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LOCUS XM_017143170 3788 bp mRNA linear INV 09-DEC-2024 (LOC108058435), transcript variant X4, mRNA. ACCESSION XM_017143170 VERSION XM_017143170.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017143170.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3788 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3788 /gene="LOC108058435" /note="RNA-binding protein 25; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108058435" CDS 130..3174 /gene="LOC108058435" /codon_start=1 /product="RNA-binding protein 25 isoform X1" /protein_id="XP_016998659.2" /db_xref="GeneID:108058435" /translation="MSYPPRAPMPPYMNASIPPPHMMQNMGNPPQRNFRNSATISSQP TVYHRPPEPQPQFRGPIITVFVGNISERVPEALLKRILATCGVVINWKRVSTFGFCEF DGPIAAMRAVRLLSEMEIDGKKLVAKVDAKNKVLIEDYKEQECKNGDRSNSVDEKTED EYAISQMHEFLEEHKHEFDGFDGSNRPDLYGSSSRNKKTRREDDIKIKVLNDNALEEE KRNLISSEIGKFRMRAEADEHRKELEKEKEKEKLAASKEKERDKERKKHQREKERKSS TSKSGSSSGAAATTEKAAASATDNPEAAEKSDKDPAAAVVKDAKEPKEPKESSSSSTG RSASSRKDPPAAESTQKERRSDSKETRRRRSKSRSKDRERERERERELRELRDKERER ERERERERERERNEMRERERNEMRERERERERERERERDREREREREREEKLSAKPVR DSRREKEMEDELRERKKAEKKAREKEAAYQVRLSNWEIREKRKSKENEKYRLKELLRQ EERESDAKRLKEFVEDYDDERDDSLYYRGRELQQRLAERVREADADSKDREKEADELA ELKSKFFSGEYENPSLEFEKARREIEKLYEPRILINVNLEAAAATAAVHQRKQTSAAS ATGEGAAKELKSQQLDSYDPDMAGMNDDDSMSNDDRGGGSLADTASNASDGGYAAKNN NNDNKSLSNSLSRQNSESRDSLAQIHTPTQSAMHANDQDALLPSATPPMTMPLISLTL GNNLKMKKKIEATGVFVNDDDNDENINPKKRKLVPLDYDDNMSNTTPSSHPASNAGGL GNSSSSSGSNHNNNSSSSSADRQSSAVSAATAAAAAVSQKIAQSSATGSGSNTSGGKN NGNGKQSSSGSSKHGKNEAAASASSGADAAAGTNTKKDENGAKVYDEKRRHIKSIIDR IPTQKEELFNYKLDRNEIDSGLMERKIRPWINKKIIEYIGEPEPTLVDFICSKVLAGS PPQSILDDVQMVLDEEAEVFVVKMWRLLIYELDAKKSGIAGK" misc_feature 316..540 /gene="LOC108058435" /note="RNA recognition motif (RRM) found in eukaryotic RNA-binding protein 25 and similar proteins; Region: RRM_RBM25; cd12446" /db_xref="CDD:409880" misc_feature 2926..3141 /gene="LOC108058435" /note="domain in splicing factors; Region: PWI; smart00311" /db_xref="CDD:214609" polyA_site 3788 /gene="LOC108058435" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 atcgatggct taacagctct accgatagca gcttgctagc agctaccatc tctagaccag 61 agcagcggcc gcagaaaaaa aaggagattc ggacacaaag gatacgcggg cggaactgaa 121 acgcacaaga tgtcctaccc accgcgggcg cccatgccgc cctacatgaa tgcatccata 181 ccgccgccgc acatgatgca gaacatgggc aatccgccgc aaaggaactt tcgcaactcg 241 gcgaccatca gctcacagcc gacagtctac catcgtccgc cggagccgca gccgcagttc 301 cgcggcccca tcatcaccgt cttcgtgggc aacatcagcg aacgcgtccc ggaggcgctg 361 ctcaaacgca tcctggccac ctgcggcgtg gtgatcaact ggaagcgggt atccacattc 421 ggcttctgcg agttcgacgg acccattgca gccatgcggg ctgtgcgcct gctcagcgag 481 atggagatcg atggcaagaa gctggtggcc aaggtggatg ccaagaacaa ggtgctcatc 541 gaggactaca aggagcagga gtgcaagaac ggcgaccgct ccaattcggt ggacgagaag 601 accgaggacg agtacgccat cagccagatg cacgagtttc tcgaggagca caagcacgag 661 ttcgacggct tcgacggcag caatcggccc gatctgtacg gcagcagcag tcgcaacaag 721 aagacgcgcc gcgaggacga catcaagatc aaggtgctga acgacaatgc tttggaggag 781 gagaagcgca atctgattag cagcgagatt ggaaagtttc ggatgcgcgc cgaggccgac 841 gagcaccgca aggagctgga gaaggagaag gaaaaggaga agctggcagc cagcaaggag 901 aaggagcgcg acaaggagcg caagaagcat caacgcgaaa aggagcgcaa gtcctcgacc 961 agcaaatcgg gtagttcatc cggggcagcg gccaccacag aaaaagcagc ggcttcagct 