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LOCUS XM_017143163 3258 bp mRNA linear INV 09-DEC-2024 ACCESSION XM_017143163 VERSION XM_017143163.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017143163.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3258 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3258 /gene="kat80" /note="katanin 80; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108058429" CDS 317..2752 /gene="kat80" /codon_start=1 /product="katanin p80 WD40 repeat-containing subunit B1" /protein_id="XP_016998652.2" /db_xref="GeneID:108058429" /translation="MALPRKLISKIYDIKAHDSRVTSLDLGETGRVLVTGGEDRNVNL WAIGQNECFMSLTGHNRSIDCVRFAYKDNFVYSADDIGIIRRWDLNSQKIYSTLNGHM KSVRTLDFNPSGEYVVSGSNDTTVRLWDVQNENNCIKVCRGHMSHVNSVKFSPDGLWI ASAGLEGSILIWDIRKSKQIMEFIADPPVTAITCVQFHPFEFLLAAGRIDGTVSIYDL EHQQLVSQTTHFYGQAIKCITFSDNGECLFVGSSSGISVIGWEPDRELDHIKSTWSTL ADMKVVNNKLICGCHEVDTVAINTISLDRVIPFYQPPNSLPNFKHNSTNRKSFTRGNQ KFRLSLAGGSKPAQVQEEHEHEGSKSGLSSPNYSLEVVNEAVLESSAETSPMSSLPPV GKFSRMPDNMASYAGGSYAAIDTRLMSMNEPPSSLHKPDSIYSIYSEEAAAAAAAAGD LQQLEFNLNDSNPPILNNYDNYEMAEDFPVNQNLNYITSSYKQVPSAAAAAAATSTIN ASSKSIKKTTTTSLHKRSTTSMASSKQTSTGIGIFGGSKLSQQVSSVSSMELHKLDDN MVLKKSSSSNVVNKNKRPQSQFSKENGGGGQQARNINVEIITKPPMRSRTTLDMRTSH HQAKSTQEKQMQQPVNNRIMMDDHDFDMLSRSHEAVLQELSNRQSSLDLLRNSMRSHD VLGALRQAKNCGKSIFIDLLGAILEKPSSWNLDFCMFVLPEIYELLQSQHKFHFTRAC DTLRIILSNFLPTIQENLDSWAANGLGVDVTREDRQRKCAECQRWLLQIKNLPESTHF GSTLSQLQNIIIF" misc_feature <347..1105 /gene="kat80" /note="WD40 repeat [General function prediction only]; Region: WD40; COG2319" /db_xref="CDD:441893" misc_feature 377..490 /gene="kat80" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 506..616 /gene="kat80" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 629..742 /gene="kat80" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 761..868 /gene="kat80" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 890..997 /gene="kat80" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1019..1147 /gene="kat80" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1169..1246 /gene="kat80" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 2279..2743 /gene="kat80" /note="con80 domain of Katanin; Region: Katanin_con80; pfam13925" /db_xref="CDD:464044" ORIGIN 1 tttttgcatt tgtttttgtc catccgaatt gtccgatttt acagttagac tttatgtccc 61 ctgtacaatg cgatcgcggt gatatcggct tataggctta taacggtgtt gtgtccaatg 121 tgcttgcgtt ccagtgcgtt tcgtgttcgt tttcgttgcc gttcccgtgg ctgaagccaa 181 agacacacca gacagctgat catcacagac tttggctcac acctgctaca aaaagacaat 241 aattatttaa aaacctggca ctcgggggcc atttagcagc tgccagtgta tttatataac 301 agcaatttga ttgattatgg cgctgcccag aaaactgata tcgaagatct acgatataaa 361 ggcacacgat agcagagtta ctagtcttga tcttggagaa acaggccgag tgctggtcac 421 cggaggagag gatcggaatg tgaacctctg ggcaattggt cagaatgagt gttttatgtc 481 tctaactggt cacaatcgct ccatcgattg tgtccgcttt gcgtataagg ataactttgt 541 ctactccgcc gacgacatcg gaataatacg gagatgggat ctgaactcgc agaaaatcta 601 ctccacatta aatggccaca tgaagagtgt tcgcactctg gactttaatc cctcgggaga 661 gtatgtggtc tccggaagca acgatacgac