Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_017143195 3493 bp mRNA linear INV 09-DEC-2024 mRNA. ACCESSION XM_017143195 VERSION XM_017143195.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017143195.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3493 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3493 /gene="Vsx1" /note="Visual system homeobox 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108058459" CDS 225..2675 /gene="Vsx1" /codon_start=1 /product="homeobox protein unc-4" /protein_id="XP_016998684.2" /db_xref="GeneID:108058459" /translation="MQATKMRTPFAIQEILGLGAYQQQQQNNNNNNNNATPSEAPPSP AATPPPAAPPQQQQQQQQQQQQQQQAIESLRDSRSISPDVSRLSAAAAAAAAAAAAAH CQLPVFNPANFYAAAGYAAAADPGNAAAAHHHHMTTLAAAAYLRGFLPPGFSTPHEFR GHFQQHFGAQFAEQAAARGQEYASSLANASGDEQSPSKNSSSSGNGGSGGSGSGSGSG SSGGSGGANQANSNGHLGSPTASNGGSTAGGGSGGTSGSTSSTSAGGGNGGGTSAGSR SSPAAPHHSAAHLAAHQHAAAAAAAAHHHAAAAAAAHHAHHAHAQAHAHAHAHVHAHA AHAAHAAHVHHAEAFLGGAGGAGGGNPNSLLAAHGGDVLVGPGGTVGPGGKKKNKRRH GRTIFTSSQLEELEKAFKEAHYPDVSARELLSMKTGLAEDRIQVWYQNRRAKWRKTEK CWGHSTKMAEYGLYGAMVRHSLPLPETIIKSAKEDESVAPWLLGMHKKSLEAAELLKS DESDRETPTSDDTNTSYSAGSTHNSPISSFSISRLLFDAPPPPAAGSAGGKGHGHGHG HGHHHHHHHHKAGHHHHAHVHAQAQAHAHMLLHHQQQQQQQHHLHGGGEPSSLQQQQQ AVGSGSGASGPPAHHPYNQQQHLHHLQQLQQQQQQQQAAQQQAQHHQQIHHMHHHNAT GYAEAAVAAAAAAVAARNAAAAAAVAVASASASAAASAVTIAESEAEEEQDDIEDMEM DKDCELDEELDVEPVDLNNDNNDNNEGDPQADTDADGDPEIDICDDHDEEVRLQEQLL LKVKQEQQQQQAQHHGLR" misc_feature 1392..1565 /gene="Vsx1" /note="Region: Homeodomain; pfam00046" /db_xref="CDD:459649" ORIGIN 1 gctccagcgc tcaaaaaaac acactaaaca agcaaaaaaa aaagaaaaaa acaaatcgaa 61 aaaaaattac aagataaata tccaagtgcg aaagtgagtg aacttttttt cctgtgtacc 121 gagtgcgtgt gttttagcca tgaaagtgtg aaattgggaa ctccaaactc tttttgcgaa 181 atatctcgaa agaaaaaaaa taccaagaac taccgtcggc aaaaatgcag gccacgaaaa 241 tgcgtacgcc ctttgccatc caggagattt tgggactggg cgcctatcag cagcagcagc 301 agaataataa taataataat aataatgcca cgccctcgga ggcgccgccc tcgccggcag 361 ccacgcctcc acccgccgcc cctccgcaac agcagcagca acaacaacaa cagcagcagc 421 aacaacagca ggctatagaa agtttaaggg actcgagatc catatccccc gatgtctccc 481 gactttcggc ggctgctgca gcggcggcgg cggcagcggc ggccgcccac tgccaactgc 541 ccgtcttcaa tccggccaac ttctatgccg ccgccggtta tgccgctgcc gcggatccgg 601 gaaatgccgc ggcggcccat catcatcata tgaccacctt ggcggcggcc gcctatctca 661 ggggattcct accgcccggc ttcagtacgc cccacgagtt ccgggggcac tttcagcagc 721 acttcggggc acagtttgca gaacaagctg ccgcccgagg tcaggagtat gcgagcagtt 781 tggccaatgc cagtggtgat gagcagtcgc cgagcaaaaa cagcagttca tcgggcaacg 841 gaggatccgg aggttcagga tcgggctctg gttcaggtag ctccggagga tcgggaggcg 901 ccaaccaggc caactccaat ggtcatttgg gctcgccaac ggccagtaat ggtggctcca 961 ccgccggcgg tggttcggga ggcacatccg gtagcacctc ctccacatcc gctgggggag 1021 gaaacggagg aggaacctcc gccggcagcc gctcctcgcc cgctgcgccg catcactcgg 1081 ccgcccatct ggccgcccat caacatgcag