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LOCUS XM_017143158 4186 bp mRNA linear INV 09-DEC-2024 phosphatidylinositol-3,5-bisphosphate 3-phosphatase MTMR4 (LOC108058426), transcript variant X2, mRNA. ACCESSION XM_017143158 VERSION XM_017143158.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017143158.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4186 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4186 /gene="LOC108058426" /note="phosphatidylinositol-3,5-bisphosphate 3-phosphatase MTMR4; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:108058426" CDS 244..3855 /gene="LOC108058426" /codon_start=1 /product="phosphatidylinositol-3,5-bisphosphate 3-phosphatase MTMR4 isoform X2" /protein_id="XP_016998647.2" /db_xref="GeneID:108058426" /translation="MSDGSPPPSICFIRAAESYPKSQMEKEDSQLFVPFQELAGESIK YLGRTDDGVLALSNYRIFLSKKSTAYETYVPLGLIESVQVRDLFQLIVNCKDASTVRC SFQSAEQCADWQRRIHLLIGVPEALETLFAFPFYSWTCDVIGTGNGSAQANGNGLVAK DRSLTLQNGSAKPTVANPLAPVDPASDSNRLQRSVRYESDFKSEVARLGFDLKGSWRI STANADFKLCPSYPPKLLVPCCITDEMLHNVANFRGSRRLPAVVWRHQKSGAILARCS QPEVGWLGWRNTRDEQLLKALADACAFDRGEHARHSTIAAETKATQPTKGSSSKETNG QAAGLSGKSSPSLDDSSHEELTLDEIKKILIVDARSYTSAVTNRARGGGCECIEYYPC AEIEFMNLGNIHAIRKSFHAVRQLCASSPDDPNWFGQLEKTMWMQHLSGLLGATMTVV HTIEKNGRPVLVHCSDGWDRTPQIVATAQLCLDPYYRTVEGFRVLVEREWLNFGHKFA DRSGNGPNSDEVNERCPVFLQWLDLVHQIHRQYPCSFEFSISYLIKLAQHSLSCLFGT FLCNSLRERIENSVFDRTFSVWPFLAETMYRNPLYKHETEKVLWPAHSVRFLYFWSDV YLGSLGNKNGTDLPLLSNERQTGHNNGLMAKTRSSEDLTTNELGQSTISRRSSDPNLT VESIVTDCFNANSNSMFDIRTESENVQESAKDPKEFELDVTDATEVVLGPSSRSNNPI PEFHGDQSTAAANRDILQVESQSQRPSSLVSSTGRAVLAHSENDQNPVPLKSEDTSDI CRTLWGNGAIETSTDTLIPAEPVQKTNSSDKTDSSSSSRDRDRVRDRTPPIELAIGDK TAPAAPQSNKISHSYNNLPKVHMKPNAVICPQRGDAFPHHLDLQVPRESAANATSCKL EKLSNANANANGSECYHHHADEGLFISPDLQRFVGQSPFDAPAAQGGRIRRNTFGSSY SRDLKFTTENGSAHQFPSSGIISLPPTPFQERAQFTISCPDGLAHGLSEQNIRLHQIV QEHKLREEMLLREIHGMRLALLEKGCPSCNSIVSTNMEHENGSDIVENASTCSWEAVE ERSGPPSFAHPSSIQEKKASSVLWVPDHAVSRCSSCQTEFWLGRRKHHCRSCGEIFCA DCSEFWAPLPNEKLFNPVRLCGSCYTTVTTNVQEYAAVPPESQSQVKDEETSSSANS" misc_feature 319..657 /gene="LOC108058426" /note="Pleckstrin homology-like domain; Region: PH-like; cl17171" /db_xref="CDD:473070" misc_feature 841..1968 /gene="LOC108058426" /note="Myotubularin-like phosphatase domain; Region: Myotub-related; pfam06602" /db_xref="CDD:461958" misc_feature 3577..3756 /gene="LOC108058426" /note="FYVE domain found in myotubularin-related protein 4 (MTMR4) and similar proteins; Region: FYVE_MTMR4; cd15733" /db_xref="CDD:277272" misc_feature order(3577..3579,3586..3588,3640..3657,3661..3666, 3736..3744) /gene="LOC108058426" /note="putative