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LOCUS XM_017143168 4053 bp mRNA linear INV 09-DEC-2024 (LOC108058435), transcript variant X1, mRNA. ACCESSION XM_017143168 VERSION XM_017143168.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017143168.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4053 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4053 /gene="LOC108058435" /note="RNA-binding protein 25; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108058435" CDS 395..3439 /gene="LOC108058435" /codon_start=1 /product="RNA-binding protein 25 isoform X1" /protein_id="XP_016998657.2" /db_xref="GeneID:108058435" /translation="MSYPPRAPMPPYMNASIPPPHMMQNMGNPPQRNFRNSATISSQP TVYHRPPEPQPQFRGPIITVFVGNISERVPEALLKRILATCGVVINWKRVSTFGFCEF DGPIAAMRAVRLLSEMEIDGKKLVAKVDAKNKVLIEDYKEQECKNGDRSNSVDEKTED EYAISQMHEFLEEHKHEFDGFDGSNRPDLYGSSSRNKKTRREDDIKIKVLNDNALEEE KRNLISSEIGKFRMRAEADEHRKELEKEKEKEKLAASKEKERDKERKKHQREKERKSS TSKSGSSSGAAATTEKAAASATDNPEAAEKSDKDPAAAVVKDAKEPKEPKESSSSSTG RSASSRKDPPAAESTQKERRSDSKETRRRRSKSRSKDRERERERERELRELRDKERER ERERERERERERNEMRERERNEMRERERERERERERERDREREREREREEKLSAKPVR DSRREKEMEDELRERKKAEKKAREKEAAYQVRLSNWEIREKRKSKENEKYRLKELLRQ EERESDAKRLKEFVEDYDDERDDSLYYRGRELQQRLAERVREADADSKDREKEADELA ELKSKFFSGEYENPSLEFEKARREIEKLYEPRILINVNLEAAAATAAVHQRKQTSAAS ATGEGAAKELKSQQLDSYDPDMAGMNDDDSMSNDDRGGGSLADTASNASDGGYAAKNN NNDNKSLSNSLSRQNSESRDSLAQIHTPTQSAMHANDQDALLPSATPPMTMPLISLTL GNNLKMKKKIEATGVFVNDDDNDENINPKKRKLVPLDYDDNMSNTTPSSHPASNAGGL GNSSSSSGSNHNNNSSSSSADRQSSAVSAATAAAAAVSQKIAQSSATGSGSNTSGGKN NGNGKQSSSGSSKHGKNEAAASASSGADAAAGTNTKKDENGAKVYDEKRRHIKSIIDR IPTQKEELFNYKLDRNEIDSGLMERKIRPWINKKIIEYIGEPEPTLVDFICSKVLAGS PPQSILDDVQMVLDEEAEVFVVKMWRLLIYELDAKKSGIAGK" misc_feature 581..805 /gene="LOC108058435" /note="RNA recognition motif (RRM) found in eukaryotic RNA-binding protein 25 and similar proteins; Region: RRM_RBM25; cd12446" /db_xref="CDD:409880" misc_feature 3191..3406 /gene="LOC108058435" /note="domain in splicing factors; Region: PWI; smart00311" /db_xref="CDD:214609" polyA_site 4053 /gene="LOC108058435" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ctaccgatag cagcttgcta gcagctacca tctctagacc agagcagcgg ccgcagaaaa 61 aaaaggagat tcggtaattt acgcgtggat ttagcacgcg ccgtgaaccc agcagttgca 121 gcaggctcag cccagccgac ccgagaccct tttagttatc cttgcgggct cgcagctcca 181 ggacgaccac caaccgcact cacatttgcc actccgtgtg gcgtttgcgc ccatccgtgt 241 gtgtgtgtgt gtgtgctggc gtgtatgtgt gcctgcctgt cagtgcagtt tgcgtgtgtg 301 tgtgtgaatt gtcggcttta attttgcaag cacgctaaag ttgtgtgttt ttaaaggaca 361 caaaggatac gcgggcggaa ctgaaacgca caagatgtcc tacccaccgc gggcgcccat 421 gccgccctac atgaatgcat ccataccgcc gccgcacatg atgcagaaca tgggcaatcc 481 gccgcaaagg aactttcgca actcggcgac catcagctca cagccgacag tctaccatcg 541 tccgccggag ccgcagccgc agttccgcgg ccccatcatc accgtcttcg tgggcaacat 601 cagcgaacgc gtcccggagg cgctgctcaa acgcatcctg gccacctgcg gcgtggtgat 661 caactggaag cgggtatcca cattcggctt ctgcgagttc gacggaccca ttgcagccat 721 gcgggctgtg cgcctgctca gcgagatgga gatcgatggc aagaagctgg tggccaaggt 781 ggatgccaag aacaaggtgc tcatcgagga ctacaaggag caggagtgca agaacggcga 841 ccgctccaat tcggtggacg agaagaccga ggacgagtac gccatcagcc agatgcacga 901 gtttctcgag gagcacaagc acgagttcga cggcttcgac ggcagcaatc ggcccgatct 961 gtacggcagc agcagtcgca acaagaagac gcgccgcgag gacgacatca agatcaaggt 1021 gctgaacgac aatgctttgg aggaggagaa gcgcaatctg attagcagcg agattggaaa 1081 gtttcggatg cgcgccgagg ccgacgagca ccgcaaggag ctggagaagg agaaggaaaa 1141 ggagaagctg