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LOCUS XM_017143159 4070 bp mRNA linear INV 09-DEC-2024 phosphatidylinositol-3,5-bisphosphate 3-phosphatase MTMR4 (LOC108058426), transcript variant X3, mRNA. ACCESSION XM_017143159 VERSION XM_017143159.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017143159.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4070 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4070 /gene="LOC108058426" /note="phosphatidylinositol-3,5-bisphosphate 3-phosphatase MTMR4; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:108058426" CDS 128..3739 /gene="LOC108058426" /codon_start=1 /product="phosphatidylinositol-3,5-bisphosphate 3-phosphatase MTMR4 isoform X2" /protein_id="XP_016998648.2" /db_xref="GeneID:108058426" /translation="MSDGSPPPSICFIRAAESYPKSQMEKEDSQLFVPFQELAGESIK YLGRTDDGVLALSNYRIFLSKKSTAYETYVPLGLIESVQVRDLFQLIVNCKDASTVRC SFQSAEQCADWQRRIHLLIGVPEALETLFAFPFYSWTCDVIGTGNGSAQANGNGLVAK DRSLTLQNGSAKPTVANPLAPVDPASDSNRLQRSVRYESDFKSEVARLGFDLKGSWRI STANADFKLCPSYPPKLLVPCCITDEMLHNVANFRGSRRLPAVVWRHQKSGAILARCS QPEVGWLGWRNTRDEQLLKALADACAFDRGEHARHSTIAAETKATQPTKGSSSKETNG QAAGLSGKSSPSLDDSSHEELTLDEIKKILIVDARSYTSAVTNRARGGGCECIEYYPC AEIEFMNLGNIHAIRKSFHAVRQLCASSPDDPNWFGQLEKTMWMQHLSGLLGATMTVV HTIEKNGRPVLVHCSDGWDRTPQIVATAQLCLDPYYRTVEGFRVLVEREWLNFGHKFA DRSGNGPNSDEVNERCPVFLQWLDLVHQIHRQYPCSFEFSISYLIKLAQHSLSCLFGT FLCNSLRERIENSVFDRTFSVWPFLAETMYRNPLYKHETEKVLWPAHSVRFLYFWSDV YLGSLGNKNGTDLPLLSNERQTGHNNGLMAKTRSSEDLTTNELGQSTISRRSSDPNLT VESIVTDCFNANSNSMFDIRTESENVQESAKDPKEFELDVTDATEVVLGPSSRSNNPI PEFHGDQSTAAANRDILQVESQSQRPSSLVSSTGRAVLAHSENDQNPVPLKSEDTSDI CRTLWGNGAIETSTDTLIPAEPVQKTNSSDKTDSSSSSRDRDRVRDRTPPIELAIGDK TAPAAPQSNKISHSYNNLPKVHMKPNAVICPQRGDAFPHHLDLQVPRESAANATSCKL EKLSNANANANGSECYHHHADEGLFISPDLQRFVGQSPFDAPAAQGGRIRRNTFGSSY SRDLKFTTENGSAHQFPSSGIISLPPTPFQERAQFTISCPDGLAHGLSEQNIRLHQIV QEHKLREEMLLREIHGMRLALLEKGCPSCNSIVSTNMEHENGSDIVENASTCSWEAVE ERSGPPSFAHPSSIQEKKASSVLWVPDHAVSRCSSCQTEFWLGRRKHHCRSCGEIFCA DCSEFWAPLPNEKLFNPVRLCGSCYTTVTTNVQEYAAVPPESQSQVKDEETSSSANS" misc_feature 203..541 /gene="LOC108058426" /note="Pleckstrin homology-like domain; Region: PH-like; cl17171" /db_xref="CDD:473070" misc_feature 725..1852 /gene="LOC108058426" /note="Myotubularin-like phosphatase domain; Region: Myotub-related; pfam06602" /db_xref="CDD:461958" misc_feature 3461..3640 /gene="LOC108058426" /note="FYVE domain found in myotubularin-related protein 4 (MTMR4) and similar proteins; Region: FYVE_MTMR4; cd15733" /db_xref="CDD:277272" misc_feature order(3461..3463,3470..3472,3524..3541,3545..3550, 