cgtcagactt tgggatgtgc agaacgagaa 721 caactgcatc aaggtgtgtc gcggtcacat gtcgcacgtg aactctgtga aattctcgcc 781 cgatggactt tggatcgcct ccgctggctt ggagggctcc attctcatct gggatatacg 841 gaagagcaag cagattatgg aattcatagc agatccgccg gtcacggcca tcacatgcgt 901 tcaattccat cccttcgagt tcctgctggc cgccggccga atcgatggca ccgtttccat 961 ctacgatctg gagcaccagc agctcgtctc gcagaccact cacttttatg gccaggccat 1021 taagtgtata accttcagtg ataatggcga gtgtctcttt gtgggcagtt cttcgggcat 1081 ttcggttatt ggttgggagc cggatcgtga gctagatcac ataaaaagca cctggtccac 1141 gttggcggac atgaaagtgg tcaacaataa gttgatctgt ggctgccatg aggtcgacac 1201 cgttgcgatc aacaccatca gtctggaccg cgtgataccg ttctaccagc cgcccaactc 1261 tctgcccaac ttcaagcaca actcgacgaa ccgaaagagt ttcacgcgcg gcaaccaaaa 1321 gttcagactt tccctggctg gcggctccaa gcccgcacag gtgcaggagg agcacgagca 1381 cgagggcagc aagagtggac tgtcgtcgcc caactacagt ctggaggtgg tcaacgaggc 1441 tgtgctggag tcgtcggcgg aaacgtcgcc gatgtcctcg ttgccaccgg tgggaaagtt 1501 ctccaggatg cccgacaata tggccagcta tgccggcggc agctatgccg ccatcgatac 1561 acgcctgatg tcgatgaacg agccacctag ttcgctgcac aagccggaca gcatctacag 1621 catctactcg gaggaggcgg cggcggcggc agcggcagcg ggagacttgc agcagttgga 1681 gttcaatctg aacgacagca atccgccgat actcaacaac tatgacaact acgagatggc 1741 cgaggacttt ccggtcaatc agaaccttaa ctacattacc agtagctata agcaagtgcc 1801 ctccgccgcc gccgctgccg ctgccacctc gaccatcaac gcttcgtcca agtcgatcaa 1861 gaagaccacg accaccagcc tgcacaagag gagcacaacc agcatggcca gctccaagca 1921 gacctcgacg ggcattggaa tctttggtgg cagcaagctc agccagcagg tctcctcggt 1981 tagctccatg gagctgcaca agctggacga caatatggta ctgaagaagt cctcctcatc 2041 gaatgtcgtc aacaagaaca agcggccgca gagccagttc agcaaggaga acggtggtgg 2101 tggtcagcag gcaaggaata tcaatgtgga gatcatcaca aagccaccga tgcgctcgcg 2161 caccactttg gacatgcgca cctcgcacca ccaggccaaa agcactcagg aaaaacagat 2221 gcagcagcca gtgaacaatc gcatcatgat ggacgatcac gactttgata tgctctcgcg 2281 gtcgcatgag gctgtgctgc aggagctgag caatcgacag tccagcctcg acttgctaag 2341 gaactccatg cggtcgcacg atgtgctggg cgcattgagg caagccaaga actgtggaaa 2401 atctattttc atagacctac ttggagccat actagagaaa ccgtcctcgt ggaacttgga 2461 tttctgcatg tttgtgctgc cagagattta cgaactgttg caaagccaac acaagttcca 2521 ctttaccaga gcctgtgata cactgcgcat tattctgtcg aacttcttgc caaccattca 2581 ggaaaacctc gactcctggg ccgccaatgg cctgggcgtg gacgtgaccc gcgaggatcg 2641 ccagcggaag tgcgccgagt gccagcgatg gttgctgcaa atcaagaacc tgcccgaaag 2701 cacccacttt gggtccacgc tctcacaact gcagaacata atcattttct aggggctacg 2761 cgtatgcata tccagctgta aattctcccc ggcgttcatc atcagatcag cagatcatcg 2821 tgaacggtac aaagatcgtc gtcagcgaaa gaaagaaaac caccagcttc ccaaaacccg 2881 attcacatac agatacaggg tcctggggag tggcctcatt tgtcgctcta agctgccaaa 2941 actaaggaat ttcaaacaat cgtttcaggg acagctgctc gcaaacgagc tctgccttcg 3001 aactctctgt ttatccagca ttaacacaac cctagggcct tttttccatc atcggcatgc 3061 tatgatacaa tcggcttgga agccttggaa ttccgtgctt ttggttttct cggttaacaa 3121 agctaccttc agtttagcct accatgagga tatgaaaacg ggccttagtt atttaatgat 3181 tcatactatt aatttgttat gcaaactaat ttataaacct attatttaca tagacctaag 3241 acttataaaa tttaaaaa