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LOCUS XM_017144140 8109 bp mRNA linear INV 09-DEC-2024 paralytic (para), transcript variant X1, mRNA. ACCESSION XM_017144140 VERSION XM_017144140.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017144140.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8109 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..8109 /gene="para" /note="sodium voltage-gated channel paralytic; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins" /db_xref="GeneID:108059094" CDS 785..7270 /gene="para" /codon_start=1 /product="sodium channel protein para isoform X1" /protein_id="XP_016999629.2" /db_xref="GeneID:108059094" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEVPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPL EDIDPFYSNVLTFVVVSKGKDIFRFSASKAMWMLDPFNPIRRVAIYILVHPLFSLFII TTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLD FVVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVII LTMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWDYHNRNSSNWYSEDE GISFPLCGNISGAGQCDDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWED LYQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGE KGNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNI RRGSRSSHKYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENG AIIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNTRN QSVGATNGGTTCLDTNHKLEHRDYEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKD VMVLNDIIEQAAGRHSRASDRGVSVYYFPTEDDDEDGPTFKDKALEVILKGIDVFCVW DCCWVWLKLQEWISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERVLKSGNYF FTATFAIEATMKLCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLL RVFKLAKSWPTLNLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDHKDR FPDGDLPRWNFTDFMHSFMIVFRVLCGEWIESMWDCMYVGDVSCIPFFLATVVIGNLV VLNLFLALLLSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNK LTNQISDQPSGKGVCRCISAEHGDNELELGHDEILADGLIKKGIKEQTQLEVAIGDGM EFTIHGDMKNNKPKKSKYLNNATMIGNSINHQDNRLEHELNHRGLSLQDDDTASINSY GSHKNRPFKDESHKGSAETMEGEEKRDASKEDLGLDEELDEEGECEEGPLDGDIIIHA HDEDILDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAVI TMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNA WCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALV QAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESEN YTWVNSAMNFDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYF VFFIIFGSFFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPL KAIPRPRWRPQAIVFEIVTDKKFDIIIMLFIGLNMFTMTLDRYDASDTYNAVLDYLNA IFVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLLR VVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMH VKEKSGINDVYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGNC GSATVGITFLLSYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQ FDPEGTQYIRYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALT KDFFARKGNPIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKAR GEGGGGGGGSFEPDPDQVDGDGGGDPDAGEPANDEPADGMAEAPAGGGGGGGGGDGSV NGGGTGTGTGDGAADAADESNVNSPGEDAASAAAGAATGATAGSPGAGSAGRQTAVLV ESDGFVTKNGHKVVIHSRSPSITSRTADV" misc_feature 1238..2092 /gene="para" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 2447..3004 /gene="para" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 3233..3868 /gene="para" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3944..4708 /gene="para" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4718..5533 /gene="para" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5501..5659 /gene="para" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 5546..5557 /gene="para" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 5681..6433 /gene="para" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 6464..6607 /gene="para" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acacgcgctg cggcagctga cagtttcagt aaaccacgga gacgaacgga ttacggctct 61 gggaacaaaa cgcaacgttt gatgaaaatt tttggcaact cgtcgcgtcg tcttggttgt 121 tgttaaccac atcctgctaa cgccaaagtc cgaaaataaa attcaaccca aatacccaaa 181 aataacacag atcaaacaaa caaagcaaaa aaaaagcaaa caaaataaca aaaaaaaacc 241 aaaaaaaaaa acaaacaaaa aattcatctt ctacttgttc taccgcttca actttattcg 301 tcttcgtctc cgtaataaat atataaaaag tatatacata tatatatata tatatatgca 361 tatgtgtgtg agtgcgtcgc gtgtgtgttg gtgcctgtaa atgtgtgagc cacaacaaca 421 acaacagcag cagcagccag agccagagca acaaccacag cagcagcaac aacaacaaca 481 acaacagtag ttaacagcag caacaattct tagcagcaat aacaatacaa gcaagcacca 541 ccacaacaac aagagcagca acaacaccaa aaacagccac aatagcaatc acaataacaa 601 catcaaagga tagagcgagc agccaagcac aacatcgatt gacatcgatt aacgcatcgt 661 gctaagcggc gggcgctaat cgaacatggc gcctcggata tagttgtagc tttaatgtag 721 caggcgacat ccatgtgcct catgccttgg aaatctaagg ctctcatcgt tggccgcata 781 gacaatgaca gaagattccg actcgatatc tgaggaagaa cgcagtttgt tccgtccctt 841 tacccgcgaa tcattggtgc aaatcgaaca acgcattgcc gctgaacatg aaaagcagaa 901 ggagctggaa agaaagagag ccgagggaga ggtgccgcaa tatggtcgca agaaaaaaca 961 aaaagaaatc cgatatgatg acgaggacga ggatgaaggt ccacaaccgg atcctacact 1021 tgaacagggt gtgccaatac ctgttcgatt gcagggcagc ttcccgccgg aattggcctc 1081 cactcctctc gaggatatcg atcccttcta cagcaatgta ctgacattcg tagttgtaag 1141 caaaggaaaa gatatttttc gcttttctgc atcaaaagca atgtggatgc tcgatccatt 1201 caatccgata cgtcgtgtgg ccatttacat tctagtgcat ccattatttt ccctattcat 1261 catcaccaca attctcgtca actgcatcct gatgataatg ccgacaacgc ccacggttga 1321 gtccactgag gtgatattca ccggaatcta cacatttgaa tcagctgtta aagtgatggc 1381 acgaggtttc attttatgcc cgtttacgta tcttagagat gcatggaatt ggctggactt 1441 cgtagtaata gctttagctt atgtgaccat gggtatagat ttaggtaatc tagcagcctt 1501 gcgaacgttt agggtgctgc gagcgcttaa aaccgtagcc attgtgccag gcttgaagac 1561 catcgtcggc gccgtcatcg aatcggtgaa gaatctgcgc gatgtgataa tcctcaccat 1621 gttctccctg tcggtcttcg cgctgatggg cctgcagatc tacatgggcg tgctcacgca 1681 gaagtgcatc aagaagttcc cgctggacgg ctcctggggc aatctgaccg acgagaactg 1741 ggactatcac aatcgcaaca gctccaattg gtactcggag gacgagggca tctcatttcc 1801 gctgtgcggc aatatatccg gcgcggggca atgcgacgat gactacgtgt gtctgcaggg 1861 gtttgggccg aatccgaact acggctacac cagcttcgat tcattcggct gggccttcct 1921 gtccgccttc cggctgatga cacaggactt ctgggaggac ctctaccagc tggtgttgcg 1981 cgccgccgga ccatggcaca tgctgttctt tatagtcatc atcttcctag gttcattcta 2041 tcttgtgaat ttgattttgg ccattgttgc catgtcgtat gacgaattgc aaaagaaggc 2101 cgaagaagaa gaggctgccg aagaggaggc gatacgtgaa gcggaggagg ctgccgccgc 2161 caaagctgcc aagctggagg agcgggccaa tgcgcaggct caggcagcag cggatgcggc 2221 tgccgccgaa gaggctgcac tgcatccgga gatggccaag agtccgacgt attcgtgcat 2281 cagctatgag cttttcgttg gcggcgagaa gggcaacgat gacaacaaca aggagaagat 2341 gtccattcgc agcgtcgagg tggagtcgga gtcggtgagc gttatacaaa gacaaccagc 2401 acctaccaca gcacaccaag ctaccaaagt tcgtaaagtg agcacgacat ccttatcctt 2461 acctggttca ccgtttaaca tacgcagggg atcacgtagt