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LOCUS XM_017143816 5031 bp mRNA linear INV 09-DEC-2024 (Usp2), transcript variant X1, mRNA. ACCESSION XM_017143816 VERSION XM_017143816.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017143816.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5031 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5031 /gene="Usp2" /note="Ubiquitin specific protease 2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108058857" CDS 313..3270 /gene="Usp2" /codon_start=1 /product="ubiquitin carboxyl-terminal hydrolase Usp2 isoform X1" /protein_id="XP_016999305.2" /db_xref="GeneID:108058857" /translation="MMLDIKKTRGFHKIPQASKLQTATGATSSVAATLGASATEVPSP GGSALSGRGTASLATRLKNPGPGKHSTVPEASVAVVDRTHAALAVAKYGRGGGVATQV RSTTASTANSQSNPVRAANQRYFLVSSYKDPTFLKAECELAHAQVAASKVKSTSQPHR RSRAGEDSRNNNQNGSRAPALVDMRRTPMFNGNQQPTTTGSSSTTINNTTTTSNGVLK YSARSTTATATAAAATSTSTRSYGKLKPLNNNQSTAGSAMMNGHATNNNNNSTNLNNG GNNNMQRQQDQHDDISYIDSDDPPATSGPAGGGGSTAKASICYFKPITPPMQLRHQQT NKVQQQEQQPASSKTASHRYPRPKSTIIASAQSNFAASYEKFSGALYRQANGELNPES RSNSNARRYGIDSLSIKASIEKFNNLSGQKRQAPSSSAGLAGSGSGTGSGSGVEAGTS RSNHASQAGGSSGNLQQRYSSDLDNIRVAAGYSSSLTRAAYRTTGTMNSVSTPVAATS GGGGAGTAVVSPINKVTVRGAHSSRQANECLAIATKVNSDATAAATPSVVGTTETPTP ATSSVSTATATAPSSASDSTAARSGTGSSSSARSVLPPMTPTSNRYWDRDRDSGTSRN SVSTSSALNSSSLKHNSDDGYKSASSSRDEKSEGLCGLRNIGNTCFMNSVIQCLSHTQ ELTRFLRSHHGSRSSSTKDQQILHEFAKLIQEMWTSNVHTVTPMELKRAFSTKHRMYS DYNQQDAQEFLRFFLDSLHSALNSGVKGETLSIDDNLSDNKKADLTWEWYTRHENSLV RDLFVGQLKSTLKCTTCGNTSVTFDPFWDLSVPLPSSSRCKLEACLDLFIREEVLDGD EMPTCAKCKTRRKCTKSFTIQRFPKYLVIHLKRFSETRWSKLSNIVEFPTSDSELNMG SYGANSNSNVHYSLYAISNHMGSTAGGHYVALCKHPASRKWHEFNDNIVSDALSENHL VSSSAYILFYERA" misc_feature 1645..>2151 /gene="Usp2" /note="Chitinase [Carbohydrate transport and metabolism]; Region: Chi1; COG3469" /db_xref="CDD:442692" misc_feature <2275..>2817 /gene="Usp2" /note="Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]; Region: UBP12; COG5560" /db_xref="CDD:227847" misc_feature 2293..3261 /gene="Usp2" /note="A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl...; Region: Peptidase_C19R; cd02674" /db_xref="CDD:239139" misc_feature order(2302..2304,2317..2319,3136..3138,3190..3192) /gene="Usp2" /note="active site" /db_xref="CDD:239139" polyA_site 5031 /gene="Usp2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 aacttaaaaa aaaaccaact taagtccaac taaacgccag gctaactaac aatactccta 61 actaaaataa aaccccctaa gaaaccatta taagatcatc aaaaaatcca tttgcttagg 121 atatatgtat agtgcgaggc acgacaggat catccggtta gtcgagagta gtttattcct 181 ggcaggcggc gaggaaacaa acaaacacaa cacaaaatct cgtatccact taaccgtagg 241 caggcaacaa aaataaacgc tagagaacca actgcagcag agagaaaagg agtgcggtga 301 ccatcccgtc gaatgatgtt agacattaag aagaccagag gattccacaa gattccacag 361 gcatccaaat tgcagacagc