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LOCUS XM_017143832 6221 bp mRNA linear INV 09-DEC-2024 (S6kII), mRNA. ACCESSION XM_017143832 VERSION XM_017143832.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017143832.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6221 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6221 /gene="S6kII" /note="Ribosomal protein S6 kinase II; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins" /db_xref="GeneID:108058865" CDS 406..3138 /gene="S6kII" /codon_start=1 /product="ribosomal protein S6 kinase 2 beta" /protein_id="XP_016999321.2" /db_xref="GeneID:108058865" /translation="MPLADSQKDLRQQPQQPQQQQQQQQQQHVSSTSSNNNAEQQCSS STGLGLQLRQRMQITSSGCSSLAVTPMEHTPTEDEESGGGSSGVTSSVTTVTSSQRRQ QQLHQVQQQSALQAALEQHHISPAAEEDFSRERPVHRTLCAPPPPELMELSDSESQGG RREGAAGTEPLDETENEFELKEVIKEGHDKADPSQFELLRVLGEGSFGKVFLVRKIIG KDAGTLYAMKVLKKATLKVKDRVRSTNERKILADVGHAFIVRLHYAFQTPGKLYLILD FLRGGDLFTRLSKEVMFTEEDVKFYLAELALAMNHLHSLGIIYRDLKPENILLDEHGH IALTDFGLSKQPLDGSKTYSFCGTVEYMAPEIVNRKGHDFAADWWSFGVLMYEMLTGN LPFHGQTRQETMNQILRSKLGMPENLSPEAQSLLRALFKRNPQNRLGAGTQGILDIKA HCFFATIDWVRLERKQVRPPFIPAVSRDDAFYFDVEYTSKSPRDSPGGPISASAHEIF RGFSFVAPVLLEGQCAGSNSCSTSASPLHNIAPIPAVPAGAPRTLPGVLPGNFHAEYN LLQELGRGTFSVCRLCEHRASKKHYAVKVIEKAAVAAASTSTSTSADCWEEVEIMLRY GNHPNIVTLYSVYEDAGSAYLVMELLKGGELLDRILAVGQMCESEASAVLRTIASAVA YLHEHGVVHRDLKPSNMIYASMRQTPETLKLCDLGFAKQLRADNGLLMTPCYTANFVA PEVLKRQGYDLACDIWSLGVLLYIMLSGRTPFASTPNDSPDVILKRIGSGHIDFTSSR WALVSVPAKELLRQMLHIVPENRPTVAQILEHAWLREQFAGGVQLTEYAVAPGSQLSL GAQQQQQNHISMALRGAVDATFRAIAIPQAANVGPVELSMLAKRRAKDRANLHS" misc_feature 1003..1947 /gene="S6kII" /note="N-terminal catalytic domain of the Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase; Region: STKc_RSK_N; cd05582" /db_xref="CDD:270734" misc_feature order(1009..1023,1033..1035,1081..1083,1087..1089, 1180..1182,1228..1233,1237..1239,1249..1251,1255..1257, 1366..1368,1372..1374,1378..1383,1387..1389,1417..1422, 1429..1431,1468..1485,1564..1566,1582..1584,1591..1593) /gene="S6kII" /note="active site" /db_xref="CDD:270734" misc_feature order(1009..1023,1033..1035,1081..1083,1087..1089, 1180..1182,1231..1239,1249..1251,1366..1368,1372..1374, 1378..1383,1387..1389,1417..1422) /gene="S6kII" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:270734" misc_feature order(1021..1023,1249..1251,1255..1257,1366..1368, 1372..1374,1378..1380,1429..1431,1468..1485,1564..1566, 1582..1584,1591..1593) /gene="S6kII" /note="polypeptide substrate binding site [polypeptide binding]; other site" /db_xref="CDD:270734" misc_feature order(1417..1449,1453..1485) /gene="S6kII" /note="activation loop (A-loop); other site" /db_xref="CDD:270734" misc_feature 1888..1890 /gene="S6kII" /note="turn motif phosphorylation site [posttranslational modification]; other site" /db_xref="CDD:270734" misc_feature 1927..1944 /gene="S6kII" /note="hydrophobic motif (HM); other site" /db_xref="CDD:270734" misc_feature 2095..3051 /gene="S6kII" /note="C-terminal catalytic domain of the Serine/Threonine Kinases, Ribosomal S6 kinases; Region: STKc_RSK_C; cd14091" /db_xref="CDD:270993" misc_feature order(2116..2130,2140..2142,2179..2181,2185..2187, 2296..2298,2344..2355,2365..2367,2371..2373,2479..2484, 2488..2490,2494..2499,2503..2505,2545..2550,2557..2559, 2602..2616,2620..2622) /gene="S6kII" /note="active site" /db_xref="CDD:270993" misc_feature order(2116..2127,2140..2142,2179..2181,2185..2187, 2296..2298,2344..2355,2365..2367,2494..2499,2503..2505, 2545..2550) /gene="S6kII" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:270993" misc_feature order(2128..2130,2365..2367,2371..2373,2479..2484, 2488..2490,2494..2496,2557..2559,2602..2616,2620..2622) /gene="S6kII" /note="polypeptide substrate binding site [polypeptide binding]; other site" /db_xref="CDD:270993" misc_feature order(2545..2577,2581..2616) /gene="S6kII" /note="activation loop (A-loop); other site" /db_xref="CDD:270993" polyA_site 6221 /gene="S6kII" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gtaatcgatg ttaacatcga tttttttgca gcactaaaaa aactttattt attgtttaat 61 gtgtaaataa tagtgataag aagcaacaca gctgtgcgga ttgcggagcg gatagcaaag 121 cagacggcgt ataaaacggg ggcgcattag aaaagtgcag cttgttggtc gtagagggca 181 gcacggaaag cagagaaatc cggagaagca acagcgcagt cggcagcgac gcccacgcag 241 cggaagtaat aaaaaagaaa agagaaatcg gaaggagggg gaagagccga ggaggcgcag 301 gaggaggagg aggaggagga ggaggaggaa aagcaggtgg gtcgagtaaa ggaaaaacgg 361 gaaacgagga acagcagtcc cacaacgcca gcagctatcg aagtcatgcc gctggccgat 421 tcccaaaagg atctccgcca gcagcctcag cagcctcagc agcagcagca gcagcagcag 481 cagcagcatg tgtcctccac cagcagcaac aacaatgcgg agcaacagtg cagcagtagc 541 accggattgg gcctgcagct gcgccagcgc atgcagatta cctcttccgg ctgcagcagc 601 ctcgcggtca cgcccatgga gcacacgccc accgaggacg aggagagtgg cggcggcagc 661 agcggagtca cctcctccgt caccacggtg acctcatcgc agcgtcgcca gcagcagctg 721 catcaagtgc aacagcaatc cgctttgcaa gctgccctcg agcagcatca catctcgccg 781 gcggcagaag aggatttttc cagggaaaga ccggtgcatc gaacactatg tgcgccgccg 841 ccgccggaac tcatggagct gagtgattcc gagtcccagg gaggcagaag agaaggggca 901 gctggaaccg aaccgctgga tgagaccgaa aacgaattcg agctcaaaga ggtcataaaa 961 gagggtcacg acaaggccga cccgtcgcag ttcgaactcc ttcgtgtcct aggcgagggc 1021 agctttggca aggtcttcct ggtgcggaag attatcggga aagatgctgg tacgctgtac 1081 gccatgaagg tgctcaagaa ggccaccctt aaggtcaagg atcgcgtccg gagtaccaac 1141 gaacgcaaga tcctggcgga cgtggggcat gccttcatcg tgcgcctgca ctatgccttt 1201 caaacgcccg gaaaactcta cctgatattg gatttccttc gtggcggcga tctgttcacc 1261 cgtttgtcca aggaagtgat gtttaccgaa gaagacgtta agttctattt ggccgaactg 1321 gcgctggcca tgaaccatct gcactcgctg ggcatcatct acagggacct taagccagag 1381 aatatactac tcgacgagca tggtcatata gccttgacgg acttcggtct gtccaagcag 