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LOCUS XM_017143157 4066 bp mRNA linear INV 09-DEC-2024 phosphatidylinositol-3,5-bisphosphate 3-phosphatase MTMR4 (LOC108058426), transcript variant X1, mRNA. ACCESSION XM_017143157 VERSION XM_017143157.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017143157.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4066 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4066 /gene="LOC108058426" /note="phosphatidylinositol-3,5-bisphosphate 3-phosphatase MTMR4; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins" /db_xref="GeneID:108058426" CDS 97..3735 /gene="LOC108058426" /codon_start=1 /product="phosphatidylinositol-3,5-bisphosphate 3-phosphatase MTMR4 isoform X1" /protein_id="XP_016998646.2" /db_xref="GeneID:108058426" /translation="MDFMVPIHTMSDGSPPPSICFIRAAESYPKSQMEKEDSQLFVPF QELAGESIKYLGRTDDGVLALSNYRIFLSKKSTAYETYVPLGLIESVQVRDLFQLIVN CKDASTVRCSFQSAEQCADWQRRIHLLIGVPEALETLFAFPFYSWTCDVIGTGNGSAQ ANGNGLVAKDRSLTLQNGSAKPTVANPLAPVDPASDSNRLQRSVRYESDFKSEVARLG FDLKGSWRISTANADFKLCPSYPPKLLVPCCITDEMLHNVANFRGSRRLPAVVWRHQK SGAILARCSQPEVGWLGWRNTRDEQLLKALADACAFDRGEHARHSTIAAETKATQPTK GSSSKETNGQAAGLSGKSSPSLDDSSHEELTLDEIKKILIVDARSYTSAVTNRARGGG CECIEYYPCAEIEFMNLGNIHAIRKSFHAVRQLCASSPDDPNWFGQLEKTMWMQHLSG LLGATMTVVHTIEKNGRPVLVHCSDGWDRTPQIVATAQLCLDPYYRTVEGFRVLVERE WLNFGHKFADRSGNGPNSDEVNERCPVFLQWLDLVHQIHRQYPCSFEFSISYLIKLAQ HSLSCLFGTFLCNSLRERIENSVFDRTFSVWPFLAETMYRNPLYKHETEKVLWPAHSV RFLYFWSDVYLGSLGNKNGTDLPLLSNERQTGHNNGLMAKTRSSEDLTTNELGQSTIS RRSSDPNLTVESIVTDCFNANSNSMFDIRTESENVQESAKDPKEFELDVTDATEVVLG PSSRSNNPIPEFHGDQSTAAANRDILQVESQSQRPSSLVSSTGRAVLAHSENDQNPVP LKSEDTSDICRTLWGNGAIETSTDTLIPAEPVQKTNSSDKTDSSSSSRDRDRVRDRTP PIELAIGDKTAPAAPQSNKISHSYNNLPKVHMKPNAVICPQRGDAFPHHLDLQVPRES AANATSCKLEKLSNANANANGSECYHHHADEGLFISPDLQRFVGQSPFDAPAAQGGRI RRNTFGSSYSRDLKFTTENGSAHQFPSSGIISLPPTPFQERAQFTISCPDGLAHGLSE QNIRLHQIVQEHKLREEMLLREIHGMRLALLEKGCPSCNSIVSTNMEHENGSDIVENA STCSWEAVEERSGPPSFAHPSSIQEKKASSVLWVPDHAVSRCSSCQTEFWLGRRKHHC RSCGEIFCADCSEFWAPLPNEKLFNPVRLCGSCYTTVTTNVQEYAAVPPESQSQVKDE ETSSSANS" misc_feature 199..537 /gene="LOC108058426" /note="Pleckstrin homology-like domain; Region: PH-like; cl17171" /db_xref="CDD:473070" misc_feature 721..1848 /gene="LOC108058426" /note="Myotubularin-like phosphatase domain; Region: Myotub-related; pfam06602" /db_xref="CDD:461958" misc_feature 3457..3636 /gene="LOC108058426" /note="FYVE domain found in myotubularin-related protein 4 (MTMR4) and similar proteins; Region: FYVE_MTMR4; cd15733" /db_xref="CDD:277272" misc_feature