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LOCUS XM_017143115 1673 bp mRNA linear INV 09-DEC-2024 (caz), transcript variant X1, mRNA. ACCESSION XM_017143115 VERSION XM_017143115.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017143115.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1673 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..1673 /gene="caz" /note="FUS RNA binding protein cabeza; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108058413" CDS 170..1384 /gene="caz" /codon_start=1 /product="RNA-binding protein cabeza isoform X1" /protein_id="XP_016998604.2" /db_xref="GeneID:108058413" /translation="MERGGYGGGAGQQGYNNFAVPPPNYQQMPNKTGNYNEPPPNYGK QGGGGYDSGHRGSGGSGGGGGGGGGGGSWNDRGGNSYGNGGASKDSYNKGPGGYSGGG GGGGGGGSSGGDMITQEDTIFVSGMDPSTTEQDIETHFGAIGIIKKDKRTMKPKIWLY KNKETGASKGEATVTYDDTNAAQSAIEWFDGRDFNGNAIKVSLAQRQNNWNKGGGGGG RGGFGGRRGGGGGGGGGGGGGGGRFDRGGGGNGGGGGGGRFDRGGGGGGGAGGGGGNV QPRDGDWKCNSCNNTNFAWRNECNRCKTPKGDDEGSSGGGGGGGGYGGGGGGGYDRGD RGSGGGGYQNRDRGGNSQGGGGGGGYSRFNDNGGGGGGGGRGGGRGGGGGNRRDGGGP MRNDGGMRSRPY" misc_feature 533..781 /gene="caz" /note="RNA recognition motif (RRM) found in Drosophila melanogaster RNA-binding protein cabeza and similar proteins; Region: RRM_SARFH; cd12534" /db_xref="CDD:240978" misc_feature 1004..1093 /gene="caz" /note="Zn-finger in Ran binding protein and others; Region: zf-RanBP; pfam00641" /db_xref="CDD:395516" misc_feature 1016..1075 /gene="caz" /note="RanBP2-type Zn finger [structural motif]; Region: RanBP2-type Zn finger" /db_xref="CDD:275375" polyA_site 1673 /gene="caz" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gtcgacgcac atccctaatt tattttcaca cgccatttta caataaaatt tgtaacgatc 61 tgacgctatc ctactttcat tcgggacatt ttgtgcgcag cgagtaattg aaactcctgc 121 aattccatcg atcgaaaaga gagactgttc gcagcagcgt ttatttgtca tggagcgtgg 181 cggttatggt ggtggtgccg gacagcaggg atataataat ttcgctgtcc ccccaccaaa 241 ctaccaacaa atgccaaata aaacgggtaa ctacaacgag ccacctccga actacggcaa 301 acaaggcggc ggtggttatg attccggtca tcgtggttct ggtggcagcg gcggcggcgg 361 tggaggtggc ggcggcggag gctcttggaa cgaccgagga ggcaattcct acggaaatgg 421 aggcgccagc aaggacagct acaacaaagg acccggcggc tactcgggcg gcggtggagg 481 aggcggcggc ggcggttcca gtggcggcga catgatcacc caggaggaca caatttttgt 541 ctccggcatg gatccatcca ccaccgagca ggatattgag actcacttcg gagctattgg 601 catcattaag aaggacaagc gtacgatgaa gcccaagatt tggctgtaca agaacaagga 661 aacgggcgcc tcgaagggcg aggccacagt cacctacgac gacaccaatg cggcccagtc 721 ggccatcgaa tggttcgacg ggcgggactt caacgggaat gcgatcaagg tgtcgctggc 781 ccagcgccag aataactgga acaagggcgg cggcggcggt ggtcgcggcg gattcggggg 841 tcgacgaggt ggtggaggtg gcggcggagg tggaggcggc ggcggcggtg gacgcttcga 901 tcgaggagga ggcggcaacg gaggaggcgg cggcggcgga cgcttcgatc gcggcggtgg 961 aggcggcgga ggagccggcg gcggcggtgg caatgtgcag ccacgcgatg gcgactggaa 1021 gtgcaatagc tgcaacaaca ccaactttgc ctggcgcaat gagtgcaatc gctgcaagac 1081 gcccaaaggc gacgatgaag gctccagcgg tggcggcggt ggaggcggtg gctacggagg 1141 cggcggcgga ggcggctacg accgtggcga tcgcggatcc ggcggtggtg gctatcagaa 1201 ccgtgatcgc ggtggcaact cgcaaggagg cggcggcggt ggcggctact cgagatttaa 1261 tgacaacggc ggaggcggcg gcggcggagg acgtggtggt ggccgcggag gcggcggtgg 1321 caaccgtcgc gatggcggcg gacccatgag gaacgacgga ggcatgcgct ccagaccata 1381 ctaggcgcat aggcggcggt ggcacctatt ttttcacatt tacgtattaa ttgtagcgag 1441 tactctttta aatgtacttt taaatttacc agtcagagct aattataaat accagcagca 1501 aaaagcacac acatcttcat tttaaccgac ttcacggaca cggttaccgc tcgttttgac 1561 tgacttatat tatattatgt aatctaattt aacaattgta attgtaacat ggtacatacg 1621 aataaaatat atatatatat atagctcata tatatatatg tatataaatt aaa