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LOCUS XM_017144079 2989 bp mRNA linear INV 09-DEC-2024 transcript variant X2, mRNA. ACCESSION XM_017144079 VERSION XM_017144079.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017144079.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2989 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2989 /gene="fog" /note="folded gastrulation; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins" /db_xref="GeneID:108059041" CDS 199..2142 /gene="fog" /codon_start=1 /product="protein folded gastrulation" /protein_id="XP_016999568.2" /db_xref="GeneID:108059041" /translation="MAPPNCLLAVLALTVFLGASDGLPITSRPIEGNVQRMVWEDWVN LDPEQRNLTKEKKVTAKSIFTLPFRHCPQGHTLYNQLCIPQSNIDPTDLIKQELLLAG GTDGNPPPPPIGDYDYGDDVESDEIVYDLSVIPTAMQDGLPPAVGAEDQALPSEDAPL KFNIFEKKFPTGTGEPEELPLPPATQASNSNSSTTASSPAGAASTTPAAPSGEASGRI AGGDLQAAPSNALSTSTNLTHSNRDIGQVEAIVLPAGQAQDGAVQLVTSSLTDSNNDY SSSTATAFSAEADLDQLLKADAFLPAYDGSIELLPPLFSHRKVSPPLSADQDVQTKQP DEEEEEESTTDIVPSGEEEYTTESTSTDADDTTVAEASMDTASTSSQTSPHPPEEPET DEGENRLVLIKSKVQPVQLTTTTSATATSTTAADAADSSSSTDRFHYQYFVEEVAASS TTATPEPSSSELIAQSDNDNLMTNTIGGHASEIDDQQELRLINELVKGMQRKQQQQQL EPTGAEGTSTSTPAPKSTEDATVTTAATYTNWSKVMPQLGQGASEAGTSTETAATSSQ AESAAATLSSITNRSNRNSKIIRVEGPAATPPNQDGYTPFWWLPSIGWRLERQVDGRG EDQSLLLRFFSTFRGSDAAAGTR" misc_feature 370..696 /gene="fog" /note="Folded gastrulation N-terminus; Region: FOG_N; pfam15888" /db_xref="CDD:464925" polyA_site 2989 /gene="fog" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 aaaatctcct gcttaaaatc tggtttatgt gttttttttt tatgtgaaat tttgtgaaac 61 gaaggaccaa taatcaaact taaactaatt ggactgctaa aaaaccagag cccaaaactg 121 aagaaacgat tccttcaagt gttgttcaaa tatcactagc cgctgaccag gagtaagtga 181 gcgatcgatc ccgaagagat ggccccgccc aactgcctgc tggcggtgct ggcgctaacg 241 gttttcctgg gggccagcga cggcctgccg atcacctcgc gccccatcga gggcaacgtc 301 cagcggatgg tctgggagga ctgggtgaac ctggacccgg agcagcggaa cctgaccaag 361 gagaagaagg tgaccgccaa gtcgatattc acgctgccct tccgccactg tccgcagggg 421 cacacgctgt acaaccagct ctgcatcccc cagtccaaca tcgatcccac ggacctcatc 481 aagcaggagc tcctcctggc cggcggcacg gacggcaatc ccccgccgcc gcccatcgga 541 gactacgact acggcgacga cgtggagagc gacgagatcg tgtacgacct gtcggtcata 601 cccactgcca tgcaggacgg cttgccgccc gccgttggag ctgaggatca ggccctgccc 661 agcgaggatg cgccgctgaa attcaatatt ttcgagaaga aattccccac gggcacgggt 721 gagcccgagg agctgcccct gccgccggca acgcaggcca gcaacagcaa cagcagcacc 781 acagcatcat caccagcagg agcagcatca acgacaccag ctgctccctc gggggaggcc 841 agtggccgca ttgctggcgg ggacttgcag