3620..3628) /gene="LOC108058426" /note="putative phosphatidylinositol 3-phosphate binding site [chemical binding]; other site" /db_xref="CDD:277272" polyA_site 4070 /gene="LOC108058426" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tgaaacaaaa agtgtctaaa tgaatacata tgcacacata tgtatgtgca acaacatttg 61 caaatctttg tttataatag ctgacgctta tggattttat ggtgtattct tttagccgat 121 tcacacaatg tccgatggat caccgcctcc atcgatctgc tttatccgcg ccgccgaatc 181 gtatccaaaa tcacaaatgg agaaggaaga ctctcagctg tttgtgccct tccaagagtt 241 ggccggcgaa tcgatcaagt acctgggccg caccgacgac ggcgtcctcg ccctgtcgaa 301 ctaccggata tttctctcca agaagtcaac cgcctacgag acctacgtgc cgctgggcct 361 aatcgagtcc gtgcaggtgc gcgatctgtt ccagctgatc gttaactgca aggacgccag 421 cacggtgcgg tgctcgtttc agtcggcgga acagtgtgcc gactggcagc gccggatcca 481 cctgctcatc ggggttcccg aggcgctgga gacactcttt gcctttccct tctattcctg 541 gacctgcgat gtgattggga ccggaaacgg aagcgcccag gccaacggca acgggctggt 601 ggccaaggat cgctccctaa cgctacaaaa tggctcggcg aagcctacag tggccaatcc 661 cctggcccct gttgatcctg ccagcgattc gaaccgcctg cagcgatccg ttcgctatga 721 gagcgacttc aagagcgagg tggcccgcct cgggttcgat ctgaagggct cgtggcgcat 781 ctccacggcc aatgcagact tcaagctctg cccctcgtat ccacccaaat tgctggtgcc 841 ctgctgcatc accgacgaga tgctccacaa cgtggccaac ttccggggat cgcgaaggct 901 gccagcggtc gtctggcggc atcagaagtc gggtgccatt ctggctcgct gcagccagcc 961 ggaggtcggt tggctcggct ggcggaacac aagggacgag cagctgctga aggcactggc 1021 cgatgcctgt gccttcgaca ggggagagca tgccaggcat tccaccattg ccgctgagac 1081 aaaggcgacg caaccaacaa agggatcctc ttccaaggag accaacggcc aggcggcagg 1141 cttgtccggc aagagttcac cgtctctgga cgattcctcg cacgaggaac ttacgctcga 1201 tgaaataaag aaaattctca ttgtggacgc tcgtagctat acatccgccg ttacaaatcg 1261 cgccagaggt ggcggctgtg agtgcatcga gtactatcct tgtgcggaaa ttgagtttat 1321 gaacctgggc aatatccacg ccatccgaaa gagtttccac gccgtccggc agctgtgcgc 1381 ctcatcgccc gacgatccaa attggttcgg acaactggag aagacgatgt ggatgcagca 1441 tctttcgggt ctgctgggtg ccaccatgac cgttgtgcac actatcgaga agaatggacg 1501 gcccgtacta gtgcactgct cagatggctg ggatcgcact ccccagatcg tggctacggc 1561 gcagctctgc ttggatccgt actacaggac tgtggagggc tttcgcgtgc ttgtggagcg 1621 cgaatggctg aacttcggcc acaaattcgc cgatcgcagc ggcaatggtc ccaactccga 1681 cgaggtcaac gagcgatgcc cggttttcct gcagtggctc gatctggtgc atcaaataca 1741 cagacagtat ccatgcagtt ttgagttcag cataagctat ttgatcaaac tggcgcaaca 1801 ttcgctgtcc tgtctattcg gcacgttcct atgtaactcg ctcagagaac gcatcgagaa 1861 ttcagttttc gaccgaacgt tttcggtgtg gccattttta gcggaaacta tgtatagaaa 1921 tcctctctat