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LOCUS XM_017144141 8085 bp mRNA linear INV 09-DEC-2024 paralytic (para), transcript variant X2, mRNA. ACCESSION XM_017144141 VERSION XM_017144141.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017144141.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8085 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..8085 /gene="para" /note="sodium voltage-gated channel paralytic; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins" /db_xref="GeneID:108059094" CDS 785..7246 /gene="para" /codon_start=1 /product="sodium channel protein para isoform X2" /protein_id="XP_016999630.2" /db_xref="GeneID:108059094" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEVPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPL EDIDPFYSNVLTFVVVSKGKDIFRFSASKAMWMLDPFNPIRRVAIYILVHPLFSLFII TTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLD FVVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVII LTMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWDYHNRNSSNWYSEDE GISFPLCGNISGAGQCDDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWED LYQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGE KGNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNI RRGSRSSHKYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENG AIIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNTRN QSVGATNGGTTCLDTNHKLEHRDYEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKD VMVLNDIIEQAAGRHSRASDRGEDDDEDGPTFKDKALEVILKGIDVFCVWDCCWVWLK LQEWISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERVLKSGNYFFTATFAIE ATMKLCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKS WPTLNLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDHKDRFPDGDLPR WNFTDFMHSFMIVFRVLCGEWIESMWDCMYVGDVSCIPFFLATVVIGNLVVLNLFLAL LLSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQ PSGKGVCRCISAEHGDNELELGHDEILADGLIKKGIKEQTQLEVAIGDGMEFTIHGDM KNNKPKKSKYLNNATMIGNSINHQDNRLEHELNHRGLSLQDDDTASINSYGSHKNRPF KDESHKGSAETMEGEEKRDASKEDLGLDEELDEEGECEEGPLDGDIIIHAHDEDILDE YPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAVITMILMSSL ALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVI VMVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFN VLLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAM NFDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGS FFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRW RPQAIVFEIVTDKKFDIIIMLFIGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSS ECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVG RVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSGIN DVYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGNCGSATVGIT FLLSYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQY IRYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKG NPIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKARGEGGGGGG GSFEPDPDQVDGDGGGDPDAGEPANDEPADGMAEAPAGGGGGGGGGDGSVNGGGTGTG TGDGAADAADESNVNSPGEDAASAAAGAATGATAGSPGAGSAGRQTAVLVESDGFVTK NGHKVVIHSRSPSITSRTADV" misc_feature 1238..2092 /gene="para" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 2447..3004 /gene="para" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 3209..3844 /gene="para" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3920..4684 /gene="para" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4694..5509 /gene="para" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5477..5635 /gene="para" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 5522..5533 /gene="para" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 5657..6409 /gene="para" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 6440..6583 /gene="para" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acacgcgctg cggcagctga cagtttcagt aaaccacgga gacgaacgga ttacggctct 61 gggaacaaaa cgcaacgttt gatgaaaatt tttggcaact cgtcgcgtcg tcttggttgt 121 tgttaaccac atcctgctaa cgccaaagtc cgaaaataaa attcaaccca aatacccaaa 181 aataacacag atcaaacaaa caaagcaaaa aaaaagcaaa caaaataaca aaaaaaaacc 241 aaaaaaaaaa acaaacaaaa aattcatctt ctacttgttc taccgcttca actttattcg 301 tcttcgtctc cgtaataaat atataaaaag tatatacata tatatatata tatatatgca 361 tatgtgtgtg agtgcgtcgc gtgtgtgttg gtgcctgtaa atgtgtgagc cacaacaaca 421 acaacagcag cagcagccag agccagagca acaaccacag cagcagcaac aacaacaaca 481 acaacagtag ttaacagcag caacaattct tagcagcaat aacaatacaa gcaagcacca 541 ccacaacaac aagagcagca acaacaccaa aaacagccac aatagcaatc acaataacaa 601 catcaaagga tagagcgagc agccaagcac aacatcgatt gacatcgatt aacgcatcgt 661 gctaagcggc gggcgctaat cgaacatggc gcctcggata tagttgtagc tttaatgtag 721 caggcgacat ccatgtgcct catgccttgg aaatctaagg ctctcatcgt tggccgcata 781 gacaatgaca gaagattccg actcgatatc tgaggaagaa cgcagtttgt tccgtccctt 841 tacccgcgaa tcattggtgc aaatcgaaca acgcattgcc gctgaacatg aaaagcagaa 901 ggagctggaa agaaagagag ccgagggaga ggtgccgcaa tatggtcgca agaaaaaaca 961 aaaagaaatc cgatatgatg acgaggacga ggatgaaggt ccacaaccgg atcctacact 1021 tgaacagggt gtgccaatac ctgttcgatt gcagggcagc ttcccgccgg aattggcctc 1081 cactcctctc gaggatatcg atcccttcta cagcaatgta ctgacattcg tagttgtaag 1141 caaaggaaaa gatatttttc gcttttctgc atcaaaagca atgtggatgc tcgatccatt 1201 caatccgata cgtcgtgtgg ccatttacat tctagtgcat ccattatttt ccctattcat 1261 catcaccaca attctcgtca actgcatcct gatgataatg ccgacaacgc ccacggttga 1321 gtccactgag gtgatattca ccggaatcta cacatttgaa tcagctgtta aagtgatggc 1381 acgaggtttc attttatgcc cgtttacgta tcttagagat gcatggaatt ggctggactt 1441 cgtagtaata gctttagctt atgtgaccat gggtatagat ttaggtaatc tagcagcctt 1501 gcgaacgttt agggtgctgc gagcgcttaa aaccgtagcc attgtgccag gcttgaagac 1561 catcgtcggc gccgtcatcg aatcggtgaa gaatctgcgc gatgtgataa tcctcaccat 1621 gttctccctg tcggtcttcg cgctgatggg cctgcagatc tacatgggcg tgctcacgca 1681 gaagtgcatc aagaagttcc cgctggacgg ctcctggggc aatctgaccg acgagaactg 1741 ggactatcac aatcgcaaca gctccaattg gtactcggag gacgagggca tctcatttcc 1801 gctgtgcggc aatatatccg gcgcggggca atgcgacgat gactacgtgt gtctgcaggg 1861 gtttgggccg aatccgaact acggctacac cagcttcgat tcattcggct gggccttcct 1921 gtccgccttc cggctgatga cacaggactt ctgggaggac ctctaccagc tggtgttgcg 1981 cgccgccgga ccatggcaca tgctgttctt tatagtcatc atcttcctag gttcattcta 2041 tcttgtgaat ttgattttgg ccattgttgc catgtcgtat gacgaattgc aaaagaaggc 2101 cgaagaagaa gaggctgccg aagaggaggc gatacgtgaa gcggaggagg ctgccgccgc 2161 caaagctgcc aagctggagg agcgggccaa tgcgcaggct caggcagcag cggatgcggc 2221 tgccgccgaa gaggctgcac tgcatccgga gatggccaag agtccgacgt attcgtgcat 2281 cagctatgag cttttcgttg gcggcgagaa gggcaacgat gacaacaaca aggagaagat 2341 gtccattcgc agcgtcgagg tggagtcgga gtcggtgagc gttatacaaa gacaaccagc 2401 acctaccaca gcacaccaag ctaccaaagt tcgtaaagtg agcacgacat ccttatcctt 2461 acctggttca ccgtttaaca tacgcagggg atcacgtagt