gacgggagca acatcatcgg tagcagcaac attgggagca 421 agtgcaacag aggtgccatc accaggagga tctgccttat cgggacgggg aactgctagc 481 ctagccactc gtctgaaaaa cccagggccg ggcaagcact cgacagttcc tgaagcctcg 541 gtggccgtcg tcgataggac tcacgccgcc ctggcggtag ccaaatacgg cagaggcggc 601 ggagtagcaa cccaggtccg ctccacgacg gcgagcacgg cgaacagtca atccaatccg 661 gtgcgggctg ccaatcagcg ttacttctta gtgtccagct acaaggatcc cacattcctg 721 aaggccgaat gcgagttggc ccacgcacag gtggcagcca gcaaagtgaa aagcacgtcg 781 cagccccaca gacggagtcg agcaggtgag gactcgagga acaataacca aaacggtagt 841 cgggcaccgg cgctggttga tatgcgacgc acgcccatgt tcaatggcaa tcagcaacca 901 acaaccaccg gcagcagcag caccaccatc aacaacacca ccaccaccag caacggagtt 961 ctcaagtaca gtgcccgctc cacgacagca acagcaacag cagcagcagc aacttccacg 1021 tctaccagga gctacggcaa gctgaagccg ctgaataaca accaatcaac cgccggatca 1081 gctatgatga acggccacgc cactaacaat aataacaaca gcactaacct caacaacggc 1141 ggcaataaca acatgcagcg tcaacaggac caacacgacg acattagcta catagacagc 1201 gatgatccgc cggcaacaag tggcccagca ggaggcgggg gatcgacagc caaggcgagc 1261 atatgttact tcaagcccat cactcccccg atgcagctgc ggcaccagca aacaaataaa 1321 gtgcagcaac aggagcagca acctgctagc tcgaagacag ccagccatcg ctatccacgg 1381 cccaagtcca caattatagc atcggcccaa tcgaacttcg cagccagcta tgagaagttc 1441 agtggtgctc tctatcgaca ggccaatggc gagttgaacc cggagagcag gagtaacagc 1501 aatgccaggc gatatggcat agattccttg agtatcaagg cctccataga gaagttcaac 1561 aatctcagtg ggcagaagag gcaagctccg agctcttcag cgggtctggc agggtctggc 1621 agtgggacag gctcaggctc aggagtcgag gccgggacca gtcgcagcaa tcacgcatcg 1681 caggcaggcg ggagcagcgg caacctgcag caacgctaca gcagcgacct ggacaacatc 1741 agagtggctg cgggctatag tagttctcta accagagcag cctatcgtac tacgggcacg 1801 atgaatagtg ttagcacgcc ggtggcggcc acatctggag gaggaggagc cggcactgcg 1861 gtggtttcgc ccattaacaa ggtgacggtg agaggagccc acagcagcag gcaggcaaac 1921 gaatgcctgg ccatagccac caaggtaaac agcgatgcaa cggcagcagc aacacctagt 1981 gttgtcggta caacagaaac accaacacca gccacgtctt ccgtctccac agccacagcc 2041 acagccccaa gctccgccag cgatagtacg gcggcaagaa gcggcactgg gagtagcagc 2101 agtgctcgga gcgtgctgcc gcccatgaca cccacgtcga atcgctactg ggatcgggat 2161 cgggacagcg gcactagccg caacagcgtt agcacctcct ccgctctcaa ctcgtcatcc 2221 ctgaagcaca attcggatga tggctacaag agcgcctcgt cgtcgcgtga tgagaagtct 2281 gaaggtctgt gcggtctgcg aaacatcggg aacacttgct tcatgaactc tgtcatccag 2341 tgtctgagcc acactcagga gctgacacgc ttcttgcggt cgcaccatgg ctcccgctcg 2401 tcctccacca aggatcagca gatactccac gaatttgcca aacttatcca ggagatgtgg 2461 acgtcgaatg tgcacactgt gacgcccatg gaactgaagc gggccttctc caccaagcac 2521 cgcatgtata gcgactataa ccaacaggat gcgcaggagt tcctgcgttt cttcctcgac 2581 tcgctgcact cggccctaaa ctcgggcgtc aagggtgaga cgctcagcat tgacgataat 2641 ctcagtgaca ataagaaggc agacctgacc tgggaatggt atacgcggca cgagaactcg 2701 ctggtgcgcg