gcggctccca gcaatgccct gtccacatcg 901 acaaatctca cacacagcaa cagggacatt ggccaggtgg aggccatcgt gttgccggcg 961 ggtcaggcgc aggatggcgc tgtccagctg gtgaccagct ccctcaccga tagcaacaac 1021 gactattcct ccagcacagc gactgcattc agtgcggagg cggatctgga ccagctgctc 1081 aaggcagacg cctttctgcc ggcctacgac ggcagcatag agctgttgcc gccgcttttc 1141 agccatcgca aggtgtcgcc gccgttgagc gcagaccagg atgtacagac caagcagcca 1201 gatgaggagg aggaggagga gagcaccacg gatatagtgc caagtgggga ggaggagtac 1261 accactgagt cgacgagcac agatgcagac gacacaacgg ttgcggaggc gtcgatggat 1321 accgcctcca cctctagcca aacatcacca catccgccag aagaacccga gacggatgaa 1381 ggtgaaaatc gcctggtatt gataaaatcg aaagtgcaac cggttcagct gacgacaaca 1441 acatcggcca cggcaacatc aacaactgca gctgatgctg ctgactcgag ctcctccact 1501 gaccggtttc attatcagta ttttgtagaa gaagttgccg ctagcagcac gacagcaacg 1561 ccagagccca gcagcagcga actgatcgcg cagagtgaca atgacaattt aatgacaaat 1621 acaattggcg gccacgccag tgaaattgat gaccaacagg agctgcggct catcaacgag 1681 ctggtgaagg gcatgcagcg caagcagcaa cagcagcagc ttgagccaac cggcgcagaa 1741 ggaacatcca catccacacc agcaccgaaa tcaactgagg atgccaccgt cacaacagca 1801 gcaacctaca caaattggtc aaaggtgatg ccgcaattag gccagggcgc aagtgaggca 1861 ggaaccagca cagagacagc agcaacatcg agccaggccg aatcagcggc agcaacacta 1921 tcaagtatta ctaatcgtag caataggaat agcaaaataa taagagtaga agggccagca 1981 gcaacacctc cgaaccagga cggctacacg cccttctggt ggctcccgag catcggttgg 2041 cgtctggagc gccaggtgga cggccgcggc gaggatcagt cgctgttgct gcggttcttc 2101 agcacatttc gcggcagcga cgcggcagca ggcactcgct aacggcaaca ccaaaggcag 2161 cagcagcaac tcctggctct ggccaccgac tagagccaca ggacgtcgct gggtgccgcc 2221 cagtctagtg taagatatgt agtgtcgtgt cagcaacacc gtttcaattg catgttgaag 2281 tttgttcata gttgtctcac ctttacactc atcccttgtc tgagtaaata tttattgcct 2341 tttaatgttt taattgaatg ccaaattgta catagcacat ccgaaactca ctacttagca 2401 acaacttttg ctttattttt gtttgcccgg gcattttttt tttgtggtat ttaaactgat 2461 ttcttttttt aagttgttga tttaatttta gggggacttt ttttttacat tacaatagtt 2521 ttatatgtgc gtgctgctgt cgttgttgcg agccctagca atattaattg tgattactta 2581 ggattaagaa ttgattgtta gacttaggcc aatgtatatg tatactctga atctttcgat 2641 gtatcttttt ttttatatta tcatcacact tatccaatat atatatgtat atgtaatatc 2701 ggaggacctg ttgtagctgt ctctgtgtat atacgttagt gcaaaagcca ttcaaaccga 2761 agcattttca aacgcattca gtgaaaaaca cacgtgtttc tatccctgta ttgtaagccc 2821 aatagttgtg aaaccactgt aaacagatat caaaactaaa gcatagaaaa tagtgtaatg 2881 catgtgtata gttgtagaaa aggcgattca ggcgaacggc gtgtttttgt caatgaaatt 2941 caaccaacaa ccaaagttct gaagaaaaac aaatgcggaa atgcaaaaa