1441 cccttggatg gatctaagac ctacagcttt tgcggtaccg tggagtacat ggcgccggag 1501 attgtgaacc ggaagggaca cgattttgcc gccgactggt ggagtttcgg ggtgctcatg 1561 tacgaaatgc taacagggaa cctaccgttt catggccaaa cccgtcagga aactatgaat 1621 cagatcctaa gaagcaagtt gggcatgccg gaaaatctgt cgccggaggc gcagtcgctg 1681 ctacgggcgc tcttcaagag aaatccccag aatcgcctgg gtgcgggtac ccaaggaata 1741 ctggacatca aggcgcactg cttcttcgcc accatcgact gggtgagatt ggaacgaaag 1801 caggtgcgtc cgccttttat accggcggtg agccgtgacg acgccttcta ctttgatgtg 1861 gagtacacct cgaagtcccc cagggactca ccgggtggtc caatctccgc atctgcgcat 1921 gaaattttcc gtggctttag cttcgtggct cctgtcctcc tggaaggcca atgtgccggc 1981 tccaatagct gctccaccag tgctagtcca ctgcataata tagctcctat tcccgctgtt 2041 ccggcgggtg cgcctcgaac tttacccggt gtcctgcccg gcaacttcca tgctgagtac 2101 aatctgctgc aggaactggg acgtggaact ttctccgttt gccgactgtg cgagcatcgc 2161 gcctccaaga agcattacgc cgttaaagtg atcgaaaagg ccgctgtggc cgccgcatcc 2221 acatccacat ccacgtccgc cgattgctgg gaggaagtgg agattatgtt aaggtacggc 2281 aaccacccaa atatcgtcac tctgtattcg gtttacgagg atgcgggctc cgcctattta 2341 gtaatggagc tcctgaaagg cggggagctg ctcgatcgca tactggccgt aggtcagatg 2401 tgcgaaagcg aggcgagcgc cgttttaagg acgattgcat ccgcggtagc gtatctccat 2461 gaacatggcg ttgtgcatcg agacctgaag ccttcgaata tgatatatgc cagcatgcga 2521 cagactcccg aaaccctaaa gctctgcgat ttgggcttcg ccaagcagct gcgcgcagac 2581 aacggactcc tgatgacgcc ctgttacaca gccaactttg tggcgcccga ggttctgaag 2641 cggcagggct atgacctggc ctgcgacatc tggtcgctgg gcgtccttct gtacatcatg 2701 ctatccggcc ggacgccatt tgccagcact ccgaacgatt cgccggacgt aatactgaag 2761 cgcatcgggt cggggcacat tgacttcacc agcagtcgct gggcactggt cagcgtgcca 2821 gccaaggaac tgttgcgcca gatgctgcac atagtgccgg agaatcggcc gacggtagca 2881 caaattcttg agcatgcctg gctgcgggaa cagtttgccg gcggcgtgca gctcactgag 2941 tacgcagtgg cgcccggatc gcaactttcg ctaggcgccc agcagcagca gcagaatcac 3001 atttcgatgg ctttaagggg agctgtggat gccacgtttc gggccattgc cataccgcag 3061 gcggccaatg tgggccccgt agaactgtcg atgttggcca agaggcgggc caaagatagg 3121 gccaacctgc actcctaatc ctgggccgca gcatggtgtc cgcggcgcca ggccaagagg 3181 caaataattc ggctagtttt ccgactctat agtattctaa tccaatgctg ctgtgccata 3241 ccgcgtcgtc tcgtcattgg caatgtgcac aagcttggtc cacatccaca tctgctgggc 3301 aatccccgca aacgctgccg cagcgccaag ctgcgcgtag tttagtcttt tggggagttt 3361 gggccccatt ttaagtattt gacaaaaagt gttaattatt tattttatat gaaagcatac 3421 caagatgcca aggccaaaaa gcaaaatgcg gggcatctat atacacatct ataactataa 3481 agatacggtt atacatctat atacatacat agctatttat ataacgtctc cttaagccag 3541 ggcctcgaga gcatatgtgt atgtggcgcc aggatcatct cagatgacgc ctgatcccac 3601 agtatttatc cttaaaatcg aaattcgcac acacaagttt acaacatata aaacaaaatg 3661 catacatatt tttaattaaa ttaatcgtag ctaaattttt caacatcacc gtgttattgt 3721 tgttaaacta attaattata attaaaatga aaagcgaaaa aaagtataca caaaaaaaaa 3781 aaacaagagt aagagccaca atccattttc tattattata actaactttt