acctctttgt gggtcagctt aaaagcaccc tgaagtgcac cacctgcggc 2761 aacaccagcg tcaccttcga tccgttctgg gatctaagcg taccgctgcc gtcctcgtcg 2821 cgttgtaagc tggaggcctg tctcgacctc tttatccgtg aggaggtact cgacggcgat 2881 gagatgccca cgtgcgccaa gtgcaagacg cggcggaaat gcaccaagag cttcaccatt 2941 cagcgtttcc ccaaatatct agttatacac ctaaagcgct tttcggaaac gcgctggagc 3001 aagctgtcca acatcgttga gttccccaca tcggacagcg agctgaacat gggctcctat 3061 ggcgccaact ctaactcgaa tgtgcattac tcgctctatg cgatatccaa tcatatgggc 3121 tcaacagctg gcggtcatta tgtggctctt tgcaagcatc ccgcatcccg caagtggcat 3181 gagttcaatg ataatatcgt cagcgatgcc ttgtccgaaa accatctcgt ttcatccagt 3241 gcctatattc ttttctacga gcgtgcgtaa ggcccaattc gtgccctacg gcaaccgtca 3301 ggtgcagtgt tgatgacgat gtcccagatc cagatgtccc ggcgcactcc tcagatcggg 3361 atggaaacca ggatgaccat gggagcggga tgagagcgag aggaaatgga acaaccaaca 3421 aacgaactct aagaaacgct tcgtagaatt gcatacaaac aaatttactt aatttaactc 3481 aacttaaaag caaaacagaa ctaactccta acttaaagca gaaaccaaaa gaaaaacgga 3541 ataaaagtgc atacaaaacg aggattaatg tacatataaa aaacgaactt cgatggctta 3601 acgaaacaag taaaagaaca ataattaaaa tccgacgaaa aacaatgaat ctgtgcaata 3661 aacaactttc ggcaaaccaa aaaacctcaa gccccaggat aagtgcaaga gatactaata 3721 ctaactagtg gcagaatata cttttgtaag gacacacata gcaatcagcg gcagcaacga 3781 tacaatgttt cactatttct ctctttttaa gtgttattta taaaaactaa attttcaatt 3841 tacatcgccc cactttcctt gtctcttttt cgcctgtcat tctatctctc tcttactcac 3901 attggtttgc cgaacgatag atagtgttct gtggttgtgt gtaaaaaaaa taaacaaaaa 3961 atgaaaagtg ggagaggaaa actaattata tatttaaaat tcgtcttgtg caatatattt 4021 cataaaaata gaaaaacaat aactgcaata aatataaata aattcaaact aaagacgatt 4081 aaaaccaaac aaaacgcaat cgcaccacaa aattcacact agctaagaga aatggctttt 4141 taacaactaa aaaagaaagt aatattaatt aattgataac gagcaacaaa ttgaatggaa 4201 gggggtgcga agtgaagctg aaatctgcat tgtgaaaacg tacttatgat aaatgctagt 4261 agtaaaattt aaaaaattga agcgatcagc agcaacaaca ccaaaaaacc attgttattc 4321 tttagccaag acaccaatca accaacaaaa ccatccagcc catataaaaa agggaaactc 4381 cccagggcac aaaagaccgt tatgaagttc gtttcaaatt tatgaagttt tttgagtgtt 4441 tttttgttag gcttgggtaa agctacctaa actagtctta aaaacaaaag agtttagtat 4501 gagggctact aaacgaaacc tgtttttatt tgtttgattt tatgcgtatt ttgtagttta 4561 aggctagcgg ttttccatca cctcagcaat cccttttata cttgctatat attttttgtt 4621 gcttattttg ttttatacct acatatatta tgtaatttat ttatttattg tatctatgta 4681 aattatataa agaacacgga cacctacact tacatctata ctctgcgaaa caggatgtgt 4741 acataatgta gcttgtttcc gacatccaaa agcagctaca gaaaaactaa aacaacatct 4801 acacggcacc aaaatctaaa tgaaagataa taaaaatata caagacacat tatttattta 4861 tttgtaaaaa aaaatgcaac tcctatattt tttccggctt aaatattagt ttcaattaaa 4921 attgttggat attttactaa cgttaaagaa aaccaaaaac attaaaaaaa agaaaaaatc 4981 accaagaaaa aaatgcaaaa ataaacgcaa aaataaaatt gaaaaattta a