Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_017143193 3117 bp mRNA linear INV 09-DEC-2024 (Pop1), transcript variant X1, mRNA. ACCESSION XM_017143193 VERSION XM_017143193.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017143193.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3117 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3117 /gene="Pop1" /note="POP1 ribonuclease P/MRP subunit; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108058457" CDS 246..2936 /gene="Pop1" /codon_start=1 /product="ribonucleases P/MRP protein subunit POP1 isoform X1" /protein_id="XP_016998682.3" /db_xref="GeneID:108058457" /translation="MLEKCKKWISPVLENIEIRKSTRAARFVLNFDSEIPIPRFRFRF LSKFPMSSSTQKLEYDAAVGGRVALPSHVTTYHYAAVALQEIRTLVADCQETTQRSSK LIFQTLPKHMRRRAMSHHPKRLPRKYRQAHKSQMSKGGNQPVNSKRPSRRYRRRPKNL LREYVRRQRRHLWLETHIWHAKRFHMVDRWGYRLAFASCDKTYRACYRATTEHCLLQD ISFYECLEIRGPLEQLRQGFARLTSPQCGLGVTARTFLSGRREGSVELFKENQYPLGA LQRVSFMWRPREEQEKGEHHTLWLWLHPSGAQAILEQLISVFQLKSKKQQRLPLKEEG KKELLSKEEVKEEHLSGEKRSSKSSQKELRFWTQTKSFDFQPTYSNAEETIHLISLQR QFNRFRLTGPRAQRVLLASLRPHHQEEEDNYCQAALQLSSPAQLLSNLVMATQVVDPR LQRPKKRTKAEGKEQPKLSPEDLLLNQPANLPESPLWSQEARQRLAGSIMSTHTYNEL RQQHSVVPGAPCAFEQQMQAMPVILIQRPGSQDPKYKRLAYGCGWDVIAPAGYGMALW LTLTMWGARPGGLRELDSVAREAGAELHLPDTIAGIQQAAASAEELRAAYFRMPPNKR SNYRKLAVVSPFIAPWKCLLRDWGATPATGSSFYVLRHRQQLEEIAECLRQRRALPQE LLHQEALIQIQLRLISRGCVKSNALICLPTQDDHKQRWRQLKRNDQAPVCVEPLQPDL NEQQRKDLRQSHKLKLKRLRARRVREKRQLQEKATKRVYIRPAGTAHLVKAQLEEMSA LWLPSDPREMRQSVRRQCSREVFGYVTLASFTFTEALVCAVGYVTAAGLQQLVGGELP NSKGTNSLKEPLMCLLRDPDSRDYRWASFQINLNVASPGL" misc_feature 495..935 /gene="Pop1" /note="Ribonucleases P/MRP protein subunit POP1; Region: POP1; pfam06978" /db_xref="CDD:429227" misc_feature 1899..2165 /gene="Pop1" /note="POPLD (NUC188) domain; Region: POPLD; pfam08170" /db_xref="CDD:462391" ORIGIN 1 ttcaacagca actctcttga agtcggggcg ttgaagttaa agtacactgt ttacaaaatt 61 gacataaaca atccagggaa cctgggaaat ggtttgtttt gctttcgaag ctcttgtttc 121 gggggaaaaa aagagtgcag aacgatgaat cgcaagctat ttttaggaat agtggttgca 181 gttggattta aacaagtgaa ggtgtaagtt cttcagccgg agaagtttaa atacaagcga 241 aacggatgct agaaaagtgc aaaaagtgga tatcgccagt gttggaaaac atcgaaatac 301 gaaaatcaac acgtgccgct cggtttgttt tgaatttcga ttcagagatc ccgatcccga 361 gattccgatt ccgattcctc tccaaattcc caatgagtag ctccacccag aagctggagt 421 acgatgcagc ggtgggcggc cgggtcgccc tgccctcgca cgtgaccacc taccactatg 481 cggccgtggc gctgcaggag atccggactt tagttgccga ctgccaggag acgacgcagc 541 ggagcagcaa gctgatcttc cagacgctgc ccaagcacat gcgccgccgg gcgatgtccc 601 atcatccaaa gcgcctgccc cgcaaatacc gtcaggcgca caaatcccag atgtccaagg 661 gcggcaatca gccggtaaac agcaaacgac cctcgcgaag gtaccgccgg cgacccaaga 721 acctcctgcg cgaatatgtg cgccggcaga ggcgtcacct gtggctggag acgcacatct 781 ggcacgccaa