aagcatgaga ctgaaaaggt tctttggccg gcgcacagtg tgcggttttt 1981 atacttttgg tcggacgttt accttggtag tttaggcaac aaaaacggca ctgatctgcc 2041 attactgagt aatgaacgac agactggaca caataatggc ctaatggcga agacaagatc 2101 ttcggaagac ttaacaacga acgagttggg acagagcacc atttcgagga gatcgagtga 2161 tccgaacctt acagttgaat ccattgttac agattgcttc aatgcgaaca gcaactccat 2221 gttcgacata cgaaccgaga gcgaaaatgt ccaggaaagc gcgaaagacc ccaaagaatt 2281 tgagctggac gtgacggatg caactgaagt ggttctgggt cccagtagcc gttcaaataa 2341 tcccattccc gagttccatg gcgaccaaag tacagcagct gctaaccgtg atatattgca 2401 agtggaatca caatcgcaaa ggccaagttc cttggtctcc tcaaccgggc gagctgtttt 2461 ggctcactct gaaaacgatc aaaatccagt tcctttaaaa tctgaagaca caagtgatat 2521 ttgtcgcact ctgtggggga atggcgccat cgaaaccagc actgataccc tgattcctgc 2581 ggagcccgta caaaagacga acagcagcga caagaccgac agcagcagca gcagtagaga 2641 tcgagatcga gttcgagatc gaacgccgcc gatcgaactg gcgattggtg ataaaactgc 2701 tcccgctgct ccccaaagca ataaaatcag tcatagctac aataatttgc ccaaggttca 2761 catgaaaccg aatgccgtga tatgcccgca gcgaggggac gcctttccgc atcacctgga 2821 cctacaagtg ccaagggaga gtgcggcaaa cgcaacgagc tgcaagctgg agaagttgtc 2881 gaatgcgaat gcgaatgcca atggatccga atgttaccac caccatgctg atgaaggtct 2941 atttatatct cccgatctcc agcgattcgt gggtcagtcg ccattcgatg cgcccgcggc 3001 gcagggcggt cgaatacgcc gaaatacctt tggctccagc tacagtcgcg acttgaagtt 3061 tacaacagag aacggcagcg cacaccaatt tccttcgtcg gggatcattt cgctgccacc 3121 cacaccgttt caggagaggg cgcagttcac tatatcctgc cccgatggcc tggctcacgg 3181 actcagcgaa caaaacataa gactccacca gatcgtacaa gaacacaagc tacgagagga 3241 aatgcttctg cgggaaattc acggcatgcg attggcactg ttggaaaagg gctgccccag 3301 ctgcaatagc atcgtttcga caaatatgga acatgaaaat ggatcggata tcgttgaaaa 3361 tgcttcaaca tgttcctggg aagccgtcga agagcgtagc ggtcccccat cgtttgccca 3421 cccttcctcg atccaagaga aaaaagcctc cagtgtcctc tgggtaccag atcatgccgt 3481 ttcgcgttgc tctagttgtc aaactgagtt ctggctggga cgaagaaaac atcattgtcg 3541 atcatgtgga gaaatttttt gtgctgactg ctcggaattt tgggcgcctt tgccaaacga 3601 aaagcttttt aatccagtta ggctatgtgg atcttgctac acgaccgtca caacaaatgt 3661 ccaagagtac gctgccgtac ctccagaatc ccaatcccag gtgaaggacg aagagacgtc 3721 gtcttctgca aattcctaag agcttttccc caattatttt aagactcctc tgttgtatca 3781 atatgtacat attattactc aaaatattta ttgcatatgt gttagcacca taatagcgaa 3841 aaattcatct gtgcgtttat atagaacacg aaattataca attttgttag aaatatatat 3901 gtggatatat ggaaacaatt gtaaattcaa atacaatctt taaacgaaac gttttagttt 3961 tggtagttaa attaaaagaa ggagatcgat ggtgacaaaa agttttcagt ggagaaaaac 4021 acaatgatgt aagcagtgta aaaagaatat aaacatatgg atgtgacaat