tctcacaagt acacgatacg 2521 gaacggacgt ggccgctttg gtatacccgg tagcgatcgc aagccgttgg tattgtcaac 2581 atatcaggat gcccagcagc acttgcccta tgccgacgac tcgaatgccg tcaccccgat 2641 gtccgaggag aacggggcca tcatagtgcc cgtgtactat ggcaacctag gctctcggca 2701 ctcatcgtat acctcgcatc agtcccgaat atcgtatacc tcacatggcg atctactcgg 2761 cggcatggcc gtcatgggcg tcagcacaat gaccaaggag agcaaattgc gcaaccgcaa 2821 cacacgcaat caatcagtgg gcgccaccaa tggcggcacc acctgcctgg acaccaatca 2881 caagctcgag catcgcgact acgaaatcgg tctggagtgc acggacgaag ctggcaagat 2941 taaacatcat gacaatcctt ttatcgagcc cgtccagaca caaacggtgg tcgacatgaa 3001 agatgtgatg gtcctgaatg acatcatcga acaggccgct ggtcggcaca gtcgggcaag 3061 cgatcgcggt gaggacgatg acgaggacgg gccgacgttc aaagacaagg cactcgaagt 3121 gatcctaaag ggcatcgatg tgttttgtgt gtgggactgt tgctgggttt ggttgaaatt 3181 gcaggagtgg atctcgctga tcgtcttcga tcccttcgtc gagctcttca tcacgctgtg 3241 cattgtggtc aacacgatgt tcatggcgat ggatcaccac gatatgaaca aggagatgga 3301 gcgcgtgctc aagagtggca actatttctt cacggccacc tttgccatcg aggccaccat 3361 gaagctgtgc gccatgagcc ccaagtacta tttccaggag ggctggaaca tcttcgactt 3421 catcatcgtg gccctgtcgc ttttggagct gggtctcgag ggcgtccagg gcctgtccgt 3481 cttgcgttcg tttcgattgc tgcgtgtatt taaattggcc aaatcttggc caacacttaa 3541 tttactcatt tcgattatgg gacgcaccat gggcgctttg ggtaatctga catttgtact 3601 ttgcattatc atcttcatct ttgcggtgat gggaatgcaa ctgttcggaa agaattatca 3661 tgatcacaag gaccgtttcc cggatggcga cctgccgcgc tggaacttca ccgactttat 3721 gcacagcttc atgatcgtgt tccgggtgct ctgcggcgaa tggatcgagt ccatgtggga 3781 ctgtatgtac gtgggcgatg tctcgtgcat tcccttcttc ttggccaccg ttgtcatcgg 3841 caatcttgtg gtacttaacc ttttcttagc cttgcttttg tccaattttg gctcatctag 3901 cttatcagcg ccgactgccg ataacgatac gaataaaata gccgaggcct tcaatcgaat 3961 tggccgattt aaaagttggg ttaagcgtaa tattgctgat tgtttcaagt taatacgtaa 4021 caaattgaca aatcaaataa gtgatcaacc atcaggcaaa ggcgtttgtc gttgtatatc 4081 tgcagagcat ggtgacaacg aactggagct ggggcacgac gagatcctcg ccgatggcct 4141 gatcaagaag ggaatcaagg agcagacgca actggaggtg gccatcgggg atggcatgga 4201 gttcacgata cacggcgaca tgaagaacaa caagccgaag aaatccaaat atctaaataa 4261 cgcaacgatg attggcaact caattaacca ccaagacaat agactggaac acgagctaaa 4321 ccatagaggt ttgtccttac aggacgacga cactgccagc attaactcat atggtagcca 4381 taagaatcga ccattcaagg acgagagcca caagggcagc gccgagacga tggagggcga 4441 ggagaagcgc gacgccagca aggaggattt aggtctcgac gaggaactgg acgaggaggg 4501 cgaatgcgag gagggcccgc tcgacggtga tatcattatt catgcacacg acgaggatat 4561 actcgatgaa tatccagctg attgctgccc cgattcgtac tataagaaat ttccgatctt 4621 agccggtgac gatgactcgc cgttctggca aggatggggc aatttacgac tgaaaacttt 4681 tcaattaatt gaaaataaat attttgaaac agctgttatc actatgattt taatgagtag 4741 cttagctttg gcattagaag atgtacatct gccacaaaga cccatactgc aggatatttt 4801 atactatatg gacagaatat ttacggttat attcttcttg gaaatgttaa tcaagtggtt 4861 ggcgctcggc ttcaaagtgt acttcaccaa cgcgtggtgt tggctcgatt tcgtgattgt 4921 catggtatcg cttatcaact tcgttgcttc acttgttgga gctggtggta ttcaagcctt 4981 caagactatg cgaacgttaa gagcactgag accactacgt gccatgtccc gtatgcaggg 5041 catgagggtc gtcgttaatg cgctggtaca agctataccg tccatcttca atgtgctatt 5101 ggtgtgtcta atattttggc taatttttgc cataatgggt gtacagcttt ttgctggaaa 5161 atattttaag tgcgaggaca tgaacggcac gaagctcagc cacgagatca taccaaatcg 5221 caatgcctgc gagagcgaga actacacgtg ggtgaattca gcaatgaatt tcgatcatgt 5281 aggtaacgcg