gcagccagca aggagaagga gcgcgacaag gagcgcaaga agcatcaacg 1201 cgaaaaggag cgcaagtcct cgaccagcaa atcgggtagt tcatccgggg cagcggccac 1261 cacagaaaaa gcagcggctt cagctaccga taaccccgaa gcagcggaaa agtcggacaa 1321 agatcccgct gccgctgtcg tcaaggatgc caaggaaccg aaagaaccca aggaatcctc 1381 atcctcatcg accggacgca gtgccagcag tcgcaaggat cctcccgccg cggagagtac 1441 acagaaggag cggcgctcgg attccaagga gacgcgtcgc cgtcgctcca agtcccgctc 1501 caaggatcgc gagcgggagc gggaacgcga gcgcgagctg cgtgagctgc gcgacaagga 1561 gcgcgagcga gaacgcgaaa gggaacgcga gcgtgagcgc gaacgcaacg agatgcgtga 1621 gcgagagcgc aacgagatga gggagcgcga acgggaacgc gaaagagagc gcgagcgcga 1681 gcgagaccga gaacgcgagc gggagcggga gcgcgaggaa aagctgtccg caaagccagt 1741 gcgcgattcg cggcgcgaaa aggagatgga ggacgagctg cgggagcgca agaaggccga 1801 gaagaaggcg cgcgagaagg aggccgccta ccaggtgcgc ctgtccaact gggagatacg 1861 cgagaagcgc aagtccaagg aaaatgagaa gtaccgcctt aaggagctgc tgcggcagga 1921 ggaacgcgag agcgacgcca agcgactgaa ggagtttgtc gaggactacg acgatgagcg 1981 cgacgattcg ctgtattatc gcggccgcga gctgcagcag cgtttggcgg agcgagtgcg 2041 tgaggcggat gccgattcca aggatcgcga gaaggaggcc gacgaactgg ccgagctcaa 2101 gtcgaagttc tttagcggcg agtacgagaa tccctcgctg gagttcgaga aggcgcgccg 2161 cgagatcgag aagctctacg agccgcgcat tctgatcaat gtcaacctgg aagcggcggc 2221 ggccacagcg gccgttcacc agcgcaagca gacttccgcc gcctcggcga cgggcgaagg 2281 tgctgctaag gagctaaaga gccagcagct ggacagctat gatcccgata tggccggcat 2341 gaacgacgac gactccatgt cgaacgatga tcgtggcggc ggctccttgg ccgatacagc 2401 ctccaatgcc agcgatggtg gctatgcggc gaagaacaac aataacgata ataagtcact 2461 gtcgaacagt ttgagccggc agaacagtga gtccagggat tcgctggccc agattcatac 2521 gcccacgcag agtgccatgc atgcgaatga tcaggatgcc ctgctgccct ccgccacgcc 2581 gcccatgacc atgcccctca tctcgctgac gctgggcaac aacctcaaga tgaagaagaa 2641 gatcgaggcc acgggcgtgt ttgtgaacga cgacgataac gatgagaata tcaatcccaa 2701 gaagcgcaag ctggtgccgc tagactacga tgacaacatg agcaacacca caccttcttc 2761 ccatccggcc agcaatgccg gcggattggg aaatagcagc agcagcagcg gcagcaatca 2821 caacaacaac agcagcagca gctcggcgga tcgccaaagc tccgccgtat cggcggccac 2881 cgctgcagcc gctgccgtta gccagaagat tgcccaatcc tccgcaacgg gctcgggatc 2941 aaatacttcg ggtggcaaga acaacggcaa cggcaaacag agtagcagcg gcagcagcaa 3001 acatggtaag aatgaggcag ctgcatctgc gagcagtggc gcagatgctg ccgccggtac 3061 aaacaccaaa aaggatgaga atggtgctaa ggtgtatgat gaaaaacggc ggcatataaa 3121 aagcattatt gacaggatac ccacgcaaaa ggaggagcta tttaattata agctcgaccg 3181 caacgagatt gacagcggtc taatggaacg caagatacgt ccatggatca ataagaaaat 3241 catcgagtat atcggtgagc cggagccgac gctagtggac tttatatgtt ccaaagtgtt 3301 ggccggcagt ccgccgcaga gtatcttgga cgatgtgcaa atggtactcg acgaggaggc 3361 ggaggtgttt gtggtcaaga tgtggcgact gctcatctac gaactggacg ccaagaagag 3421 cggcattgcg gggaagtaga acgatgacga tgatccgcac tgatcaccgg gggaaaataa 3481 ctggggcggg gagcgggtgc agatcgaggg atcgaacgag aggagctgct gcgcgaatat 3541 agactctaag ttactttatg caacttactt tgcgattaca cacacaactt tgtacataaa 3601 aggcgtgctc ccgaaattgt tgctaccgcc aaatgtccag gtttgtttta taagcttcga 3661 cgaaacttct cgtgcaaatc aaatcaaaaa gaaaatttat gtaaaacgaa aatcggaagc 3721 aaaagcgcag cctcctccct caatgatttc tcaatttctc accgtgttag cgttaattgc 3781 taaaattaat catcgattac tgtaaataca cactaaactc acttataaat ttacaccagc 3841 agaaacaaac aagcgaaaaa agaaagccgt acatagacac ataaaagcgt agcccatgta 3901 caattcagtt ggtttctgat ccaattctcc ccctttattt gttgcgattt cgaaaatcga 3961 tttccatcta cgcaacagct ctttttttcg aaaaacgagc gcaaacagaa aactgtcttc 4021 attttaataa aacaatgaaa agaaaattca aaa