1021 accgataacc ccgaagcagc ggaaaagtcg gacaaagatc ccgctgccgc tgtcgtcaag 1081 gatgccaagg aaccgaaaga acccaaggaa tcctcatcct catcgaccgg acgcagtgcc 1141 agcagtcgca aggatcctcc cgccgcggag agtacacaga aggagcggcg ctcggattcc 1201 aaggagacgc gtcgccgtcg ctccaagtcc cgctccaagg atcgcgagcg ggagcgggaa 1261 cgcgagcgcg agctgcgtga gctgcgcgac aaggagcgcg agcgagaacg cgaaagggaa 1321 cgcgagcgtg agcgcgaacg caacgagatg cgtgagcgag agcgcaacga gatgagggag 1381 cgcgaacggg aacgcgaaag agagcgcgag cgcgagcgag accgagaacg cgagcgggag 1441 cgggagcgcg aggaaaagct gtccgcaaag ccagtgcgcg attcgcggcg cgaaaaggag 1501 atggaggacg agctgcggga gcgcaagaag gccgagaaga aggcgcgcga gaaggaggcc 1561 gcctaccagg tgcgcctgtc caactgggag atacgcgaga agcgcaagtc caaggaaaat 1621 gagaagtacc gccttaagga gctgctgcgg caggaggaac gcgagagcga cgccaagcga 1681 ctgaaggagt ttgtcgagga ctacgacgat gagcgcgacg attcgctgta ttatcgcggc 1741 cgcgagctgc agcagcgttt ggcggagcga gtgcgtgagg cggatgccga ttccaaggat 1801 cgcgagaagg aggccgacga actggccgag ctcaagtcga agttctttag cggcgagtac 1861 gagaatccct cgctggagtt cgagaaggcg cgccgcgaga tcgagaagct ctacgagccg 1921 cgcattctga tcaatgtcaa cctggaagcg gcggcggcca cagcggccgt tcaccagcgc 1981 aagcagactt ccgccgcctc ggcgacgggc gaaggtgctg ctaaggagct aaagagccag 2041 cagctggaca gctatgatcc cgatatggcc ggcatgaacg acgacgactc catgtcgaac 2101 gatgatcgtg gcggcggctc cttggccgat acagcctcca atgccagcga tggtggctat 2161 gcggcgaaga acaacaataa cgataataag tcactgtcga acagtttgag ccggcagaac 2221 agtgagtcca gggattcgct ggcccagatt catacgccca cgcagagtgc catgcatgcg 2281 aatgatcagg atgccctgct gccctccgcc acgccgccca tgaccatgcc cctcatctcg 2341 ctgacgctgg gcaacaacct caagatgaag aagaagatcg aggccacggg cgtgtttgtg 2401 aacgacgacg ataacgatga gaatatcaat cccaagaagc gcaagctggt gccgctagac 2461 tacgatgaca acatgagcaa caccacacct tcttcccatc cggccagcaa tgccggcgga 2521 ttgggaaata gcagcagcag cagcggcagc aatcacaaca acaacagcag cagcagctcg 2581 gcggatcgcc aaagctccgc cgtatcggcg gccaccgctg cagccgctgc cgttagccag 2641 aagattgccc aatcctccgc aacgggctcg ggatcaaata cttcgggtgg caagaacaac 2701 ggcaacggca aacagagtag cagcggcagc agcaaacatg gtaagaatga ggcagctgca 2761 tctgcgagca gtggcgcaga tgctgccgcc ggtacaaaca ccaaaaagga tgagaatggt 2821 gctaaggtgt atgatgaaaa acggcggcat ataaaaagca ttattgacag gatacccacg 2881 caaaaggagg agctatttaa ttataagctc gaccgcaacg agattgacag cggtctaatg 2941 gaacgcaaga tacgtccatg gatcaataag aaaatcatcg agtatatcgg tgagccggag 3001 ccgacgctag tggactttat atgttccaaa gtgttggccg gcagtccgcc gcagagtatc 3061 ttggacgatg tgcaaatggt actcgacgag gaggcggagg tgtttgtggt caagatgtgg 3121 cgactgctca tctacgaact ggacgccaag aagagcggca ttgcggggaa gtagaacgat 3181 gacgatgatc cgcactgatc accgggggaa aataactggg gcggggagcg ggtgcagatc 3241 gagggatcga acgagaggag ctgctgcgcg aatatagact ctaagttact ttatgcaact 3301 tactttgcga ttacacacac aactttgtac ataaaaggcg tgctcccgaa attgttgcta 3361 ccgccaaatg tccaggtttg ttttataagc ttcgacgaaa cttctcgtgc aaatcaaatc 3421 aaaaagaaaa tttatgtaaa acgaaaatcg gaagcaaaag cgcagcctcc tccctcaatg 3481 atttctcaat ttctcaccgt gttagcgtta attgctaaaa ttaatcatcg attactgtaa 3541 atacacacta aactcactta taaatttaca ccagcagaaa caaacaagcg aaaaaagaaa 3601 gccgtacata gacacataaa agcgtagccc atgtacaatt cagttggttt ctgatccaat 3661 tctccccctt tatttgttgc gatttcgaaa atcgatttcc atctacgcaa cagctctttt 3721 tttcgaaaaa cgagcgcaaa cagaaaactg tcttcatttt aataaaacaa tgaaaagaaa 3781 attcaaaa