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LOCUS XM_017143172 3732 bp mRNA linear INV 09-DEC-2024 protein (SWIP), mRNA. ACCESSION XM_017143172 VERSION XM_017143172.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017143172.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3732 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3732 /gene="SWIP" /note="strumpellin and WASH-interacting protein; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108058437" CDS 60..3371 /gene="SWIP" /codon_start=1 /product="WASH complex subunit 4" /protein_id="XP_016998661.2" /db_xref="GeneID:108058437" /translation="MKEEQSSMSIFAEDILREYGAFISEHDGKLKILRDKVPNSDDLE PTTCIYMSPVIEVNFVGSERIGLPERNFEESELVANKPLTTFANLCNQCRNLSRKAKR FQLAFLFSDFRLENENSSAEESLVRMSSSMDFFCQVYFLLKRMIVILQNLWRQLGASV CLPVDIHEVHVFAVFDAMTEILEHVVVFNELANQSKISTMWALYKKWLINLSNQEQST NLELRGLSTSLLDIESLITNDFFRILLDNLMELKREFSLNAVNHLTQHSNAYIRKLLL DIDANAGNEYRNYEEPQHIIRLTAFAAVVHEFGIQMEGKLVKSLVDSLTRHKQVPLNR SVFWSPAAFLSQHAKTLMKPPPSNKSQDPGSQGLKVHSSVLEKLRLGDQRSCRQLGSQ ISLWSIRMQRVFDVGVFGHLKTFSQLILSGHSLADQATQLAGSLINRHAALMTPLTKT DWFVVARLLQYLNVLQKTFESQQISFVRFISSLLQWQKQKVLHLLHTTKKRIVDLKLL QRKMNFLSTMKLAEKSIVGFPSQQRLTFMNLSLGEFLDNRLLPADNQKLIRSILVRAN NISHFMRDIRGQESSGLVYNHWFLSTAVLKEYTELQRNPYALQNIVSASHHLDKIVAL FRDSSSRCPKQSANDLIIEFLSNHLEFFLRVEALSHLFQDQDQPFQQSALDYRLCINA VSAESGGDYSIIRDNLENYFTATFYNLTTIAPHDWKSYEKMRHLANKVLQLRPIDDHL PNQIIDQGIDVLQIMRNIHTFASSYAYNMNLQLFVETHSRGKHLDIIGTRHVANSVQT HGTGIINTTVNFIYQFLRQKFYTFSTFLHDEQIKSRLLKELRFHSEHRHSKPYQSYPY ERADSFLKKIRKLGCSGNGETYMDLFRKVITQVGNAVGYVRLLQAGSKNANFRSRSYK TRFDSNFSAAGSKVHAETEGSIREYEKSLGHMKECYSDSTNYFKLLLQGFQPFLCNPN NQHLRTFYLITPALIMNYIDHRVKQKLKIHKKDQTRISLFEDGFAIGLVYILNMLNQQ AEFHELGWSQTTARHLQEERSKVRDILAGQQQSQLDEKLRQTVAITERHVNAYEHEYN LLYATLSSSEIFFFQ" misc_feature 117..1793 /gene="SWIP" /note="WASH complex subunit 4, N-terminal; Region: WASH-4_N; pfam14745" /db_xref="CDD:434178" misc_feature 1818..2798 /gene="SWIP" /note="WASH complex subunit 7; Region: WASH-7_mid; pfam14744" /db_xref="CDD:434177" misc_feature 2853..3362 /gene="SWIP" /note="WASH complex subunit 7, C-terminal; Region: WASH-7_C; pfam14746" /db_xref="CDD:464293" polyA_site 3732 /gene="SWIP" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 acttgaaatg tcccatctct gaattagtaa taaacaataa caaaggcaaa gcaattaaaa 61 tgaaggaaga gcaaagctct atgtccattt ttgccgagga tattctgagg gaatacggtg 121 cctttatatc ggaacatgat gggaaactga agatcctgcg ggacaaagtc ccgaattcgg 181 atgacttgga gcccacaact tgtatttata tgtcgcctgt gatagaggtt aacttcgtgg 241 gcagcgaaag gatcgggctg ccggaaagga actttgagga atccgagctg gtggccaata 301 aacccctgac cactttcgcc aatctgtgca atcagtgccg gaatttgtct cgcaaagcga 361 aacgctttca actggccttt ctattcagcg attttcgttt ggagaacgag aactccagcg 421 ccgaggaatc cctggtccgc atgagcagct ccatggactt cttttgtcag gtttactttt 481 tgctcaaacg catgattgtg atactccaga acctgtggcg acaattgggc gcttccgtct 541 gcctccccgt cgatatccac gaagtccatg tattcgctgt atttgatgcc atgactgaga 601 ttctggagca tgtagtggtc ttcaacgaac tggcgaacca atcgaagatc tccaccatgt 661 gggcgctcta caagaagtgg ctaatcaacc tgtccaatca ggagcaatcc acgaacttgg 721 agctccgcgg cctcagtaca tcgctgcttg acattgaaag tctgattaca aacgactttt 781 ttcggattct gctcgataac ctgatggaac tgaagaggga attcagtctg aacgctgtga 841 accacctcac ccagcattcc aatgcctaca tacgcaaact gctgctcgat atcgatgcga 901 atgcgggcaa cgagtaccgg aactacgagg aaccccagca