cggctgctgc ggctgccgct catcatcatg 1141 ccgccgccgc tgccgccgcc catcacgccc accatgccca cgcccaggcg cacgcccatg 1201 cccacgccca tgtccatgcc catgccgccc acgctgccca tgccgcccat gttcatcatg 1261 ccgaggcatt tttgggcgga gcaggcggtg ccggcggagg taatcccaat agtctgctgg 1321 ccgcccatgg cggcgatgtc ctggtcggtc ctggcggcac tgtgggtccc gggggcaaga 1381 agaagaacaa gcgacgtcac ggcaggacaa tcttcaccag cagccagctg gaggagctgg 1441 agaaggcctt caaggaggcc cactatccgg atgtgagcgc cagggagctg ctgtccatga 1501 aaacgggact ggccgaggat cgcattcagg tgtggtacca gaatcgccgg gccaagtggc 1561 gcaaaacgga gaagtgctgg ggtcacagca ccaaaatggc cgagtacggt ttatatgggg 1621 cgatggtgcg gcactcgctg ccgctgcccg agacgattat aaagtcggcg aaggaggacg 1681 aatcggtggc cccctggctg ctgggcatgc acaagaagtc cctcgaggcc gccgagctgc 1741 tgaagagcga cgagagtgac cgtgagacgc ccacttcgga tgacacgaac accagttact 1801 cggcgggcag cacccacaac tcaccgatct caagcttctc gatctcacgg ctgctcttcg 1861 acgccccacc accgccggcg gcgggctccg ctgggggaaa ggggcacggg cacggtcacg 1921 gtcacgggca ccatcatcac catcaccatc acaaagccgg gcatcatcat cacgcccatg 1981 ttcatgccca ggctcaggct cacgcccaca tgctgttgca ccaccagcag caacagcagc 2041 agcagcatca tttgcacggc ggcggcgagc catcctcctt gcagcagcaa cagcaagcgg 2101 ttggttccgg ttccggtgca tctgggccac cggctcatca tccctacaat cagcagcagc 2161 atctgcatca cctgcagcaa ctgcaacagc agcagcagca acagcaggcg gcgcaacagc 2221 aggcgcagca ccaccaacag atccaccaca tgcaccacca caatgccacc ggctatgccg 2281 aggccgctgt ggctgctgcg gcagctgcag ttgctgctcg gaatgcagca gcagcggccg 2341 ccgtggcagt ggcctccgca tccgcatccg cagccgcatc cgcagtgacc atcgcggagt 2401 ccgaggcgga ggaggagcag gacgacatcg aggacatgga gatggacaag gattgtgagc 2461 tggatgaaga gctggacgtg gagccggtgg acctcaacaa cgataacaat gacaacaacg 2521 aaggagatcc gcaggcggat acggatgcgg atggggatcc cgaaatcgac atttgcgacg 2581 atcacgacga ggaggtgcgt ctgcaggagc agctcctgct gaaggtgaaa caggaacagc 2641 agcagcagca ggcccagcac catggactaa gatgaaacat gtacatcgat gtgttgttct 2701 aaaagaacaa cgataaatga taaatatata tatatattca ggattctcga gacacagcaa 2761 catccggcta aatgcaatga acatttttct aaggcataaa cacgatgagc tttttacact 2821 gggctgtgta ttttgtattc aaaatgttta taaaacaaat acacagccca ggttaaaaat 2881 cttaaattaa aggcattata ttcataacac aaaaaacaaa acaaaaacct aatcttaaag 2941 ccaacaaaca attttttttc atacacctaa gccagcacac gtaattaatc tatatacata 3001 tatatatata taataacata tatattctct catttcttca gtgtaaataa taaattatta 3061 caaagaaaaa acaatacatt agcgcgtaaa aagagctgca acgatttgca aacattttta 3121 aaatatgcta aatgtgattt aatttagttg tcaattctaa aaacaaggct ttttatggtt 3181 taggactctt tttttttgcc tattaaattt agtgattttt tttttctaac tgtatttact 3241 tcctgtaaaa aatgtacata ccaaatccga aattcaatca atacaacaac gtataatatg 3301 tacatgtgtt acaacctgaa acgtaaaaca gtccactgcc tctggctctc aaattcttct 3361 ctactctttt gtctttataa ttcaaatttt ttaaaacacg aaaaaaagat acataagtaa 3421 cagcaaaatg tgtatttaaa tgaaaaaaaa aacaaacgaa caagaaacaa aacaaatcca 3481 catacaatac aca