tctcacaagt acacgatacg 2521 gaacggacgt ggccgctttg gtatacccgg tagcgatcgc aagccgttgg tattgtcaac 2581 atatcaggat gcccagcagc acttgcccta tgccgacgac tcgaatgccg tcaccccgat 2641 gtccgaggag aacggggcca tcatagtgcc cgtgtactat ggcaacctag gctctcggca 2701 ctcatcgtat acctcgcatc agtcccgaat atcgtatacc tcacatggcg atctactcgg 2761 cggcatggcc gtcatgggcg tcagcacaat gaccaaggag agcaaattgc gcaaccgcaa 2821 cacacgcaat caatcagtgg gcgccaccaa tggcggcacc acctgcctgg acaccaatca 2881 caagctcgag catcgcgact acgaaatcgg tctggagtgc acggacgaag ctggcaagat 2941 taaacatcat gacaatcctt ttatcgagcc cgtccagaca caaacggtgg tcgacatgaa 3001 agatgtgatg gtcctgaatg acatcatcga acaggccgct ggtcggcaca gtcgggcaag 3061 cgatcgcggt gtctccgttt actattttcc aacagaggac gatgacgagg acgggccgac 3121 gttcaaagac aaggcactcg aagtgatcct aaagggcatc gatgtgtttt gtgtgtggga 3181 ctgttgctgg gtttggttga aattgcagga gtggatctcg ctgatcgtct tcgatccctt 3241 cgtcgagctc ttcatcacgc tgtgcattgt ggtcaacacg atgttcatgg cgatggatca 3301 ccacgatatg aacaaggaga tggagcgcgt gctcaagagt ggcaactatt tcttcacggc 3361 cacctttgcc atcgaggcca ccatgaagct gtgcgccatg agccccaagt actatttcca 3421 ggagggctgg aacatcttcg acttcatcat cgtggccctg tcgcttttgg agctgggtct 3481 cgagggcgtc cagggcctgt ccgtcttgcg ttcgtttcga ttgctgcgtg tatttaaatt 3541 ggccaaatct tggccaacac ttaatttact catttcgatt atgggacgca ccatgggcgc 3601 tttgggtaat ctgacatttg tactttgcat tatcatcttc atctttgcgg tgatgggaat 3661 gcaactgttc ggaaagaatt atcatgatca caaggaccgt ttcccggatg gcgacctgcc 3721 gcgctggaac ttcaccgact ttatgcacag cttcatgatc gtgttccggg tgctctgcgg 3781 cgaatggatc gagtccatgt gggactgtat gtacgtgggc gatgtctcgt gcattccctt 3841 cttcttggcc accgttgtca tcggcaatct tgtggtactt aaccttttct tagccttgct 3901 tttgtccaat tttggctcat ctagcttatc agcgccgact gccgataacg atacgaataa 3961 aatagccgag gccttcaatc gaattggccg atttaaaagt tgggttaagc gtaatattgc 4021 tgattgtttc aagttaatac gtaacaaatt gacaaatcaa ataagtgatc aaccatcagg 4081 caaaggcgtt tgtcgttgta tatctgcaga gcatggtgac aacgaactgg agctggggca 4141 cgacgagatc ctcgccgatg gcctgatcaa gaagggaatc aaggagcaga cgcaactgga 4201 ggtggccatc ggggatggca tggagttcac gatacacggc gacatgaaga acaacaagcc 4261 gaagaaatcc aaatatctaa ataacgcaac gatgattggc aactcaatta accaccaaga 4321 caatagactg gaacacgagc taaaccatag aggtttgtcc ttacaggacg acgacactgc 4381 cagcattaac tcatatggta gccataagaa tcgaccattc aaggacgaga gccacaaggg 4441 cagcgccgag acgatggagg gcgaggagaa gcgcgacgcc agcaaggagg atttaggtct 4501 cgacgaggaa ctggacgagg agggcgaatg cgaggagggc ccgctcgacg gtgatatcat 4561 tattcatgca cacgacgagg atatactcga tgaatatcca gctgattgct gccccgattc 4621 gtactataag aaatttccga tcttagccgg tgacgatgac tcgccgttct ggcaaggatg 4681 gggcaattta cgactgaaaa cttttcaatt aattgaaaat aaatattttg aaacagctgt 4741 tatcactatg attttaatga gtagcttagc tttggcatta gaagatgtac atctgccaca 4801 aagacccata ctgcaggata ttttatacta tatggacaga atatttacgg ttatattctt 4861 cttggaaatg ttaatcaagt ggttggcgct cggcttcaaa gtgtacttca ccaacgcgtg 4921 gtgttggctc gatttcgtga ttgtcatggt atcgcttatc aacttcgttg cttcacttgt 4981 tggagctggt ggtattcaag ccttcaagac tatgcgaacg ttaagagcac tgagaccact 5041 acgtgccatg tcccgtatgc agggcatgag ggtcgtcgtt aatgcgctgg tacaagctat 5101 accgtccatc ttcaatgtgc tattggtgtg tctaatattt tggctaattt ttgccataat 5161 gggtgtacag ctttttgctg gaaaatattt taagtgcgag gacatgaacg gcacgaagct 5221 cagccacgag atcataccaa atcgcaatgc ctgcgagagc gagaactaca cgtgggtgaa 5281 ttcagcaatg aatttcgatc atgtaggtaa