phosphatidylinositol 3-phosphate binding site [chemical binding]; other site" /db_xref="CDD:277272" polyA_site 4186 /gene="LOC108058426" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tgaaacaaaa agtgtctaaa tgaatacata tgcacacata tgtatgtgca acaacatttg 61 caaatctttg tttataatag ctgacgctta tggattttat ggtggtaaat agagcgagaa 121 aagctagaag ccaagcgcgt tttcaattcg gcaattcgtt tttgagctaa atacccgcga 181 gaagctgctg cccgaacgtt ttgtggacct caaaaccgaa aagcccccaa tccgattcac 241 acaatgtccg atggatcacc gcctccatcg atctgcttta tccgcgccgc cgaatcgtat 301 ccaaaatcac aaatggagaa ggaagactct cagctgtttg tgcccttcca agagttggcc 361 ggcgaatcga tcaagtacct gggccgcacc gacgacggcg tcctcgccct gtcgaactac 421 cggatatttc tctccaagaa gtcaaccgcc tacgagacct acgtgccgct gggcctaatc 481 gagtccgtgc aggtgcgcga tctgttccag ctgatcgtta actgcaagga cgccagcacg 541 gtgcggtgct cgtttcagtc ggcggaacag tgtgccgact ggcagcgccg gatccacctg 601 ctcatcgggg ttcccgaggc gctggagaca ctctttgcct ttcccttcta ttcctggacc 661 tgcgatgtga ttgggaccgg aaacggaagc gcccaggcca acggcaacgg gctggtggcc 721 aaggatcgct ccctaacgct acaaaatggc tcggcgaagc ctacagtggc caatcccctg 781 gcccctgttg atcctgccag cgattcgaac cgcctgcagc gatccgttcg ctatgagagc 841 gacttcaaga gcgaggtggc ccgcctcggg ttcgatctga agggctcgtg gcgcatctcc 901 acggccaatg cagacttcaa gctctgcccc tcgtatccac ccaaattgct ggtgccctgc 961 tgcatcaccg acgagatgct ccacaacgtg gccaacttcc ggggatcgcg aaggctgcca 1021 gcggtcgtct ggcggcatca gaagtcgggt gccattctgg ctcgctgcag ccagccggag 1081 gtcggttggc tcggctggcg gaacacaagg gacgagcagc tgctgaaggc actggccgat 1141 gcctgtgcct tcgacagggg agagcatgcc aggcattcca ccattgccgc tgagacaaag 1201 gcgacgcaac caacaaaggg atcctcttcc aaggagacca acggccaggc ggcaggcttg 1261 tccggcaaga gttcaccgtc tctggacgat tcctcgcacg aggaacttac gctcgatgaa 1321 ataaagaaaa ttctcattgt ggacgctcgt agctatacat ccgccgttac aaatcgcgcc 1381 agaggtggcg gctgtgagtg catcgagtac tatccttgtg cggaaattga gtttatgaac 1441 ctgggcaata tccacgccat ccgaaagagt ttccacgccg tccggcagct gtgcgcctca 1501 tcgcccgacg atccaaattg gttcggacaa ctggagaaga cgatgtggat gcagcatctt 1561 tcgggtctgc tgggtgccac catgaccgtt gtgcacacta tcgagaagaa tggacggccc 1621 gtactagtgc actgctcaga tggctgggat cgcactcccc agatcgtggc tacggcgcag 1681 ctctgcttgg atccgtacta caggactgtg gagggctttc gcgtgcttgt ggagcgcgaa 1741 tggctgaact tcggccacaa attcgccgat cgcagcggca atggtcccaa ctccgacgag 1801 gtcaacgagc gatgcccggt tttcctgcag tggctcgatc tggtgcatca aatacacaga 1861 cagtatccat gcagttttga gttcagcata agctatttga tcaaactggc gcaacattcg 1921 ctgtcctgtc tattcggcac gttcctatgt aactcgctca gagaacgcat cgagaattca 1981 gttttcgacc gaacgttttc ggtgtggcca