tatctgtgcc ttttccaagt ggccaccttc aaaggctgga tacaaataat 5341 gaacgatgct atcgattcac gagaggtgga caagcaacca attcgtgaaa cgaacatcta 5401 catgtattta tatttcgtat tcttcatcat atttggatca tttttcacac tcaatctgtt 5461 cattggtgtt atcattgata attttaatga gcaaaagaaa aaagcaggtg gatcattaga 5521 aatgttcatg acagaagatc agaaaaagta ctataatgct atgaaaaaga tgggctctaa 5581 aaaaccatta aaagccattc caagaccaag gtggcgacca caagcaatag tctttgaaat 5641 agtaaccgat aagaaattcg atataatcat tatgttattc attggtctga acatgttcac 5701 catgaccctc gatcgttacg atgcgtcgga cacgtacaac gcggtcctag actatctcaa 5761 tgcgatattc gtagttattt tcagttccga atgtctatta aaaatattcg ctttacgata 5821 tcactatttt attgagccat ggaatttatt tgatgtagta gttgtcattt tatccatctt 5881 aggtctcgta cttagcgata ttatcgagaa gtacttcgtg tcgccgaccc tgctccgagt 5941 ggtgcgtgtg gcgaaagtgg gtcgagtcct gcgactggtg aagggcgcca agggcatcag 6001 gacactgcta ttcgcgttgg ccatgtcgct gccggccctc ttcaacatct gcctgctgct 6061 gttcctggtc atgttcatct tcgccatctt cggcatgtcg ttcttcatgc acgtgaagga 6121 gaagagcggc atcaacgacg tctacaactt caagaccttt ggtcagagca tgatcctgct 6181 ctttcagatg tcgacgtcag ccggttggga tggtgtactg gacgccatta tcaatgagga 6241 agcatgcgat ccacccgaca acgacaaagg ctatccgggc aattgtggtt cagcgaccgt 6301 tggaataacg tttctcctct catacctagt tataagcttt ttgatagtta ttaatatgta 6361 cattgctgtc attctcgaga actatagtca ggccaccgag gacgtgcaag agggtctaac 6421 cgacgacgac tacgacatgt actacgagat ctggcagcaa ttcgatccgg agggcaccca 6481 gtatatacgc tacgaccagc tgtccgaatt cctggacgtg ctggagcccc cgctgcagat 6541 ccataagccg aacaagtaca agatcatatc gatggacata cccatctgtc gcggcgacct 6601 catgtactgt gtcgacatcc tcgacgccct cacgaaagac ttctttgcgc gcaagggcaa 6661 tccgattgag gagacgggcg agatcggtga gatagccgcc cgtccggaca cggagggcta 6721 tgagcccgtc tcatcgacgc tgtggcgcca gcgggaggag tactgtgccc gtctcatcca 6781 gcacgcctgg cggaagcaca aggcgcgcgg cgagggcggt ggtggtggtg gtgggtcctt 6841 cgagccggat ccggatcagg tcgatggcga tggtggtggc gatccggatg ccggggagcc 6901 tgcaaacgac gaaccggcgg atgggatggc tgaggccccc gcaggaggag gaggaggagg 6961 aggaggagga gatggtagtg ttaatggtgg aggaactgga actggaactg gagacggagc 7021 tgccgatgct gccgacgaga gcaatgtaaa tagtccgggt gaggatgcag cgtcggcggc 7081 agcaggagcg gcgacaggag cgacggcggg aagtcccggg gcgggcagcg ccggacgaca 7141 gaccgccgtt ctcgtggaga gcgacgggtt cgtgacgaag aacggccaca aggtggtcat 7201 ccactcgcga tcgccgagca tcacgtcgcg cacggcggat gtctgagcca ggcctcgccc 7261 ccccctccaa gatgcacgcg agtattagca tgagtacgtg ttggatgttg catgttgcgt 7321 gttgcgcgtt gggtgcttaa ccaatccagt gcgtcatgtg caactaaaca gtgagctaac 7381 aacaacagcg aacaaggcga acaacaagca taattttctg ctatatataa tgaaagtaca 7441 ccatacaaca aaacaatcga aacaaaccaa caacagtaac aacatcatca agagaacaac 7501 cacaacaaca acagtaacaa caatcgatga aataacgaag aagaacaaca acaacaccag 7561 tgtaatgtct ttgagttaca aaacatacat acatacatat acatactata tatttgtata 7621 cccgcattat tcagttaacg agtcagcaac caacaacaat catacttaag ctaaacaacc 7681 gaaatgtcga aatattttgt aagcagctcg tagtccaatc catttaggcg ttttttccaa 7741 accaaacaat ttgcctaagc aggtggaaga agaagtaaaa catcaacaca cccacactag 7801 agcttgaaaa tgatcgataa ataccgattc gataatatcg atgttttcaa ggcaaaacac 7861 atatttaata tcgagaaagt gcaaactgtc gatattttcc aagctctaac atacacacaa 7921 aacccacaca caacacactc acacataacc ataaacaaat ataatcccaa aaaacaaaaa 7981 accaaaaccg ataacaaagt taaagaacga tgaacaagct ctaaaaattg tatttgccag 8041 tagtgggaca acaaacaaca cgcttgattt aattaactac caaac