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LOCUS XM_017144148 8043 bp mRNA linear INV 09-DEC-2024 paralytic (para), transcript variant X8, mRNA. ACCESSION XM_017144148 VERSION XM_017144148.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017144148.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8043 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..8043 /gene="para" /note="sodium voltage-gated channel paralytic; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins" /db_xref="GeneID:108059094" CDS 785..7204 /gene="para" /codon_start=1 /product="sodium channel protein para isoform X8" /protein_id="XP_016999637.2" /db_xref="GeneID:108059094" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLEDIDPFYSNVLT FVVVSKGKDIFRFSASKAMWMLDPFNPIRRVAIYILVHPLFSLFIITTILVNCILMIM PTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDFVVIALAYVTMG IDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALM GLQIYMGVLTQKCIKKFPLDGSWGNLTDENWDYHNRNSSNWYSEDEGISFPLCGNISG AGQCDDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDLYQLVLRAAGPW HMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIREAEEAAAAKAA KLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEKGNDDNNKEKMS IRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNIRRGSRSSHKYTI RNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLG SRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNTRNQSVGATNGGTTC LDTNHKLEHRDYEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAA GRHSRASDRGVSVYYFPTEDDDEDGPTFKDKALEVILKGIDVFCVWDCCWVWLKLQEW ISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERVLKSGNYFFTATFAIEATMK LCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTL NLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDHKDRFPDGDLPRWNFT DFMHSFMIVFRVLCGEWIESMWDCMYVGDVSCIPFFLATVVIGNLVVLNLFLALLLSN FGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSEH GDNELELGHDEILADGLIKKGIKEQTQLEVAIGDGMEFTIHGDMKNNKPKKSKYLNNA TMIGNSINHQDNRLEHELNHRGLSLQDDDTASINSYGSHKNRPFKDESHKGSAETMEG EEKRDASKEDLGLDEELDEEGECEEGPLDGDIIIHAHDEDILDEYPADCCPDSYYKKF PILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAVITMILMSSLALALEDVHLPQRPI LQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVIVMVSLINFVASLVG AGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAI MGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQ VATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLFIGVIIDN FNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRPQAIVFEIVTDKK FDIIIMLFIGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSSECLLKIFALRYHYF IEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGRVLRLVKGAKGIRT LLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMIL LFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLLSYLVISFLIVI NMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEFLDVLE PPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGNPIEETGEIGEIAA RPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKARGEGGGGGGGSFEPDPDQVDGDG GGDPDAGEPANDEPADGMAEAPAGGGGGGGGGDGSVNGGGTGTGTGDGAADAADESNV NSPGEDAASAAAGAATGATAGSPGAGSAGRQTAVLVESDGFVTKNGHKVVIHSRSPSI TSRTADV" misc_feature 1202..2056 /gene="para" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 2411..2968 /gene="para" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 3197..3832 /gene="para" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3908..4642 /gene="para" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4652..5467 /gene="para" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5435..5593 /gene="para" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 5480..5491 /gene="para" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 5615..6367 /gene="para" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 6398..6541 /gene="para" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acacgcgctg cggcagctga cagtttcagt aaaccacgga gacgaacgga ttacggctct 61 gggaacaaaa cgcaacgttt gatgaaaatt tttggcaact cgtcgcgtcg tcttggttgt 121 tgttaaccac atcctgctaa cgccaaagtc cgaaaataaa attcaaccca aatacccaaa 181 aataacacag atcaaacaaa caaagcaaaa aaaaagcaaa caaaataaca aaaaaaaacc 241 aaaaaaaaaa acaaacaaaa aattcatctt ctacttgttc taccgcttca actttattcg 301 tcttcgtctc cgtaataaat atataaaaag tatatacata tatatatata tatatatgca 361 tatgtgtgtg agtgcgtcgc gtgtgtgttg gtgcctgtaa atgtgtgagc cacaacaaca 421 acaacagcag cagcagccag agccagagca acaaccacag cagcagcaac aacaacaaca 481 acaacagtag ttaacagcag caacaattct tagcagcaat aacaatacaa gcaagcacca 541 ccacaacaac aagagcagca acaacaccaa aaacagccac aatagcaatc acaataacaa 601 catcaaagga tagagcgagc agccaagcac aacatcgatt gacatcgatt aacgcatcgt 661 gctaagcggc gggcgctaat cgaacatggc gcctcggata tagttgtagc tttaatgtag 721 caggcgacat ccatgtgcct catgccttgg aaatctaagg ctctcatcgt tggccgcata 781 gacaatgaca gaagattccg actcgatatc tgaggaagaa cgcagtttgt tccgtccctt 841 tacccgcgaa tcattggtgc aaatcgaaca acgcattgcc gctgaacatg aaaagcagaa 901 ggagctggaa agaaagagag ccgagggaga gatccgatat gatgacgagg acgaggatga 961 aggtccacaa ccggatccta cacttgaaca gggtgtgcca atacctgttc gattgcaggg 1021 cagcttcccg ccggaattgg cctccactcc tctcgaggat atcgatccct tctacagcaa 1081 tgtactgaca ttcgtagttg taagcaaagg aaaagatatt tttcgctttt ctgcatcaaa 1141 agcaatgtgg atgctcgatc cattcaatcc gatacgtcgt gtggccattt acattctagt 1201 gcatccatta ttttccctat tcatcatcac cacaattctc gtcaactgca tcctgatgat 1261 aatgccgaca acgcccacgg ttgagtccac tgaggtgata ttcaccggaa tctacacatt 1321 tgaatcagct gttaaagtga tggcacgagg tttcatttta tgcccgttta cgtatcttag 1381 agatgcatgg aattggctgg acttcgtagt aatagcttta gcttatgtga ccatgggtat 1441 agatttaggt aatctagcag ccttgcgaac gtttagggtg ctgcgagcgc ttaaaaccgt 1501 agccattgtg ccaggcttga agaccatcgt cggcgccgtc atcgaatcgg tgaagaatct 1561 gcgcgatgtg ataatcctca ccatgttctc cctgtcggtc ttcgcgctga tgggcctgca 1621 gatctacatg ggcgtgctca cgcagaagtg catcaagaag ttcccgctgg acggctcctg 1681 gggcaatctg accgacgaga actgggacta tcacaatcgc aacagctcca attggtactc 1741 ggaggacgag ggcatctcat ttccgctgtg cggcaatata tccggcgcgg ggcaatgcga 1801 cgatgactac gtgtgtctgc aggggtttgg gccgaatccg aactacggct acaccagctt 1861 cgattcattc ggctgggcct tcctgtccgc cttccggctg atgacacagg acttctggga 1921 ggacctctac cagctggtgt tgcgcgccgc cggaccatgg cacatgctgt tctttatagt 1981 catcatcttc ctaggttcat tctatcttgt gaatttgatt ttggccattg ttgccatgtc 2041 gtatgacgaa ttgcaaaaga aggccgaaga agaagaggct gccgaagagg aggcgatacg 2101 tgaagcggag gaggctgccg ccgccaaagc tgccaagctg gaggagcggg ccaatgcgca 2161 ggctcaggca gcagcggatg cggctgccgc cgaagaggct gcactgcatc cggagatggc 2221 caagagtccg acgtattcgt gcatcagcta tgagcttttc gttggcggcg agaagggcaa 2281 cgatgacaac aacaaggaga agatgtccat tcgcagcgtc gaggtggagt cggagtcggt 2341 gagcgttata caaagacaac cagcacctac cacagcacac caagctacca aagttcgtaa 2401 agtgagcacg acatccttat ccttacctgg ttcaccgttt