tttttagcgg aaactatgta tagaaatcct 2041 ctctataagc atgagactga aaaggttctt tggccggcgc acagtgtgcg gtttttatac 2101 ttttggtcgg acgtttacct tggtagttta ggcaacaaaa acggcactga tctgccatta 2161 ctgagtaatg aacgacagac tggacacaat aatggcctaa tggcgaagac aagatcttcg 2221 gaagacttaa caacgaacga gttgggacag agcaccattt cgaggagatc gagtgatccg 2281 aaccttacag ttgaatccat tgttacagat tgcttcaatg cgaacagcaa ctccatgttc 2341 gacatacgaa ccgagagcga aaatgtccag gaaagcgcga aagaccccaa agaatttgag 2401 ctggacgtga cggatgcaac tgaagtggtt ctgggtccca gtagccgttc aaataatccc 2461 attcccgagt tccatggcga ccaaagtaca gcagctgcta accgtgatat attgcaagtg 2521 gaatcacaat cgcaaaggcc aagttccttg gtctcctcaa ccgggcgagc tgttttggct 2581 cactctgaaa acgatcaaaa tccagttcct ttaaaatctg aagacacaag tgatatttgt 2641 cgcactctgt gggggaatgg cgccatcgaa accagcactg ataccctgat tcctgcggag 2701 cccgtacaaa agacgaacag cagcgacaag accgacagca gcagcagcag tagagatcga 2761 gatcgagttc gagatcgaac gccgccgatc gaactggcga ttggtgataa aactgctccc 2821 gctgctcccc aaagcaataa aatcagtcat agctacaata atttgcccaa ggttcacatg 2881 aaaccgaatg ccgtgatatg cccgcagcga ggggacgcct ttccgcatca cctggaccta 2941 caagtgccaa gggagagtgc ggcaaacgca acgagctgca agctggagaa gttgtcgaat 3001 gcgaatgcga atgccaatgg atccgaatgt taccaccacc atgctgatga aggtctattt 3061 atatctcccg atctccagcg attcgtgggt cagtcgccat tcgatgcgcc cgcggcgcag 3121 ggcggtcgaa tacgccgaaa tacctttggc tccagctaca gtcgcgactt gaagtttaca 3181 acagagaacg gcagcgcaca ccaatttcct tcgtcgggga tcatttcgct gccacccaca 3241 ccgtttcagg agagggcgca gttcactata tcctgccccg atggcctggc tcacggactc 3301 agcgaacaaa acataagact ccaccagatc gtacaagaac acaagctacg agaggaaatg 3361 cttctgcggg aaattcacgg catgcgattg gcactgttgg aaaagggctg ccccagctgc 3421 aatagcatcg tttcgacaaa tatggaacat gaaaatggat cggatatcgt tgaaaatgct 3481 tcaacatgtt cctgggaagc cgtcgaagag cgtagcggtc ccccatcgtt tgcccaccct 3541 tcctcgatcc aagagaaaaa agcctccagt gtcctctggg taccagatca tgccgtttcg 3601 cgttgctcta gttgtcaaac tgagttctgg ctgggacgaa gaaaacatca ttgtcgatca 3661 tgtggagaaa ttttttgtgc tgactgctcg gaattttggg cgcctttgcc aaacgaaaag 3721 ctttttaatc cagttaggct atgtggatct tgctacacga ccgtcacaac aaatgtccaa 3781 gagtacgctg ccgtacctcc agaatcccaa tcccaggtga aggacgaaga gacgtcgtct 3841 tctgcaaatt cctaagagct tttccccaat tattttaaga ctcctctgtt gtatcaatat 3901 gtacatatta ttactcaaaa tatttattgc atatgtgtta gcaccataat agcgaaaaat 3961 tcatctgtgc gtttatatag aacacgaaat tatacaattt tgttagaaat atatatgtgg 4021 atatatggaa acaattgtaa attcaaatac aatctttaaa cgaaacgttt tagttttggt 4081 agttaaatta aaagaaggag atcgatggtg acaaaaagtt ttcagtggag aaaaacacaa 4141 tgatgtaagc agtgtaaaaa gaatataaac atatggatgt gacaat