cgcgtatctg tgccttttcc aagtggccac 5341 cttcaaaggc tggatacaaa taatgaacga tgctatcgat tcacgagagg tggacaagca 5401 accaattcgt gaaacgaaca tctacatgta tttatatttc gtattcttca tcatatttgg 5461 atcatttttc acactcaatc tgttcattgg tgttatcatt gataatttta atgagcaaaa 5521 gaaaaaagca ggtggatcat tagaaatgtt catgacagaa gatcagaaaa agtactataa 5581 tgctatgaaa aagatgggct ctaaaaaacc attaaaagcc attccaagac caaggtggcg 5641 accacaagca atagtctttg aaatagtaac cgataagaaa ttcgatataa tcattatgtt 5701 attcattggt ctgaacatgt tcaccatgac cctcgatcgt tacgatgcgt cggacacgta 5761 caacgcggtc ctagactatc tcaatgcgat attcgtagtt attttcagtt ccgaatgtct 5821 attaaaaata ttcgctttac gatatcacta ttttattgag ccatggaatt tatttgatgt 5881 agtagttgtc attttatcca tcttaggtct cgtacttagc gatattatcg agaagtactt 5941 cgtgtcgccg accctgctcc gagtggtgcg tgtggcgaaa gtgggtcgag tcctgcgact 6001 ggtgaagggc gccaagggca tcaggacact gctattcgcg ttggccatgt cgctgccggc 6061 cctcttcaac atctgcctgc tgctgttcct ggtcatgttc atcttcgcca tcttcggcat 6121 gtcgttcttc atgcacgtga aggagaagag cggcatcaac gacgtctaca acttcaagac 6181 ctttggtcag agcatgatcc tgctctttca gatgtcgacg tcagccggtt gggatggtgt 6241 actggacgcc attatcaatg aggaagcatg cgatccaccc gacaacgaca aaggctatcc 6301 gggcaattgt ggttcagcga ccgttggaat aacgtttctc ctctcatacc tagttataag 6361 ctttttgata gttattaata tgtacattgc tgtcattctc gagaactata gtcaggccac 6421 cgaggacgtg caagagggtc taaccgacga cgactacgac atgtactacg agatctggca 6481 gcaattcgat ccggagggca cccagtatat acgctacgac cagctgtccg aattcctgga 6541 cgtgctggag cccccgctgc agatccataa gccgaacaag tacaagatca tatcgatgga 6601 catacccatc tgtcgcggcg acctcatgta ctgtgtcgac atcctcgacg ccctcacgaa 6661 agacttcttt gcgcgcaagg gcaatccgat tgaggagacg ggcgagatcg gtgagatagc 6721 cgcccgtccg gacacggagg gctatgagcc cgtctcatcg acgctgtggc gccagcggga 6781 ggagtactgt gcccgtctca tccagcacgc ctggcggaag cacaaggcgc gcggcgaggg 6841 cggtggtggt ggtggtgggt ccttcgagcc ggatccggat caggtcgatg gcgatggtgg 6901 tggcgatccg gatgccgggg agcctgcaaa cgacgaaccg gcggatggga tggctgaggc 6961 ccccgcagga ggaggaggag gaggaggagg aggagatggt agtgttaatg gtggaggaac 7021 tggaactgga actggagacg gagctgccga tgctgccgac gagagcaatg taaatagtcc 7081 gggtgaggat gcagcgtcgg cggcagcagg agcggcgaca ggagcgacgg cgggaagtcc 7141 cggggcgggc agcgccggac gacagaccgc cgttctcgtg gagagcgacg ggttcgtgac 7201 gaagaacggc cacaaggtgg tcatccactc gcgatcgccg agcatcacgt cgcgcacggc 7261 ggatgtctga gccaggcctc gcccccccct ccaagatgca cgcgagtatt agcatgagta 7321 cgtgttggat gttgcatgtt gcgtgttgcg cgttgggtgc ttaaccaatc cagtgcgtca 7381 tgtgcaacta aacagtgagc taacaacaac agcgaacaag gcgaacaaca agcataattt 7441 tctgctatat ataatgaaag tacaccatac aacaaaacaa tcgaaacaaa ccaacaacag 7501 taacaacatc atcaagagaa caaccacaac aacaacagta acaacaatcg atgaaataac 7561 gaagaagaac aacaacaaca ccagtgtaat gtctttgagt tacaaaacat acatacatac 7621 atatacatac tatatatttg tatacccgca ttattcagtt aacgagtcag caaccaacaa 7681 caatcatact taagctaaac aaccgaaatg tcgaaatatt ttgtaagcag ctcgtagtcc 7741 aatccattta ggcgtttttt ccaaaccaaa caatttgcct aagcaggtgg aagaagaagt 7801 aaaacatcaa cacacccaca ctagagcttg aaaatgatcg ataaataccg attcgataat 7861 atcgatgttt tcaaggcaaa acacatattt aatatcgaga aagtgcaaac tgtcgatatt 7921 ttccaagctc taacatacac acaaaaccca cacacaacac actcacacat aaccataaac 7981 aaatataatc ccaaaaaaca aaaaaccaaa accgataaca aagttaaaga acgatgaaca 8041 agctctaaaa attgtatttg ccagtagtgg gacaacaaac aacacgcttg atttaattaa 8101 ctaccaaac