order(3457..3459,3466..3468,3520..3537,3541..3546, 3616..3624) /gene="LOC108058426" /note="putative phosphatidylinositol 3-phosphate binding site [chemical binding]; other site" /db_xref="CDD:277272" polyA_site 4066 /gene="LOC108058426" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 atggaaatga aacaaaaagt gtctaaatga atacatatgc acacatatgt atgtgcaaca 61 acatttgcaa atctttgttt ataatagctg acgcttatgg attttatggt gccgattcac 121 acaatgtccg atggatcacc gcctccatcg atctgcttta tccgcgccgc cgaatcgtat 181 ccaaaatcac aaatggagaa ggaagactct cagctgtttg tgcccttcca agagttggcc 241 ggcgaatcga tcaagtacct gggccgcacc gacgacggcg tcctcgccct gtcgaactac 301 cggatatttc tctccaagaa gtcaaccgcc tacgagacct acgtgccgct gggcctaatc 361 gagtccgtgc aggtgcgcga tctgttccag ctgatcgtta actgcaagga cgccagcacg 421 gtgcggtgct cgtttcagtc ggcggaacag tgtgccgact ggcagcgccg gatccacctg 481 ctcatcgggg ttcccgaggc gctggagaca ctctttgcct ttcccttcta ttcctggacc 541 tgcgatgtga ttgggaccgg aaacggaagc gcccaggcca acggcaacgg gctggtggcc 601 aaggatcgct ccctaacgct acaaaatggc tcggcgaagc ctacagtggc caatcccctg 661 gcccctgttg atcctgccag cgattcgaac cgcctgcagc gatccgttcg ctatgagagc 721 gacttcaaga gcgaggtggc ccgcctcggg ttcgatctga agggctcgtg gcgcatctcc 781 acggccaatg cagacttcaa gctctgcccc tcgtatccac ccaaattgct ggtgccctgc 841 tgcatcaccg acgagatgct ccacaacgtg gccaacttcc ggggatcgcg aaggctgcca 901 gcggtcgtct ggcggcatca gaagtcgggt gccattctgg ctcgctgcag ccagccggag 961 gtcggttggc tcggctggcg gaacacaagg gacgagcagc tgctgaaggc actggccgat 1021 gcctgtgcct tcgacagggg agagcatgcc aggcattcca ccattgccgc tgagacaaag 1081 gcgacgcaac caacaaaggg atcctcttcc aaggagacca acggccaggc ggcaggcttg 1141 tccggcaaga gttcaccgtc tctggacgat tcctcgcacg aggaacttac gctcgatgaa 1201 ataaagaaaa ttctcattgt ggacgctcgt agctatacat ccgccgttac aaatcgcgcc 1261 agaggtggcg gctgtgagtg catcgagtac tatccttgtg cggaaattga gtttatgaac 1321 ctgggcaata tccacgccat ccgaaagagt ttccacgccg tccggcagct gtgcgcctca 1381 tcgcccgacg atccaaattg gttcggacaa ctggagaaga cgatgtggat gcagcatctt 1441 tcgggtctgc tgggtgccac catgaccgtt gtgcacacta tcgagaagaa tggacggccc 1501 gtactagtgc actgctcaga tggctgggat cgcactcccc agatcgtggc tacggcgcag 1561 ctctgcttgg atccgtacta caggactgtg gagggctttc gcgtgcttgt ggagcgcgaa 1621 tggctgaact tcggccacaa attcgccgat cgcagcggca atggtcccaa ctccgacgag 1681 gtcaacgagc gatgcccggt tttcctgcag tggctcgatc tggtgcatca aatacacaga 1741 cagtatccat gcagttttga gttcagcata agctatttga tcaaactggc gcaacattcg 1801 ctgtcctgtc tattcggcac gttcctatgt aactcgctca gagaacgcat cgagaattca 1861 gttttcgacc gaacgttttc ggtgtggcca tttttagcgg aaactatgta tagaaatcct 1921 