aacatacgca ggggatcacg 2461 tagttctcac aagtacacga tacggaacgg acgtggccgc tttggtatac ccggtagcga 2521 tcgcaagccg ttggtattgt caacatatca ggatgcccag cagcacttgc cctatgccga 2581 cgactcgaat gccgtcaccc cgatgtccga ggagaacggg gccatcatag tgcccgtgta 2641 ctatggcaac ctaggctctc ggcactcatc gtatacctcg catcagtccc gaatatcgta 2701 tacctcacat ggcgatctac tcggcggcat ggccgtcatg ggcgtcagca caatgaccaa 2761 ggagagcaaa ttgcgcaacc gcaacacacg caatcaatca gtgggcgcca ccaatggcgg 2821 caccacctgc ctggacacca atcacaagct cgagcatcgc gactacgaaa tcggtctgga 2881 gtgcacggac gaagctggca agattaaaca tcatgacaat ccttttatcg agcccgtcca 2941 gacacaaacg gtggtcgaca tgaaagatgt gatggtcctg aatgacatca tcgaacaggc 3001 cgctggtcgg cacagtcggg caagcgatcg cggtgtctcc gtttactatt ttccaacaga 3061 ggacgatgac gaggacgggc cgacgttcaa agacaaggca ctcgaagtga tcctaaaggg 3121 catcgatgtg ttttgtgtgt gggactgttg ctgggtttgg ttgaaattgc aggagtggat 3181 ctcgctgatc gtcttcgatc ccttcgtcga gctcttcatc acgctgtgca ttgtggtcaa 3241 cacgatgttc atggcgatgg atcaccacga tatgaacaag gagatggagc gcgtgctcaa 3301 gagtggcaac tatttcttca cggccacctt tgccatcgag gccaccatga agctgtgcgc 3361 catgagcccc aagtactatt tccaggaggg ctggaacatc ttcgacttca tcatcgtggc 3421 cctgtcgctt ttggagctgg gtctcgaggg cgtccagggc ctgtccgtct tgcgttcgtt 3481 tcgattgctg cgtgtattta aattggccaa atcttggcca acacttaatt tactcatttc 3541 gattatggga cgcaccatgg gcgctttggg taatctgaca tttgtacttt gcattatcat 3601 cttcatcttt gcggtgatgg gaatgcaact gttcggaaag aattatcatg atcacaagga 3661 ccgtttcccg gatggcgacc tgccgcgctg gaacttcacc gactttatgc acagcttcat 3721 gatcgtgttc cgggtgctct gcggcgaatg gatcgagtcc atgtgggact gtatgtacgt 3781 gggcgatgtc tcgtgcattc ccttcttctt ggccaccgtt gtcatcggca atcttgtggt 3841 acttaacctt ttcttagcct tgcttttgtc caattttggc tcatctagct tatcagcgcc 3901 gactgccgat aacgatacga ataaaatagc cgaggccttc aatcgaattg gccgatttaa 3961 aagttgggtt aagcgtaata ttgctgattg tttcaagtta atacgtaaca aattgacaaa 4021 tcaaataagt gatcaaccat cagagcatgg tgacaacgaa ctggagctgg ggcacgacga 4081 gatcctcgcc gatggcctga tcaagaaggg aatcaaggag cagacgcaac tggaggtggc 4141 catcggggat ggcatggagt tcacgataca cggcgacatg aagaacaaca agccgaagaa 4201 atccaaatat ctaaataacg caacgatgat tggcaactca attaaccacc aagacaatag 4261 actggaacac gagctaaacc atagaggttt gtccttacag gacgacgaca ctgccagcat 4321 taactcatat ggtagccata agaatcgacc attcaaggac gagagccaca agggcagcgc 4381 cgagacgatg gagggcgagg agaagcgcga cgccagcaag gaggatttag gtctcgacga 4441 ggaactggac gaggagggcg aatgcgagga gggcccgctc gacggtgata tcattattca 4501 tgcacacgac gaggatatac tcgatgaata tccagctgat tgctgccccg attcgtacta 4561 taagaaattt ccgatcttag ccggtgacga tgactcgccg ttctggcaag gatggggcaa 4621 tttacgactg aaaacttttc aattaattga aaataaatat tttgaaacag ctgttatcac 4681 tatgatttta atgagtagct tagctttggc attagaagat gtacatctgc cacaaagacc 4741 catactgcag gatattttat actatatgga cagaatattt acggttatat tcttcttgga 4801 aatgttaatc aagtggttgg cgctcggctt caaagtgtac ttcaccaacg cgtggtgttg 4861 gctcgatttc gtgattgtca tggtatcgct tatcaacttc gttgcttcac ttgttggagc 4921 tggtggtatt caagccttca agactatgcg aacgttaaga gcactgagac cactacgtgc 4981 catgtcccgt atgcagggca tgagggtcgt cgttaatgcg ctggtacaag ctataccgtc 5041 catcttcaat gtgctattgg tgtgtctaat attttggcta atttttgcca taatgggtgt 5101 acagcttttt gctggaaaat attttaagtg cgaggacatg aacggcacga agctcagcca 5161 cgagatcata ccaaatcgca atgcctgcga gagcgagaac tacacgtggg tgaattcagc 5221 aatgaatttc gatcatgtag