 tgctggaaaa tattttaagt gcgaggacat gaacggcacg aagctcagcc acgagatcat 5161 accaaatcgc aatgcctgcg agagcgagaa ctacacgtgg gtgaattcag caatgaattt 5221 cgatcatgta ggtaacgcgt atctgtgcct tttccaagtg gccaccttca aaggctggat 5281 acaaataatg aacgatgcta tcgattcacg agaggtggac aagcaaccaa ttcgtgaaac 5341 gaacatctac atgtatttat atttcgtatt cttcatcata tttggatcat ttttcacact 5401 caatctgttc attggtgtta tcattgataa ttttaatgag caaaagaaaa aagcaggtgg 5461 atcattagaa atgttcatga cagaagatca gaaaaagtac tataatgcta tgaaaaagat 5521 gggctctaaa aaaccattaa aagccattcc aagaccaagg tggcgaccac aagcaatagt 5581 ctttgaaata gtaaccgata agaaattcga tataatcatt atgttattca ttggtctgaa 5641 catgttcacc atgaccctcg atcgttacga tgcgtcggac acgtacaacg cggtcctaga 5701 ctatctcaat gcgatattcg tagttatttt cagttccgaa tgtctattaa aaatattcgc 5761 tttacgatat cactatttta ttgagccatg gaatttattt gatgtagtag ttgtcatttt 5821 atccatctta ggtctcgtac ttagcgatat tatcgagaag tacttcgtgt cgccgaccct 5881 gctccgagtg gtgcgtgtgg cgaaagtggg tcgagtcctg cgactggtga agggcgccaa 5941 gggcatcagg acactgctat tcgcgttggc catgtcgctg ccggccctct tcaacatctg 6001 cctgctgctg ttcctggtca tgttcatctt cgccatcttc ggcatgtcgt tcttcatgca 6061 cgtgaaggag aagagcggca tcaacgacgt ctacaacttc aagacctttg gtcagagcat 6121 gatcctgctc tttcagatgt cgacgtcagc cggttgggat ggtgtactgg acgccattat 6181 caatgaggaa gcatgcgatc cacccgacaa cgacaaaggc tatccgggca attgtggttc 6241 agcgaccgtt ggaataacgt ttctcctctc atacctagtt ataagctttt tgatagttat 6301 taatatgtac attgctgtca ttctcgagaa ctatagtcag gccaccgagg acgtgcaaga 6361 gggtctaacc gacgacgact acgacatgta ctacgagatc tggcagcaat tcgatccgga 6421 gggcacccag tatatacgct acgaccagct gtccgaattc ctggacgtgc tggagccccc 6481 gctgcagatc cataagccga acaagtacaa gatcatatcg atggacatac ccatctgtcg 6541 cggcgacctc atgtactgtg tcgacatcct cgacgccctc acgaaagact tctttgcgcg 6601 caagggcaat ccgattgagg agacgggcga gatcggtgag atagccgccc gtccggacac 6661 ggagggctat gagcccgtct catcgacgct gtggcgccag cgggaggagt actgtgcccg 6721 tctcatccag cacgcctggc ggaagcacaa ggcgcgcggc gagggcggtg gtggtggtgg 6781 tgggtccttc gagccggatc cggatcaggt cgatggcgat ggtggtggcg atccggatgc 6841 cggggagcct gcaaacgacg aaccggcgga tgggatggct gaggcccccg caggaggagg 6901 aggaggagga ggaggaggag atggtagtgt taatggtgga ggaactggaa ctggaactgg 6961 agacggagct gccgatgctg ccgacgagag caatgtaaat agtccgggtg aggatgcagc 7021 gtcggcggca gcaggagcgg cgacaggagc gacggcggga agtcccgggg cgggcagcgc 7081 cggacgacag accgccgttc tcgtggagag cgacgggttc gtgacgaaga acggccacaa 7141 ggtggtcatc cactcgcgat cgccgagcat cacgtcgcgc acggcggatg tctgagccag 7201 gcctcgcccc cccctccaag atgcacgcga gtattagcat gagtacgtgt tggatgttgc 7261 atgttgcgtg ttgcgcgttg ggtgcttaac caatccagtg cgtcatgtgc aactaaacag 7321 tgagctaaca acaacagcga acaaggcgaa caacaagcat aattttctgc tatatataat 7381 gaaagtacac catacaacaa aacaatcgaa acaaaccaac aacagtaaca acatcatcaa 7441 gagaacaacc acaacaacaa cagtaacaac aatcgatgaa ataacgaaga agaacaacaa 7501 caacaccagt gtaatgtctt tgagttacaa aacatacata catacatata catactatat 7561 atttgtatac ccgcattatt cagttaacga gtcagcaacc aacaacaatc atacttaagc 7621 taaacaaccg aaatgtcgaa atattttgta agcagctcgt agtccaatcc atttaggcgt 7681 tttttccaaa ccaaacaatt tgcctaagca ggtggaagaa gaagtaaaac atcaacacac 7741 ccacactaga gcttgaaaat gatcgataaa taccgattcg ataatatcga tgttttcaag 7801 gcaaaacaca tatttaatat cgagaaagtg caaactgtcg atattttcca agctctaaca 7861 tacacacaaa acccacacac aacacactca cacataacca taaacaaata taatcccaaa 7921 aaacaaaaaa ccaaaaccga taacaaagtt aaagaacgat gaacaagctc taaaaattgt 7981 atttgccagt agtgggacaa caaacaacac gcttgattta attaactacc aaac