ctctataagc atgagactga aaaggttctt tggccggcgc acagtgtgcg gtttttatac 1981 ttttggtcgg acgtttacct tggtagttta ggcaacaaaa acggcactga tctgccatta 2041 ctgagtaatg aacgacagac tggacacaat aatggcctaa tggcgaagac aagatcttcg 2101 gaagacttaa caacgaacga gttgggacag agcaccattt cgaggagatc gagtgatccg 2161 aaccttacag ttgaatccat tgttacagat tgcttcaatg cgaacagcaa ctccatgttc 2221 gacatacgaa ccgagagcga aaatgtccag gaaagcgcga aagaccccaa agaatttgag 2281 ctggacgtga cggatgcaac tgaagtggtt ctgggtccca gtagccgttc aaataatccc 2341 attcccgagt tccatggcga ccaaagtaca gcagctgcta accgtgatat attgcaagtg 2401 gaatcacaat cgcaaaggcc aagttccttg gtctcctcaa ccgggcgagc tgttttggct 2461 cactctgaaa acgatcaaaa tccagttcct ttaaaatctg aagacacaag tgatatttgt 2521 cgcactctgt gggggaatgg cgccatcgaa accagcactg ataccctgat tcctgcggag 2581 cccgtacaaa agacgaacag cagcgacaag accgacagca gcagcagcag tagagatcga 2641 gatcgagttc gagatcgaac gccgccgatc gaactggcga ttggtgataa aactgctccc 2701 gctgctcccc aaagcaataa aatcagtcat agctacaata atttgcccaa ggttcacatg 2761 aaaccgaatg ccgtgatatg cccgcagcga ggggacgcct ttccgcatca cctggaccta 2821 caagtgccaa gggagagtgc ggcaaacgca acgagctgca agctggagaa gttgtcgaat 2881 gcgaatgcga atgccaatgg atccgaatgt taccaccacc atgctgatga aggtctattt 2941 atatctcccg atctccagcg attcgtgggt cagtcgccat tcgatgcgcc cgcggcgcag 3001 ggcggtcgaa tacgccgaaa tacctttggc tccagctaca gtcgcgactt gaagtttaca 3061 acagagaacg gcagcgcaca ccaatttcct tcgtcgggga tcatttcgct gccacccaca 3121 ccgtttcagg agagggcgca gttcactata tcctgccccg atggcctggc tcacggactc 3181 agcgaacaaa acataagact ccaccagatc gtacaagaac acaagctacg agaggaaatg 3241 cttctgcggg aaattcacgg catgcgattg gcactgttgg aaaagggctg ccccagctgc 3301 aatagcatcg tttcgacaaa tatggaacat gaaaatggat cggatatcgt tgaaaatgct 3361 tcaacatgtt cctgggaagc cgtcgaagag cgtagcggtc ccccatcgtt tgcccaccct 3421 tcctcgatcc aagagaaaaa agcctccagt gtcctctggg taccagatca tgccgtttcg 3481 cgttgctcta gttgtcaaac tgagttctgg ctgggacgaa gaaaacatca ttgtcgatca 3541 tgtggagaaa ttttttgtgc tgactgctcg gaattttggg cgcctttgcc aaacgaaaag 3601 ctttttaatc cagttaggct atgtggatct tgctacacga ccgtcacaac aaatgtccaa 3661 gagtacgctg ccgtacctcc agaatcccaa tcccaggtga aggacgaaga gacgtcgtct 3721 tctgcaaatt cctaagagct tttccccaat tattttaaga ctcctctgtt gtatcaatat 3781 gtacatatta ttactcaaaa tatttattgc atatgtgtta gcaccataat agcgaaaaat 3841 tcatctgtgc gtttatatag aacacgaaat tatacaattt tgttagaaat atatatgtgg 3901 atatatggaa acaattgtaa attcaaatac aatctttaaa cgaaacgttt tagttttggt 3961 agttaaatta aaagaaggag atcgatggtg acaaaaagtt ttcagtggag aaaaacacaa 4021 tgatgtaagc agtgtaaaaa gaatataaac atatggatgt gacaat