gtaacgcgta tctgtgcctt ttccaagtgg ccaccttcaa 5281 aggctggata caaataatga acgatgctat cgattcacga gaggtggaca agcaaccaat 5341 tcgtgaaacg aacatctaca tgtatttata tttcgtattc ttcatcatat ttggatcatt 5401 tttcacactc aatctgttca ttggtgttat cattgataat tttaatgagc aaaagaaaaa 5461 agcaggtgga tcattagaaa tgttcatgac agaagatcag aaaaagtact ataatgctat 5521 gaaaaagatg ggctctaaaa aaccattaaa agccattcca agaccaaggt ggcgaccaca 5581 agcaatagtc tttgaaatag taaccgataa gaaattcgat ataatcatta tgttattcat 5641 tggtctgaac atgttcacca tgaccctcga tcgttacgat gcgtcggaca cgtacaacgc 5701 ggtcctagac tatctcaatg cgatattcgt agttattttc agttccgaat gtctattaaa 5761 aatattcgct ttacgatatc actattttat tgagccatgg aatttatttg atgtagtagt 5821 tgtcatttta tccatcttag gtctcgtact tagcgatatt atcgagaagt acttcgtgtc 5881 gccgaccctg ctccgagtgg tgcgtgtggc gaaagtgggt cgagtcctgc gactggtgaa 5941 gggcgccaag ggcatcagga cactgctatt cgcgttggcc atgtcgctgc cggccctctt 6001 caacatctgc ctgctgctgt tcctggtcat gttcatcttc gccatcttcg gcatgtcgtt 6061 cttcatgcac gtgaaggaga agagcggcat caacgacgtc tacaacttca agacctttgg 6121 tcagagcatg atcctgctct ttcagatgtc gacgtcagcc ggttgggatg gtgtactgga 6181 cgccattatc aatgaggaag catgcgatcc acccgacaac gacaaaggct atccgggcaa 6241 ttgtggttca gcgaccgttg gaataacgtt tctcctctca tacctagtta taagcttttt 6301 gatagttatt aatatgtaca ttgctgtcat tctcgagaac tatagtcagg ccaccgagga 6361 cgtgcaagag ggtctaaccg acgacgacta cgacatgtac tacgagatct ggcagcaatt 6421 cgatccggag ggcacccagt atatacgcta cgaccagctg tccgaattcc tggacgtgct 6481 ggagcccccg ctgcagatcc ataagccgaa caagtacaag atcatatcga tggacatacc 6541 catctgtcgc ggcgacctca tgtactgtgt cgacatcctc gacgccctca cgaaagactt 6601 ctttgcgcgc aagggcaatc cgattgagga gacgggcgag atcggtgaga tagccgcccg 6661 tccggacacg gagggctatg agcccgtctc atcgacgctg tggcgccagc gggaggagta 6721 ctgtgcccgt ctcatccagc acgcctggcg gaagcacaag gcgcgcggcg agggcggtgg 6781 tggtggtggt gggtccttcg agccggatcc ggatcaggtc gatggcgatg gtggtggcga 6841 tccggatgcc ggggagcctg caaacgacga accggcggat gggatggctg aggcccccgc 6901 aggaggagga ggaggaggag gaggaggaga tggtagtgtt aatggtggag gaactggaac 6961 tggaactgga gacggagctg ccgatgctgc cgacgagagc aatgtaaata gtccgggtga 7021 ggatgcagcg tcggcggcag caggagcggc gacaggagcg acggcgggaa gtcccggggc 7081 gggcagcgcc ggacgacaga ccgccgttct cgtggagagc gacgggttcg tgacgaagaa 7141 cggccacaag gtggtcatcc actcgcgatc gccgagcatc acgtcgcgca cggcggatgt 7201 ctgagccagg cctcgccccc ccctccaaga tgcacgcgag tattagcatg agtacgtgtt 7261 ggatgttgca tgttgcgtgt tgcgcgttgg gtgcttaacc aatccagtgc gtcatgtgca 7321 actaaacagt gagctaacaa caacagcgaa caaggcgaac aacaagcata attttctgct 7381 atatataatg aaagtacacc atacaacaaa acaatcgaaa caaaccaaca acagtaacaa 7441 catcatcaag agaacaacca caacaacaac agtaacaaca atcgatgaaa taacgaagaa 7501 gaacaacaac aacaccagtg taatgtcttt gagttacaaa acatacatac atacatatac 7561 atactatata tttgtatacc cgcattattc agttaacgag tcagcaacca acaacaatca 7621 tacttaagct aaacaaccga aatgtcgaaa tattttgtaa gcagctcgta gtccaatcca 7681 tttaggcgtt ttttccaaac caaacaattt gcctaagcag gtggaagaag aagtaaaaca 7741 tcaacacacc cacactagag cttgaaaatg atcgataaat accgattcga taatatcgat 7801 gttttcaagg caaaacacat atttaatatc gagaaagtgc aaactgtcga tattttccaa 7861 gctctaacat acacacaaaa cccacacaca acacactcac acataaccat aaacaaatat 7921 aatcccaaaa aacaaaaaac caaaaccgat aacaaagtta aagaacgatg aacaagctct 7981 aaaaattgta tttgccagta gtgggacaac aaacaacacg cttgatttaa ttaactacca 8041 aac