atcgccaaac 3841 taaaaaaaac ataatgaagc taaaaaactg tgtaaaaaga ttataagtcg acaaaaaaaa 3901 caaaagaaaa ctaaccaaga gtttcccaca acattttact tggaatgtca atttgcacaa 3961 ataactaagg aactataaga tgatttacat aatgacgaaa ttatactgtt tatgtacata 4021 cattcattaa agcgtgggat gaaactatta tattcggatt tataaggcaa aggacattaa 4081 aaccagatca ttttgtttaa catattcttt taaagctatt cccatatgta acatagtaca 4141 tcttgtaatt taattcctag cccacaagaa aggaatctaa ctttggcaag ccgaagttta 4201 tgtacccttg cagatcgttc cttggcagcc aaataaatag ccgcacaata tttaacattt 4261 tgatttatat gtgtatttgt aaaaccaata acaaattatg gccatttttt attattttgc 4321 aactcatttc tgatccttcc tatggaaggt ataggataca gttgtctgat ccgaaccgtt 4381 ccgaataata ttctacctgc aaaagaaata agactattag gaaagtttca tccctaaagc 4441 tttaaaaatg acagacggat atggctagat cgacttgact gttgattctg atcaaaaata 4501 aatgtaccaa tatacttcag ggtcggagac gtctctttca aagcgttgca aacttctgcc 4561 tgaaattata atatcctctg caaggatata aatcctaaat ccaacatgtt cactgtctta 4621 tagtactaaa agtttcatct catcgtgtac atactgaaaa acagttgtga caacatcaaa 4681 ttggtttccc atttcgtttg ctgatgtctt ccaacagaag ttgtatcgct ttacaatacc 4741 ttaacttgaa tgttctaaat tacactacgg tggttcagat ccgaagtcgt aaagtcattt 4801 ctttaataaa ctttataata cagatttgat tgtgtcgccc catcggttaa acatcaaacg 4861 atcagactat tttttgccac aagaaagaca actaaaaatg tgattctata agcaaatttt 4921 tcgctacttc gtttgcaatt caatttttgc caagaaaaac ttgttaaaaa ctgtgttaaa 4981 ataattatta aaagatatat actaaacaaa aatgggacaa aaacgaataa aaatatgtac 5041 aagattcatg tgaatcgaaa tcacttttta agaaagctat gtcatcttga aaacaaaagt 5101 ttctccgaca tttttggggc ttatttggct gaatgtgtgt gctttgagag tgtgcgtatg 5161 tgttttgtgt acgtgtgtgt gtgtgtatgc taataagatt tacgcgctgt gccactacta 5221 aacttactgc taacaaaaaa caataattgc atatacacca cctagaaaat gttagttaaa 5281 cttgcaaaaa attttaaaac aaataacttc accaaatgat aaacagtgta ttttagcggt 5341 gtgaaggaaa aaggtgaagg gggattacgt atatttatcc aaaaatatat attaaattag 5401 ctagctgagg agtaaataaa attttaaaag gcactaactt taattttgat ttaaaaatga 5461 tttcatttca aaaacaccct gaaataaaag ttaaaaaaaa tgtggcttcg ataaatttgt 5521 agaagatatt gagcagtatg aagcaaaagt ttcaacataa atactcaaat caaatttaga 5581 gtttcaaaac atgatagaaa aaattccaga aatgttccgt taattaccat atgttaaaac 5641 atttcaacaa atttgtacaa aattaaataa aagaaagatt attgctatga ttaaactctt 5701 tcagaattta atgtcagtac ggacccttcg gttagtaaag atttatgtag caatatttat 5761 ttgaagccca tatgtatttg ttatattgtg acctacatat aataacaatt aaaaaatatt 5821 accggtttga taaaaaacct acccaaaaaa gacagagatg gcaaacaatc cccaagcaaa 5881 ggaaaataac caagattttg atcccagcgt tcaacactca cttaaattat tataatcaga 5941 cctcaaactc gacctggacg tcgactaaat tccctaaaaa aacacacacc aaatatatat 6001 acggatgcta cgtacatata ttttcttagt agatttttac agcttccaga actatatatt 6061 cgtatgaaag aaatctcata aaaccaaatg agttatttaa caaattactg agcaacactt 6121 ttattgtaat cgaaatcgat tcaaagttat tgtaaagtta aatcctaaaa aaagtcaaga 6181 gagatgattt gaaacaagaa ataaacattc aaagttcgaa a