gcgcttccac atggtcgacc ggtggggcta tcgcctggct ttcgccagct 841 gcgacaaaac ctaccgcgcc tgctatcgcg ccaccacgga gcactgcctc ctgcaggata 901 tctccttcta tgaatgcctg gagatcagag gacctttgga gcagctgcgc cagggcttcg 961 cccgcctgac cagtccacaa tgcggcctcg gtgtgacggc cagaactttc ctcagcggaa 1021 gacgcgaggg cagcgtggag ctgttcaagg agaaccaata tccgctggga gctctacagc 1081 gagttagctt catgtggcgg ccaagggagg agcaggagaa gggtgagcat cacacgctct 1141 ggctgtggct gcatcctagc ggagcacagg ccatcctgga gcagctaatc agcgtgttcc 1201 agctgaaatc gaagaagcaa cagaggttgc cgctcaagga ggaaggaaaa aaagagcttc 1261 tcagcaagga ggaagtaaag gaggagcatc tcagcgggga aaaacggtcc tccaagtcga 1321 gtcaaaagga attacgcttc tggacccaaa cgaaatcctt tgatttccaa cccacttact 1381 ccaatgccga ggaaaccatt catttaatct ccctccagcg gcaattcaat cgcttccgcc 1441 tcacaggacc ccgcgcccaa cgtgtcctgc tggccagcct gcgtccgcat catcaggagg 1501 aggaggataa ctactgccag gcagccctgc agctgagttc gcccgcccag ctgctttcca 1561 acctggtaat ggccacccag gtggtggatc cgcgactcca gcgacccaag aagcgcacga 1621 aggcggaggg aaaggagcaa ccgaaactct cccccgagga tctccttttg aatcagcccg 1681 cgaatctccc agagagtccg ctgtggagcc aggaggcgcg gcagaggctg gccgggagta 1741 ttatgtccac gcacacgtac aatgagctgc gtcaacagca tagcgtggtg ccaggagcgc 1801 cgtgtgcctt cgagcagcaa atgcaggcga tgcccgtgat actcatccaa agacccggct 1861 cccaggatcc caaatataag cgattagcct acggctgcgg ctgggatgtg attgcgccgg 1921 ctggttatgg catggccctt tggctcacgc tcaccatgtg gggcgccagg ccggggggat 1981 tgcgggaact ggattcggtg gccagggaag cgggcgctga gttgcatctg ccggatacaa 2041 tagcaggaat ccagcaggct gctgcttcag ctgaggagct acgcgccgcc tacttccgca 2101 tgccgcccaa caagcgctcg aactaccgga aactggcggt ggtcagtccg ttcattgctc 2161 cctggaagtg cttactgcgc gattggggcg ctactcctgc cacaggatcc tcgttctacg 2221 tgctgcgcca tcgccagcag ctggaggaga ttgccgagtg cctgcgacaa cgtagagcgc 2281 tgccgcagga gcttctgcac caggaggcac tcatccagat tcaactgcgt ttgattagtc 2341 gcggctgcgt gaagagcaat gctctgattt gcctgcccac gcaagatgat cacaagcaac 2401 gctggcgaca gctgaaacgc aatgatcagg cccctgtttg tgtagagcca ctgcagccgg 2461 atttgaatga acagcagcgc aaggatctgc gccagagtca caagctcaag ttgaagcgtt 2521 tgcgtgcgcg gagggtgcgt gagaagcggc agctgcagga gaaggccacc aagcgtgttt 2581 acatccggcc agcgggcact gctcatctgg tgaaagccca gctggaggag atgagcgccc 2641 tgtggctgcc cagcgatccg cgggagatgc ggcaaagcgt gcgacgtcag tgtagccgtg 2701 aggtcttcgg ttatgtcacc ttggccagct ttacgtttac cgaggctctg gtctgcgccg 2761 tgggctatgt aaccgccgcc ggtctgcagc aactcgtcgg aggggagcta ccgaactcca 2821 agggaaccaa ctccctcaag gaacccctca tgtgcctgct gcgcgatccg gatagccgcg 2881 actaccgctg ggccagcttt caaatcaatc ttaatgtggc cagtccaggt ctttagagct 2941 taggtcttgt ttttctgctt gttagtgcca aatatataat gctatcatat agcaaaaata 3001 agaaaataac tcgattctgt tataaatttc taaaaatctg cctaattttt atcaaattaa 3061 tttagttttc ttaggcattt ttatttttaa ttgaagaaaa taactagagt ctgcatt