catcattcgt ctaactgcct 961 tcgcggcggt tgtccatgag tttggcatcc agatggaggg aaagctggtc aagagcctcg 1021 tggactcgtt aaccaggcac aaacaggtgc ccctgaaccg cagtgtcttc tggtcgccag 1081 ctgcctttct ctcgcaacat gcaaagaccc tgatgaagcc gccgccaagc aacaaatccc 1141 aagatcccgg atcccagggc ctaaaggtgc atagctcagt gctggagaag ctgcggctcg 1201 gcgatcagag gagctgccgc cagttgggca gccagatatc gctgtggtcc atccgcatgc 1261 agcgggtctt cgatgtcggc gtctttgggc atctcaagac cttctcgcag ctcatcctca 1321 gtggccattc gttggccgac caggctaccc aactggccgg atcgctgatc aatcgccatg 1381 cggctctgat gacgccgctg actaagacag actggtttgt ggtcgcccga ttgctacagt 1441 acctgaatgt tctgcagaag accttcgagt cgcagcaaat cagcttcgtg cgcttcatca 1501 gctcactgtt gcagtggcag aagcaaaagg tcctacacct gctgcacacc acaaagaagc 1561 ggatcgtcga cctgaagttg ctgcagcgca agatgaactt cttgtccaca atgaagctgg 1621 ccgagaaatc gattgtgggc tttccgagcc agcaacggct gacttttatg aatctgtcgc 1681 ttggcgagtt tctggacaat cgtttgctgc ccgccgacaa tcagaagctg atccgatcga 1741 ttctggtgcg agccaataac attagccact ttatgcgcga catcaggggg caggagtcgt 1801 ctggtctggt ctacaatcac tggttcctca gcacggcggt gctgaaggaa tacaccgagc 1861 tgcagcgcaa tccgtacgcc cttcagaata ttgtgtcggc tagccatcat ctggacaaga 1921 tagtggcctt atttagggac tctagttcga ggtgtcccaa gcaatcggcc aatgacctga 1981 ttatcgagtt cttgagcaac cacttggagt tcttcctgcg ggtcgaggcc ctgtcgcatt 2041 tgtttcagga ccaggaccaa ccattccagc aaagtgcctt agactatcgc ctctgcatca 2101 acgcagtgtc tgctgaaagc ggcggagatt atagtattat aagagataac ttggagaact 2161 atttcactgc aacgttctac aatttaacga caatcgcccc gcacgactgg aagtcgtacg 2221 aaaagatgcg tcatctggcc aacaaggtct tgcagctgcg gcccatcgat gatcacctgc 2281 ccaaccagat tattgaccag ggcatcgacg tgctgcagat catgcgcaac atccacacgt 2341 tcgcctcctc gtatgcctac aatatgaacc tgcagctgtt cgtggagacg cacagcaggg 2401 gcaagcacct ggacatcatc ggcacccggc acgtggccaa ttcggtgcag acgcacggca 2461 cggggattat caacaccacc gtcaacttta tctaccagtt tctgcgccag aagttctaca 2521 ccttctccac cttcctgcac gacgagcaga tcaagtcgcg tctgctgaag gagctgcgtt 2581 tccactcgga gcacaggcac agcaagccct accaatcgta tccctacgag cgtgccgaca 2641 gctttctcaa gaagatccga aagctgggct gttcgggcaa tggcgagacc tacatggatc 2701 tattcaggaa ggttatcact caagtgggca acgctgtggg ctatgtgcgc cttctgcagg 2761 cgggaagcaa gaatgcgaac ttcaggagtc gttcgtacaa gaccagattc gacagcaact 2821 tcagtgccgc aggttcaaag gtgcacgcgg aaacggaggg ctccatcagg gagtacgaaa 2881 agagcctggg tcacatgaag gaatgctact cggacagcac aaattacttt aagctcctgc 2941 tgcagggctt tcagcccttc ctgtgcaacc cgaataacca gcacttgaga accttctacc 3001 tcatcacacc ggcgctcata atgaactaca ttgaccaccg ggtcaagcag aagctgaaga 3061 tccacaagaa ggaccaaacg aggatctcgc tgttcgagga tggcttcgcc attggactcg 3121 tctacatcct gaacatgctg aaccaacagg ccgagttcca cgagctgggc tggagccaaa 3181 cgaccgcgcg gcatctgcag gaggagcgct ccaaggtgcg cgacatcctg gctggacagc 3241 agcagtccca gctggacgag aagctccgcc agacggtggc gataaccgaa cgacatgtga 3301 acgcctacga acatgaatac aatctgcttt atgccactct aagtagctcc gaaatattct 3361 tcttccaata aaaccaagaa ataatcagtt gttggttgtc gtttattttt acttttatta 3421 agacgaaaat acaattccga tttcggaaaa catcgctgaa cgttggaata tatattgtgg 3481 ataattagct ttagagtttt gggccaattt ctgtaacatc taacattttg ctaatccccg 3541 attataatgc tcaatgtttg tgggtgtcgt ctcgtttctt tttctttatc tttctatgga 3601 aatgcgaaag gctacatgtt tgaatcgttt aaacactgtc actggaggct cgttaatttg 3661 atatattgaa ttttggcccc catatacaat ttattggcca aaagacaaca acccaatggg 3721 aatatattta aa